AT1G19950

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004929
Physical Location & Seq
Forward (+)
6924091 .. 6926741
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19950.1

Sequence Viewer

Length: 948 bp
ATGATTGGATCGTTTCTAACAAGAGGACTAGTAATGGTATTTGGATATGCGTATCCTGCTTATGAATGTTACAAAGCGGTTGAAAAGAATAAGCCTGAGATGCAACAGCTTCGATTCTGGTGCCAATACTGGATTTTGGTGGCTGCTTTGACAATTTTCGAAAGAGTTGGCGATGCTCTTGCTTCATGGGTTCCACTATACTGTGAGGCAAAACTGGCATTTTTCATATATCTTTGGTTCCCCAAGACCAGAGGAACTACATACGTGTACGATTCATTCTTTCAGCCATATGTTGCAAAGCATGAAAATGAAATCGACCGCAGCTTGATTGAGCTAAGGACCAAAGCTGGGGATCTGGCAGTGATATACTGCAGAAAAGCAGTGAGCTATGGACAAACAAGAATCGTAGAGATCCTGCATTTTGTAGCTCTCCAGTCAACACCAAAACCTAAGCCTAAGGAAAAGAAGCAGGCAGCAGCACCAGAAGAGGAAGAACAGAAACAACCGGATCTTAAGGCGACGAGCCAAGCAGCTTCTTCTAATCCTCAAGTGCGTCTGCAATCGAAGAAACCACAGCTTGTAACCAAAGAACCTATATCACCAAAGCCTCTTTCATCCCCACGTAAGCAACAACAACTACAAACAGAGACCAAGGAAGCAAAAGCAAGCGTGTCACAAACCAAACTCACTACTCTAACTCCACCAGGACCACCACCACCACCACCACCACCGCCACCATCGCCCACAACCGCCGCGAAACGAAACGCTGATCCAGCACAGCCATCACCAACAGAGGCAGAAGAAGCGTCACAGACTGTCGCAGCTTTACCAGAACCAGCGTCTGAGATTCAGCGAGCGTCATCGTCGAAAGAGACTATAATGGAGGAAACACTAAGGATCACTCGTGGGAGTCTGAGAAAAGCTCGTTCTGCGGGAGCACCGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

9.43

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 19 - 97 9e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AccII CGCG 2 cut(s) 755, 943
AciI CCGC 7 cut(s) 77, 319, 731, 750, 753, 932, 941
AclWI GGATC 6 cut(s) 16, 360, 406, 516, 764, 905
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 348
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 28
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
Alw21I GWGCWC 1 cut(s) 940
Alw26I GTCTC 2 cut(s) 641, 866
AlwI GGATC 6 cut(s) 16, 360, 406, 516, 764, 905
AlwNI CAGNNNCTG 1 cut(s) 842
ApeKI GCWGC 6 cut(s) 143, 321, 473, 476, 530, 821
AspLEI GCGC 1 cut(s) 945
AspS9I GGNCC 2 cut(s) 339, 707
AsuHPI GGTGA 2 cut(s) 591, 777
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 2 cut(s) 339, 707
AxyI CCTNAGG 1 cut(s) 456
BanI GGYRCC 1 cut(s) 120
BauI CACGAG 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 940
BbvI GCAGC 6 cut(s) 130, 333, 485, 488, 542, 833
BccI CCATC 2 cut(s) 745, 790
BcgI CGANNNNNNTGC 6 cut(s) 92, 102, 126, 136, 161, 195
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 641, 866
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 370
BfrI CTTAAG 1 cut(s) 512
BfuI GTATCC 1 cut(s) 63
BisI GCNGC 7 cut(s) 144, 322, 474, 477, 531, 753, 822
BlsI GCNGC 7 cut(s) 145, 323, 475, 478, 532, 754, 823
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 2 cut(s) 339, 707
BmgT120I GGNCC 2 cut(s) 339, 707
BmiI GGNNCC 3 cut(s) 122, 192, 239
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 2 cut(s) 90, 163
BplI GAGNNNNNCTC 2 cut(s) 907, 939
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 2 cut(s) 335, 450
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 531
BsaAI YACGTR 2 cut(s) 265, 623
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 651
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 3 cut(s) 134, 219, 433
Bse21I CCTNAGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 1 cut(s) 614
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 87, 834, 905
BseNI ACTGG 3 cut(s) 134, 219, 433
BseXI GCAGC 6 cut(s) 130, 333, 485, 488, 542, 833
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 755, 943
Bsh1285I CGRYCG 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 940
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 641, 866
Bso31I GGTCTC 1 cut(s) 641
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 940
Bsp143I GATC 6 cut(s) 8, 352, 411, 508, 769, 897
BspACI CCGC 7 cut(s) 77, 319, 731, 750, 753, 932, 941
BspCNI CTCAG 3 cut(s) 88, 835, 906
BspFNI CGCG 2 cut(s) 755, 943
BspLI GGNNCC 3 cut(s) 122, 192, 239
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 6 cut(s) 16, 360, 406, 516, 764, 905
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 641
BsrI ACTGG 3 cut(s) 134, 219, 433
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 6 cut(s) 8, 352, 411, 508, 769, 897
BssSI CACGAG 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 203, 817
Bst6I CTCTTC 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 512
BstBAI YACGTR 2 cut(s) 265, 623
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 471, 667, 855
BstDEI CTNAG 7 cut(s) 96, 335, 450, 456, 843, 893, 914
BstF5I GGATG 1 cut(s) 614
BstFNI CGCG 2 cut(s) 755, 943
BstHHI GCGC 1 cut(s) 945
BstKTI GATC 6 cut(s) 11, 355, 414, 511, 772, 900
BstMAI GTCTC 2 cut(s) 641, 866
BstMBI GATC 6 cut(s) 8, 352, 411, 508, 769, 897
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 7 cut(s) 56, 100, 215, 739, 773, 803, 929
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 2 cut(s) 755, 943
BstV1I GCAGC 6 cut(s) 130, 333, 485, 488, 542, 833
BstX2I RGATCY 3 cut(s) 352, 411, 508
BstYI RGATCY 3 cut(s) 352, 411, 508
Bsu36I CCTNAGG 1 cut(s) 456
BsuI GTATCC 1 cut(s) 63
BtgZI GCGATG 2 cut(s) 186, 723
BtsCI GGATG 1 cut(s) 614
BtsI GCAGTG 2 cut(s) 366, 387
BtsIMutI CAGTG 2 cut(s) 366, 387
Cac8I GCNNGC 3 cut(s) 471, 667, 855
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 1 cut(s) 945
Cfr13I GGNCC 2 cut(s) 339, 707
CseI GACGC 4 cut(s) 542, 795, 828, 846
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 186, 302
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 7 cut(s) 96, 335, 450, 456, 843, 893, 914
DpnI GATC 6 cut(s) 10, 354, 413, 510, 771, 899
DpnII GATC 6 cut(s) 8, 352, 411, 508, 769, 897
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 651
Eco31I GGTCTC 1 cut(s) 641
Eco47I GGWCC 2 cut(s) 339, 707
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 2 cut(s) 189, 305
FatI CATG 2 cut(s) 185, 301
FauI CCCGC 1 cut(s) 925
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 7 cut(s) 144, 322, 474, 477, 531, 753, 822
FokI GGATG 1 cut(s) 601
Fsp4HI GCNGC 7 cut(s) 144, 322, 474, 477, 531, 753, 822
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 944
GluI GCNGC 7 cut(s) 144, 322, 474, 477, 531, 753, 822
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 416
HapII CCGG 1 cut(s) 506
HgaI GACGC 4 cut(s) 542, 795, 828, 846
HhaI GCGC 1 cut(s) 945
Hin1II CATG 2 cut(s) 189, 305
Hin6I GCGC 1 cut(s) 943
HinP1I GCGC 1 cut(s) 943
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 5 cut(s) 114, 272, 402, 847, 910
HpaII CCGG 1 cut(s) 506
HphI GGTGA 2 cut(s) 591, 777
Hpy166II GTNNAC 2 cut(s) 268, 438
Hpy188I TCNGA 2 cut(s) 844, 915
Hpy8I GTNNAC 2 cut(s) 268, 438
Hpy99I CGWCG 2 cut(s) 523, 868
HpyCH4III ACNGT 2 cut(s) 203, 817
HpyCH4IV ACGT 2 cut(s) 264, 622
HpyCH4V TGCA 5 cut(s) 103, 296, 372, 418, 559
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 100, 215, 739, 773, 803, 929
HpyF3I CTNAG 7 cut(s) 96, 335, 450, 456, 843, 893, 914
HpySE526I ACGT 2 cut(s) 264, 622
Hsp92II CATG 2 cut(s) 189, 305
HspAI GCGC 1 cut(s) 943
Kzo9I GATC 6 cut(s) 8, 352, 411, 508, 769, 897
LmnI GCTCC 1 cut(s) 935
Lsp1109I GCAGC 6 cut(s) 130, 333, 485, 488, 542, 833
LweI GCATC 2 cut(s) 90, 163
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 264, 622
MaeIII GTNAC 4 cut(s) 68, 580, 672, 807
MalI GATC 6 cut(s) 10, 354, 413, 510, 771, 899
MboI GATC 6 cut(s) 8, 352, 411, 508, 769, 897
MboII GAAGA 5 cut(s) 497, 503, 528, 577, 812
MflI RGATCY 3 cut(s) 352, 411, 508
MhlI GDGCHC 1 cut(s) 940
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 919
MnlI CCTC 8 cut(s) 17, 199, 245, 481, 555, 618, 787, 877
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 2 cut(s) 755, 943
MwoI GCNNNNNNNGC 7 cut(s) 56, 100, 215, 739, 773, 803, 929
NdeI CATATG 1 cut(s) 289
NdeII GATC 6 cut(s) 8, 352, 411, 508, 769, 897
NlaIII CATG 2 cut(s) 189, 305
NlaIV GGNNCC 3 cut(s) 122, 192, 239
NmuCI GTSAC 2 cut(s) 672, 807
NspV TTCGAA 1 cut(s) 159
PfeI GAWTC 4 cut(s) 114, 272, 402, 847
PkrI GCNGC 7 cut(s) 145, 323, 475, 478, 532, 754, 823
PleI GAGTC 1 cut(s) 918
PpsI GAGTC 1 cut(s) 918
Ppu21I YACGTR 2 cut(s) 265, 623
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 122, 192, 239
PspPI GGNCC 2 cut(s) 339, 707
PstI CTGCAG 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 3 cut(s) 352, 411, 508
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 7 cut(s) 144, 322, 474, 477, 531, 753, 822
Sau3AI GATC 6 cut(s) 8, 352, 411, 508, 769, 897
Sau96I GGNCC 2 cut(s) 339, 707
SchI GAGTC 1 cut(s) 919
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 940
SfaNI GCATC 2 cut(s) 90, 163
SfcI CTRYAG 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 2 cut(s) 339, 707
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 512, 546
SmoI CTYRAG 2 cut(s) 512, 546
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 153
SsiI CCGC 7 cut(s) 77, 319, 731, 750, 753, 932, 941
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 2 cut(s) 203, 817
TaiI ACGT 2 cut(s) 267, 625
TaqI TCGA 5 cut(s) 112, 159, 315, 563, 866
TasI AATT 1 cut(s) 153
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 4 cut(s) 114, 272, 402, 847
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 2 cut(s) 366, 387
TseFI GTSAC 2 cut(s) 672, 807
TseI GCWGC 6 cut(s) 143, 321, 473, 476, 530, 821
Tsp45I GTSAC 2 cut(s) 672, 807
TspDTI ATGAA 7 cut(s) 78, 174, 214, 264, 318, 324, 603
TspRI CASTG 2 cut(s) 366, 387
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 339, 707
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.