Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Forward (+)

1065748 .. 1067043

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1014000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCCGCAAGCACCGTCACTTCCCCGCCTCCACTCTCCCTTCCTCTCTTGCCCCCTCAAGCTCTCCACCTCCCCTTCTTCCTTACGCGTGCCCCACAAGTTTGCAGGAAATCAACGGTCGCCAAAGTCGCATCCATGCATCAGAGCCATTGATCTCGATCAAAACACGGTAGTGGCAATCTCAGTAGGGTTTGCGAGTGTTGCGGTTGGGATTGGCATTCCGGTTTTCTACGAAACACAGATCGACAGCGCTGCTAAGAGAGACAACACTCAGCCATGCTTCCCCTGCAACGGAACTGGCGCTCAAAAATGCAGATTCTGCACGGGGAGTGGGACGGTGACAGTAGAGCTTGGCGGGGGCGAGAAAGAAGTGTCCAACTGCATCAACTGCGAAGGGGTCGGTTCGTTTACGTGCACAACGTGTCAGGGTTCCGGGATTCAACCTCGGTACCTTGATCGCAGAGTTCAAGGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.77

Weight (kDa)

8.9

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5351	PF17302	104 - 135	6.2e-08	Family of unknown function (DUF5351)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	447
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	5, 25, 203, 354
AdeI	CACNNNGTG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	85, 419
AgsI	TTSAA	2 cut(s)	440, 467
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	61, 349
AluI	AGCT	2 cut(s)	61, 349
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	412
AlwNI	CAGNNNCTG	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	251, 302
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	349
BaeGI	GKGCMC	2 cut(s)	93, 416
BaeI	ACNNNNGTAYC	2 cut(s)	431, 464
BanI	GGYRCC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	255
BfoI	RGCGCY	2 cut(s)	252, 303
BisI	GCNGC	2 cut(s)	5, 252
BlsI	GCNGC	2 cut(s)	6, 253
Bme1390I	CCNGG	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	430, 449
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	3 cut(s)	139, 147, 390
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	195, 284
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	2 cut(s)	93, 416
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	221, 432
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	93, 416
Bsp143I	GATC	4 cut(s)	151, 157, 240, 454
BspACI	CCGC	4 cut(s)	5, 25, 203, 354
BspCNI	CTCAG	2 cut(s)	194, 283
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	430, 449
BspT107I	GGYRCC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	4 cut(s)	151, 157, 240, 454
Bst4CI	ACNGT	5 cut(s)	15, 117, 169, 337, 343
BstAPI	GCANNNNNTGC	2 cut(s)	318, 387
BstBAI	YACGTR	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	9, 89
BstDEI	CTNAG	3 cut(s)	181, 255, 270
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	252, 303
BstHHI	GCGC	2 cut(s)	251, 302
BstKTI	GATC	4 cut(s)	154, 160, 243, 457
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	151, 157, 240, 454
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 200, 285, 318, 387
BstSCI	CCNGG	1 cut(s)	431
BstSLI	GKGCMC	2 cut(s)	93, 416
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	9, 89
CaiI	CAGNNNCTG	1 cut(s)	318
CfoI	GCGC	2 cut(s)	251, 302
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	2 cut(s)	135, 276
CviJI	RGCY	4 cut(s)	61, 146, 274, 349
CviKI_1	RGCY	4 cut(s)	61, 146, 274, 349
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	181, 255, 270
DpnI	GATC	4 cut(s)	153, 159, 242, 456
DpnII	GATC	4 cut(s)	151, 157, 240, 454
DraIII	CACNNNGTG	1 cut(s)	420
Eco47III	AGCGCT	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	2 cut(s)	138, 279
FaiI	YATR	2 cut(s)	136, 277
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	134, 275
FauI	CCCGC	2 cut(s)	32, 347
Fnu4HI	GCNGC	2 cut(s)	5, 252
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	5, 252
GlaI	GCGC	2 cut(s)	250, 301
GluI	GCNGC	2 cut(s)	5, 252
HaeII	RGCGCY	2 cut(s)	252, 303
HapII	CCGG	2 cut(s)	221, 432
HhaI	GCGC	2 cut(s)	251, 302
Hin1II	CATG	2 cut(s)	138, 279
Hin6I	GCGC	2 cut(s)	249, 300
HinP1I	GCGC	2 cut(s)	249, 300
HinfI	GANTC	2 cut(s)	315, 436
HpaII	CCGG	2 cut(s)	221, 432
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	408, 414
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	408, 414
HpyAV	CCTTC	3 cut(s)	49, 84, 386
HpyCH4III	ACNGT	5 cut(s)	15, 117, 169, 337, 343
HpyCH4IV	ACGT	2 cut(s)	410, 419
HpyCH4V	TGCA	7 cut(s)	104, 138, 288, 312, 321, 381, 414
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 200, 285, 318, 387
HpyF3I	CTNAG	3 cut(s)	181, 255, 270
HpySE526I	ACGT	2 cut(s)	410, 419
Hsp92II	CATG	2 cut(s)	138, 279
HspAI	GCGC	2 cut(s)	249, 300
KpnI	GGTACC	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	151, 157, 240, 454
LpnPI	CCDG	6 cut(s)	90, 234, 282, 298, 410, 445
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	3 cut(s)	139, 147, 390
MaeII	ACGT	2 cut(s)	410, 419
MaeIII	GTNAC	2 cut(s)	15, 337
MalI	GATC	4 cut(s)	153, 159, 242, 456
MboI	GATC	4 cut(s)	151, 157, 240, 454
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	93, 416
MluI	ACGCGT	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	5 cut(s)	38, 53, 65, 79, 453
Mph1103I	ATGCAT	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	221, 432
MspR9I	CCNGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	127, 200, 285, 318, 387
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	151, 157, 240, 454
NlaIII	CATG	2 cut(s)	138, 279
NlaIV	GGNNCC	2 cut(s)	430, 449
NmuCI	GTSAC	2 cut(s)	15, 337
NsiI	ATGCAT	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	315, 436
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	6, 253
Ppu21I	YACGTR	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	430, 449
PstNI	CAGNNNCTG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	2 cut(s)	5, 252
Sau3AI	GATC	4 cut(s)	151, 157, 240, 454
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	2 cut(s)	93, 416
SetI	ASST	7 cut(s)	63, 71, 351, 413, 422, 445, 453
SfaNI	GCATC	3 cut(s)	139, 147, 390
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	4 cut(s)	5, 25, 203, 354
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	5 cut(s)	15, 117, 169, 337, 343
TaiI	ACGT	2 cut(s)	413, 422
TaqI	TCGA	2 cut(s)	156, 243
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	315, 436
TseFI	GTSAC	2 cut(s)	15, 337
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	15, 337
TspGWI	ACGGA	1 cut(s)	306
VneI	GTGCAC	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.