Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

62136861 .. 62139785

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATTGGATCATTTCTTACCAGAGGACTTGTGATGATCCTTGGCTATGCTTATCCAGCCTATGAGTGCTACAAAACTGTTGAAAAGAACAAGCCGGAGATCGAACAACTTCGCTTTTGGTGTCAGTATTGGATTTTGGTGGCTGTTTTGACGGTATGTGAGAGAGTTGGTGATGCTTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACTTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATATCGTTATTTTATATTGGCAAAGAGCTGCAAGCTATAGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAAACCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCAGCTACAACAACGCAATCCCAACCTGAAGAACCGCCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGCCTAAAGCTGCCCCCCAAGCAGCAGGTTCCAATACTCAAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCTGCAGCAACTGAAAATACAAATCCACCCCCGAAAGATACACTAATGGAAGGTACCAGTCGGCAAACACGAGCATCGTTAAGGAAAACCCGTTCTGCATCTGCAGCAAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

293

Amino Acids

32.6

Weight (kDa)

9.26

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	19 - 97	4.3e-26	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	818
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	2 cut(s)	16, 31
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	3 cut(s)	579, 747, 771
AfaI	GTAC	3 cut(s)	269, 586, 820
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	469
AloI	GAACNNNNNNTCC	2 cut(s)	841, 873
AluBI	AGCT	7 cut(s)	209, 380, 387, 518, 536, 650, 692
AluI	AGCT	7 cut(s)	209, 380, 387, 518, 536, 650, 692
AlwI	GGATC	2 cut(s)	16, 31
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	446, 709
ApeKI	GCWGC	7 cut(s)	380, 428, 497, 650, 662, 770, 869
Asp700I	GAANNNNTTC	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	818
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	182, 362
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	818
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	834
BbvI	GCAGC	6 cut(s)	367, 415, 484, 637, 674, 782
BccI	CCATC	1 cut(s)	577
BciT130I	CCWGG	1 cut(s)	471
BfaI	CTAG	2 cut(s)	342, 594
BfmI	CTRYAG	3 cut(s)	388, 768, 867
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	7 cut(s)	381, 429, 498, 651, 663, 771, 870
BlsI	GCNGC	7 cut(s)	382, 430, 499, 652, 664, 772, 871
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	4 cut(s)	192, 630, 670, 820
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	3 cut(s)	163, 848, 872
BpmI	CTGGAG	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	40, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	582, 822
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	40, 443
BseGI	GGATG	1 cut(s)	761
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	747
BseNI	ACTGG	2 cut(s)	582, 822
BseXI	GCAGC	6 cut(s)	367, 415, 484, 637, 674, 782
BshFI	GGCC	2 cut(s)	448, 711
BshNI	GGYRCC	1 cut(s)	818
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	470
BsnI	GGCC	2 cut(s)	448, 711
Bsp143I	GATC	3 cut(s)	8, 36, 99
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	448, 711
BspLI	GGNNCC	4 cut(s)	192, 630, 670, 820
BspMAI	CTGCAG	2 cut(s)	772, 871
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	16, 31
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	582, 822
BssECI	CCNNGG	2 cut(s)	40, 443
BssMI	GATC	3 cut(s)	8, 36, 99
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	2 cut(s)	40, 443
Bst2BI	CACGAG	1 cut(s)	834
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	79, 154, 878
Bst6I	CTCTTC	2 cut(s)	224, 723
BstC8I	GCNNGC	4 cut(s)	385, 502, 506, 510
BstDEI	CTNAG	2 cut(s)	210, 335
BstF5I	GGATG	1 cut(s)	761
BstKTI	GATC	3 cut(s)	11, 39, 102
BstMBI	GATC	3 cut(s)	8, 36, 99
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 659, 869
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	3 cut(s)	388, 768, 867
BstV1I	GCAGC	6 cut(s)	367, 415, 484, 637, 674, 782
BsuRI	GGCC	2 cut(s)	448, 711
BtsCI	GGATG	1 cut(s)	761
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	4 cut(s)	385, 502, 506, 510
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr13I	GGNCC	1 cut(s)	601
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	268, 585, 819
CviAII	CATG	2 cut(s)	186, 302
CviQI	GTAC	3 cut(s)	268, 585, 819
DdeI	CTNAG	2 cut(s)	210, 335
DpnI	GATC	3 cut(s)	10, 38, 101
DpnII	GATC	3 cut(s)	8, 36, 99
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	224, 723
EarI	CTCTTC	2 cut(s)	224, 723
Eco130I	CCWWGG	2 cut(s)	40, 443
Eco147I	AGGCCT	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	3 cut(s)	579, 747, 771
EcoRII	CCWGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	40, 443
ErhI	CCWWGG	2 cut(s)	40, 443
FaeI	CATG	2 cut(s)	189, 305
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	2 cut(s)	185, 301
Fnu4HI	GCNGC	7 cut(s)	381, 429, 498, 651, 663, 771, 870
FokI	GGATG	1 cut(s)	748
Fsp4HI	GCNGC	7 cut(s)	381, 429, 498, 651, 663, 771, 870
FspBI	CTAG	2 cut(s)	342, 594
GluI	GCNGC	7 cut(s)	381, 429, 498, 651, 663, 771, 870
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	448, 711
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	189, 305
HinfI	GANTC	2 cut(s)	272, 701
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	182, 362
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	286, 809
HpyCH4III	ACNGT	3 cut(s)	79, 154, 878
HpyCH4V	TGCA	7 cut(s)	296, 383, 418, 745, 770, 863, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 659, 869
HpyF3I	CTNAG	2 cut(s)	210, 335
Hsp92II	CATG	2 cut(s)	189, 305
KpnI	GGTACC	1 cut(s)	822
Kzo9I	GATC	3 cut(s)	8, 36, 99
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	4 cut(s)	517, 523, 634, 697
Lsp1109I	GCAGC	6 cut(s)	367, 415, 484, 637, 674, 782
LweI	GCATC	3 cut(s)	163, 848, 872
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	2 cut(s)	342, 594
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	3 cut(s)	10, 38, 101
MboI	GATC	3 cut(s)	8, 36, 99
MboII	GAAGA	4 cut(s)	211, 572, 582, 740
MlsI	TGGCCA	1 cut(s)	711
MluNI	TGGCCA	1 cut(s)	711
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	17, 459, 724, 730, 775
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	711
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	56, 659, 869
NdeII	GATC	3 cut(s)	8, 36, 99
NlaIII	CATG	2 cut(s)	189, 305
NlaIV	GGNNCC	4 cut(s)	192, 630, 670, 820
NmuCI	GTSAC	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	272, 701
PkrI	GCNGC	7 cut(s)	382, 430, 499, 652, 664, 772, 871
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	192, 630, 670, 820
PspPI	GGNCC	1 cut(s)	601
PstI	CTGCAG	2 cut(s)	772, 871
PstNI	CAGNNNCTG	1 cut(s)	776
RsaI	GTAC	3 cut(s)	269, 586, 820
RsaNI	GTAC	3 cut(s)	268, 585, 819
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	845
SatI	GCNGC	7 cut(s)	381, 429, 498, 651, 663, 771, 870
Sau3AI	GATC	3 cut(s)	8, 36, 99
Sau96I	GGNCC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	471
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	3 cut(s)	163, 848, 872
SfcI	CTRYAG	3 cut(s)	388, 768, 867
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	306
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	2 cut(s)	342, 594
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	2 cut(s)	40, 443
TaaI	ACNGT	3 cut(s)	79, 154, 878
TaqI	TCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	272, 701
Tru1I	TTAA	1 cut(s)	845
Tru9I	TTAA	1 cut(s)	845
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	7 cut(s)	380, 428, 497, 650, 662, 770, 869
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	174, 211
TspRI	CASTG	1 cut(s)	762
VpaK11BI	GGWCC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	342, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.