Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Forward (+)

33609355 .. 33610448

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G367000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCACTAGCGCCCTCAATTCCCCGCCTTCACTCTCCCTTCCTCTGCTGCCCCCTCAAGCTCTCCACGTCTCCTTCTTCTTTATGTATATCCCACAAATTTGCAGGAAATCAACGGTCGCCCAGGTCCTATCCATGCATTAGAGCTCTGGATCTTGATCAAAACACGGTTGTGGCAATCTCAGTTGGGTTGGTGAGTGTTGCAGTTGGGATTGGCATTCCGGTTTTCTATGAAACCCAAATTGACAGTGCTGCAAAGCGAGACAACACTCAGCCATGCTTCCCTTGCAGTGGAACTGGCGCACAAAAATGCAGGTTTTGTACGGGAACTGGCACAGTCGTAGTGGAGCTTGGTGGGGATGAGAAAGAAGTGTCTAACTGCATTAATTGTGACGGGGTGGGTTCGTTTACTTGCACCACATGCCAAGGTTCTGGGATTCAACCTCGCTACCTTGATCGCAGAGAATTCAAAGACGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.1

Weight (kDa)

6.69

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	98, 464
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	440, 469
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	122
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	3 cut(s)	61, 146, 349
AluI	AGCT	3 cut(s)	61, 146, 349
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	75, 255
AlwI	GGATC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	48, 251
ApoI	RAATTY	2 cut(s)	98, 464
AseI	ATTAAT	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	13, 302
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	35, 238
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	75, 255
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	2 cut(s)	49, 252
BlsI	GCNGC	2 cut(s)	50, 253
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	126
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	122, 424
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	301, 334
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	122, 424
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	195, 284
BseNI	ACTGG	2 cut(s)	301, 334
BseXI	GCAGC	2 cut(s)	35, 238
Bsh1285I	CGRYCG	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	75, 255
BsmBI	CGTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	151, 157, 454
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	194, 283
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	301, 334
BssECI	CCNNGG	2 cut(s)	122, 424
BssMI	GATC	3 cut(s)	151, 157, 454
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	4 cut(s)	117, 169, 248, 337
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	181, 270
BstF5I	GGATG	1 cut(s)	364
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 302
BstKTI	GATC	3 cut(s)	154, 160, 457
BstMAI	GTCTC	2 cut(s)	75, 255
BstMBI	GATC	3 cut(s)	151, 157, 454
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 420
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	35, 238
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	253, 295
BveI	ACCTGC	1 cut(s)	303
CfoI	GCGC	2 cut(s)	13, 302
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	3 cut(s)	135, 276, 420
CviJI	RGCY	4 cut(s)	61, 146, 274, 349
CviKI_1	RGCY	4 cut(s)	61, 146, 274, 349
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	181, 270
DpnI	GATC	3 cut(s)	153, 159, 456
DpnII	GATC	3 cut(s)	151, 157, 454
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	3 cut(s)	138, 279, 423
FaiI	YATR	6 cut(s)	85, 89, 136, 231, 277, 421
FatI	CATG	3 cut(s)	134, 275, 419
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	49, 252
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	49, 252
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	12, 301
GluI	GCNGC	2 cut(s)	49, 252
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	2 cut(s)	13, 302
Hin1II	CATG	3 cut(s)	138, 279, 423
Hin6I	GCGC	2 cut(s)	11, 300
HinP1I	GCGC	2 cut(s)	11, 300
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	149, 155
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	3 cut(s)	38, 49, 84
HpyCH4III	ACNGT	4 cut(s)	117, 169, 248, 337
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	8 cut(s)	104, 138, 203, 254, 288, 312, 381, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 420
HpyF3I	CTNAG	2 cut(s)	181, 270
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	138, 279, 423
HspAI	GCGC	2 cut(s)	11, 300
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	151, 157, 454
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	90, 109, 134, 136, 234, 282, 298, 315, 417
Lsp1109I	GCAGC	2 cut(s)	35, 238
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	3, 389
MalI	GATC	3 cut(s)	153, 159, 456
MboI	GATC	3 cut(s)	151, 157, 454
MboII	GAAGA	1 cut(s)	69
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	5 cut(s)	18, 98, 240, 385, 464
MnlI	CCTC	4 cut(s)	25, 53, 65, 453
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	170, 307
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	285, 420
NdeII	GATC	3 cut(s)	151, 157, 454
NlaIII	CATG	3 cut(s)	138, 279, 423
NmuCI	GTSAC	2 cut(s)	3, 389
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	423
OliI	CACNNNNGTG	1 cut(s)	170
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	50, 253
PpuMI	RGGWCCY	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	170, 307
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	49, 252
Sau3AI	GATC	3 cut(s)	151, 157, 454
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	63, 71, 128, 148, 317, 351, 430, 445, 453
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	170, 307
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	18, 98, 240, 385, 464
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	4 cut(s)	117, 169, 248, 337
TaiI	ACGT	1 cut(s)	71
TasI	AATT	5 cut(s)	18, 98, 240, 385, 464
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	253, 295
TseFI	GTSAC	2 cut(s)	3, 389
TseI	GCWGC	2 cut(s)	48, 251
Tsp45I	GTSAC	2 cut(s)	3, 389
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	253, 295
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	2 cut(s)	98, 464
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.