zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G75710 |
| fragaria_vesca | FvH4_2g38560 |
| malus_domestica | MD08G1013600.v1.1 MD15G1013200.v1.1 |
| prunus_persica | Prupe.1G366300_v2.0.a1 |
| pyrus_communis | pycom08g01220 pycom15g01140 |
| rosa_chinensis | RchiOBHm_Chr6g0302741 |
| rosa_laevigata | RLG00000011142 |
| rosa_multiflora | Rmu_sc0009897.1_g000007 Rmu_sc0017617.1_g000001 Rmu_ssc0000460.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165360 |
| rosa_rugosa | Rorug06G0316700 |
| rosa_samantha | Rh6AG430000 Rh6BG472500 Rh6CG442500 Rh6DG429200 |
| rosa_wichuraiana | Rw6G037240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1332 |
| Acc36I | ACCTGC | 1 cut(s) | 576 |
| AccB1I | GGYRCC | 1 cut(s) | 37 |
| AccII | CGCG | 2 cut(s) | 81, 856 |
| AccIII | TCCGGA | 2 cut(s) | 548, 700 |
| AciI | CCGC | 8 cut(s) | 122, 894, 1041, 1089, 1190, 1193, 1211, 1286 |
| AclWI | GGATC | 2 cut(s) | 218, 811 |
| AcyI | GRCGYC | 2 cut(s) | 38, 996 |
| AfaI | GTAC | 3 cut(s) | 144, 814, 1270 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 374, 992, 1071 |
| AflIII | ACRYGT | 1 cut(s) | 498 |
| AgsI | TTSAA | 3 cut(s) | 650, 739, 866 |
| AjiI | CACGTC | 2 cut(s) | 322, 501 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| AleI | CACNNNNGTG | 1 cut(s) | 341 |
| Alw21I | GWGCWC | 3 cut(s) | 862, 912, 955 |
| Alw26I | GTCTC | 5 cut(s) | 312, 395, 453, 459, 834 |
| Alw44I | GTGCAC | 1 cut(s) | 858 |
| AlwI | GGATC | 2 cut(s) | 218, 811 |
| Ama87I | CYCGRG | 2 cut(s) | 580, 1336 |
| Aor13HI | TCCGGA | 2 cut(s) | 548, 700 |
| ApaLI | GTGCAC | 1 cut(s) | 858 |
| ApeKI | GCWGC | 4 cut(s) | 154, 297, 309, 1086 |
| AspA2I | CCTAGG | 1 cut(s) | 602 |
| AspLEI | GCGC | 2 cut(s) | 40, 856 |
| AspS9I | GGNCC | 3 cut(s) | 169, 248, 698 |
| AsuHPI | GGTGA | 1 cut(s) | 357 |
| AsuII | TTCGAA | 1 cut(s) | 1307 |
| AvaI | CYCGRG | 2 cut(s) | 580, 1336 |
| AvaII | GGWCC | 3 cut(s) | 169, 248, 698 |
| AvrII | CCTAGG | 1 cut(s) | 602 |
| BaeGI | GKGCMC | 1 cut(s) | 862 |
| BanI | GGYRCC | 1 cut(s) | 37 |
| BanII | GRGCYC | 2 cut(s) | 912, 955 |
| BauI | CACGAG | 2 cut(s) | 339, 954 |
| Bbv12I | GWGCWC | 3 cut(s) | 862, 912, 955 |
| BbvCI | CCTCAGC | 1 cut(s) | 1109 |
| BbvI | GCAGC | 4 cut(s) | 166, 309, 321, 1098 |
| BccI | CCATC | 2 cut(s) | 166, 776 |
| BceAI | ACGGC | 4 cut(s) | 346, 916, 1095, 1134 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 184, 218 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BciVI | GTATCC | 1 cut(s) | 600 |
| BclI | TGATCA | 1 cut(s) | 358 |
| BcoDI | GTCTC | 5 cut(s) | 312, 395, 453, 459, 834 |
| BfaI | CTAG | 2 cut(s) | 63, 603 |
| BfmI | CTRYAG | 1 cut(s) | 1206 |
| BfoI | RGCGCY | 1 cut(s) | 41 |
| BfuAI | ACCTGC | 1 cut(s) | 576 |
| BfuI | GTATCC | 1 cut(s) | 600 |
| BglII | AGATCT | 1 cut(s) | 476 |
| BisI | GCNGC | 6 cut(s) | 155, 298, 310, 894, 1087, 1191 |
| BlnI | CCTAGG | 1 cut(s) | 602 |
| BlsI | GCNGC | 6 cut(s) | 156, 299, 311, 895, 1088, 1192 |
| Bme1390I | CCNGG | 1 cut(s) | 426 |
| Bme18I | GGWCC | 3 cut(s) | 169, 248, 698 |
| BmeT110I | CYCGRG | 2 cut(s) | 580, 1336 |
| BmgBI | CACGTC | 2 cut(s) | 322, 501 |
| BmgT120I | GGNCC | 3 cut(s) | 169, 248, 698 |
| BmiI | GGNNCC | 3 cut(s) | 39, 170, 1048 |
| BmrFI | CCNGG | 1 cut(s) | 426 |
| BmsI | GCATC | 4 cut(s) | 871, 1114, 1128, 1186 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1223, 1255 |
| BpmI | CTGGAG | 1 cut(s) | 1317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1109 |
| Bpu14I | TTCGAA | 1 cut(s) | 1307 |
| BpuEI | CTTGAG | 1 cut(s) | 1334 |
| BsaHI | GRCGYC | 2 cut(s) | 38, 996 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 3 cut(s) | 602, 1015, 1024 |
| BsaWI | WCCGGW | 2 cut(s) | 548, 700 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1038, 1068, 1205, 1235 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 374, 992, 1071 |
| Bse118I | RCCGGY | 2 cut(s) | 1064, 1186 |
| Bse1I | ACTGG | 1 cut(s) | 486 |
| BseAI | TCCGGA | 2 cut(s) | 548, 700 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseDI | CCNNGG | 3 cut(s) | 602, 1015, 1024 |
| BseGI | GGATG | 2 cut(s) | 557, 1201 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 374, 992, 1071 |
| BseMII | CTCAG | 1 cut(s) | 1100 |
| BseNI | ACTGG | 1 cut(s) | 486 |
| BseRI | GAGGAG | 3 cut(s) | 1059, 1144, 1331 |
| BseSI | GKGCMC | 1 cut(s) | 862 |
| BseXI | GCAGC | 4 cut(s) | 166, 309, 321, 1098 |
| BseYI | CCCAGC | 1 cut(s) | 1160 |
| BsgI | GTGCAG | 3 cut(s) | 316, 910, 985 |
| Bsh1236I | CGCG | 2 cut(s) | 81, 856 |
| BshNI | GGYRCC | 1 cut(s) | 37 |
| BsiHKAI | GWGCWC | 3 cut(s) | 862, 912, 955 |
| BsiHKCI | CYCGRG | 2 cut(s) | 580, 1336 |
| BsiSI | CCGG | 5 cut(s) | 23, 549, 701, 1065, 1187 |
| BsiWI | CGTACG | 1 cut(s) | 812 |
| BslFI | GGGAC | 2 cut(s) | 182, 750 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 374, 992, 1071 |
| BsmAI | GTCTC | 5 cut(s) | 312, 395, 453, 459, 834 |
| BsmBI | CGTCTC | 3 cut(s) | 312, 453, 834 |
| BsmFI | GGGAC | 2 cut(s) | 182, 750 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| BsoBI | CYCGRG | 2 cut(s) | 580, 1336 |
| Bsp119I | TTCGAA | 1 cut(s) | 1307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 862, 912, 955 |
| Bsp13I | TCCGGA | 2 cut(s) | 548, 700 |
| Bsp143I | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| BspACI | CCGC | 8 cut(s) | 122, 894, 1041, 1089, 1190, 1193, 1211, 1286 |
| BspCNI | CTCAG | 1 cut(s) | 1101 |
| BspEI | TCCGGA | 2 cut(s) | 548, 700 |
| BspFNI | CGCG | 2 cut(s) | 81, 856 |
| BspLI | GGNNCC | 3 cut(s) | 39, 170, 1048 |
| BspMI | ACCTGC | 1 cut(s) | 576 |
| BspPI | GGATC | 2 cut(s) | 218, 811 |
| BspQI | GCTCTTC | 2 cut(s) | 967, 1087 |
| BspT104I | TTCGAA | 1 cut(s) | 1307 |
| BspT107I | GGYRCC | 1 cut(s) | 37 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BsrFI | RCCGGY | 2 cut(s) | 1064, 1186 |
| BsrI | ACTGG | 1 cut(s) | 486 |
| BssAI | RCCGGY | 2 cut(s) | 1064, 1186 |
| BssECI | CCNNGG | 3 cut(s) | 602, 1015, 1024 |
| BssMI | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| BssNI | GRCGYC | 2 cut(s) | 38, 996 |
| BssSI | CACGAG | 2 cut(s) | 339, 954 |
| BssT1I | CCWWGG | 2 cut(s) | 602, 1024 |
| Bst2BI | CACGAG | 2 cut(s) | 339, 954 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 6 cut(s) | 437, 764, 825, 1006, 1019, 1228 |
| Bst6I | CTCTTC | 2 cut(s) | 967, 1087 |
| BstACI | GRCGYC | 2 cut(s) | 38, 996 |
| BstBI | TTCGAA | 1 cut(s) | 1307 |
| BstC8I | GCNNGC | 3 cut(s) | 749, 858, 1084 |
| BstDEI | CTNAG | 2 cut(s) | 655, 1109 |
| BstDSI | CCRYGG | 1 cut(s) | 1015 |
| BstF5I | GGATG | 2 cut(s) | 557, 1201 |
| BstFNI | CGCG | 2 cut(s) | 81, 856 |
| BstH2I | RGCGCY | 1 cut(s) | 41 |
| BstHHI | GCGC | 2 cut(s) | 40, 856 |
| BstKTI | GATC | 8 cut(s) | 226, 361, 479, 573, 732, 780, 819, 1158 |
| BstMAI | GTCTC | 5 cut(s) | 312, 395, 453, 459, 834 |
| BstMBI | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 294, 306, 851, 866, 890, 1055, 1196, 1292 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstSCI | CCNGG | 1 cut(s) | 424 |
| BstSFI | CTRYAG | 1 cut(s) | 1206 |
| BstSLI | GKGCMC | 1 cut(s) | 862 |
| BstUI | CGCG | 2 cut(s) | 81, 856 |
| BstV1I | GCAGC | 4 cut(s) | 166, 309, 321, 1098 |
| BstX2I | RGATCY | 1 cut(s) | 476 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 165 |
| BstYI | RGATCY | 1 cut(s) | 476 |
| BsuI | GTATCC | 1 cut(s) | 600 |
| BtgI | CCRYGG | 1 cut(s) | 1015 |
| BtgZI | GCGATG | 1 cut(s) | 1134 |
| BtrI | CACGTC | 2 cut(s) | 322, 501 |
| BtsCI | GGATG | 2 cut(s) | 557, 1201 |
| BtsI | GCAGTG | 2 cut(s) | 852, 922 |
| BtsIMutI | CAGTG | 3 cut(s) | 493, 852, 922 |
| BveI | ACCTGC | 1 cut(s) | 576 |
| Cac8I | GCNNGC | 3 cut(s) | 749, 858, 1084 |
| CfoI | GCGC | 2 cut(s) | 40, 856 |
| Cfr10I | RCCGGY | 2 cut(s) | 1064, 1186 |
| Cfr13I | GGNCC | 3 cut(s) | 169, 248, 698 |
| CseI | GACGC | 2 cut(s) | 851, 985 |
| CsiI | ACCWGGT | 1 cut(s) | 424 |
| Csp6I | GTAC | 3 cut(s) | 143, 813, 1269 |
| CviAII | CATG | 5 cut(s) | 165, 221, 256, 529, 568 |
| CviQI | GTAC | 3 cut(s) | 143, 813, 1269 |
| DdeI | CTNAG | 2 cut(s) | 655, 1109 |
| DinI | GGCGCC | 1 cut(s) | 39 |
| DpnI | GATC | 8 cut(s) | 225, 360, 478, 572, 731, 779, 818, 1157 |
| DpnII | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| Eam1104I | CTCTTC | 2 cut(s) | 967, 1087 |
| EarI | CTCTTC | 2 cut(s) | 967, 1087 |
| EciI | GGCGGA | 2 cut(s) | 1056, 1208 |
| Ecl136II | GAGCTC | 2 cut(s) | 910, 953 |
| Eco130I | CCWWGG | 2 cut(s) | 602, 1024 |
| Eco24I | GRGCYC | 2 cut(s) | 912, 955 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 3 cut(s) | 169, 248, 698 |
| Eco53kI | GAGCTC | 2 cut(s) | 910, 953 |
| Eco88I | CYCGRG | 2 cut(s) | 580, 1336 |
| EcoICRI | GAGCTC | 2 cut(s) | 910, 953 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 2 cut(s) | 602, 1024 |
| EcoT38I | GRGCYC | 2 cut(s) | 912, 955 |
| EgeI | GGCGCC | 1 cut(s) | 39 |
| EheI | GGCGCC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 2 cut(s) | 602, 1024 |
| Esp3I | CGTCTC | 3 cut(s) | 312, 453, 834 |
| FaeI | CATG | 5 cut(s) | 168, 224, 259, 532, 571 |
| FaqI | GGGAC | 2 cut(s) | 182, 750 |
| FatI | CATG | 5 cut(s) | 164, 220, 255, 528, 567 |
| FbaI | TGATCA | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 6 cut(s) | 155, 298, 310, 894, 1087, 1191 |
| FokI | GGATG | 2 cut(s) | 564, 1208 |
| FriOI | GRGCYC | 2 cut(s) | 912, 955 |
| Fsp4HI | GCNGC | 6 cut(s) | 155, 298, 310, 894, 1087, 1191 |
| FspBI | CTAG | 2 cut(s) | 63, 603 |
| GlaI | GCGC | 2 cut(s) | 39, 855 |
| GluI | GCNGC | 6 cut(s) | 155, 298, 310, 894, 1087, 1191 |
| GsaI | CCCAGC | 1 cut(s) | 1164 |
| GsuI | CTGGAG | 1 cut(s) | 1317 |
| HaeII | RGCGCY | 1 cut(s) | 41 |
| HapII | CCGG | 5 cut(s) | 23, 549, 701, 1065, 1187 |
| HgaI | GACGC | 2 cut(s) | 851, 985 |
| HhaI | GCGC | 2 cut(s) | 40, 856 |
| Hin1I | GRCGYC | 2 cut(s) | 38, 996 |
| Hin1II | CATG | 5 cut(s) | 168, 224, 259, 532, 571 |
| Hin6I | GCGC | 2 cut(s) | 38, 854 |
| HinP1I | GCGC | 2 cut(s) | 38, 854 |
| HincII | GTYRAC | 4 cut(s) | 431, 510, 577, 1224 |
| HindII | GTYRAC | 4 cut(s) | 431, 510, 577, 1224 |
| HindIII | AAGCTT | 3 cut(s) | 281, 644, 652 |
| HinfI | GANTC | 8 cut(s) | 216, 403, 415, 707, 1009, 1277, 1309, 1382 |
| HpaII | CCGG | 5 cut(s) | 23, 549, 701, 1065, 1187 |
| HphI | GGTGA | 1 cut(s) | 357 |
| Hpy166II | GTNNAC | 8 cut(s) | 431, 510, 542, 577, 799, 860, 944, 1224 |
| Hpy188I | TCNGA | 8 cut(s) | 150, 400, 414, 420, 594, 691, 777, 950 |
| Hpy188III | TCNNGA | 6 cut(s) | 178, 213, 549, 701, 1313, 1386 |
| Hpy8I | GTNNAC | 8 cut(s) | 431, 510, 542, 577, 799, 860, 944, 1224 |
| Hpy99I | CGWCG | 4 cut(s) | 295, 902, 1058, 1081 |
| HpyAV | CCTTC | 4 cut(s) | 200, 237, 285, 844 |
| HpyCH4III | ACNGT | 6 cut(s) | 437, 764, 825, 1006, 1019, 1228 |
| HpyCH4IV | ACGT | 8 cut(s) | 59, 321, 372, 500, 811, 916, 1053, 1271 |
| HpyCH4V | TGCA | 7 cut(s) | 195, 297, 309, 532, 860, 927, 1002 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 294, 306, 851, 866, 890, 1055, 1196, 1292 |
| HpyF3I | CTNAG | 2 cut(s) | 655, 1109 |
| HpySE526I | ACGT | 8 cut(s) | 59, 321, 372, 500, 811, 916, 1053, 1271 |
| Hsp92I | GRCGYC | 2 cut(s) | 38, 996 |
| Hsp92II | CATG | 5 cut(s) | 168, 224, 259, 532, 571 |
| HspAI | GCGC | 2 cut(s) | 38, 854 |
| KasI | GGCGCC | 1 cut(s) | 37 |
| Kpn2I | TCCGGA | 2 cut(s) | 548, 700 |
| Ksp22I | TGATCA | 1 cut(s) | 358 |
| Kzo9I | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| LguI | GCTCTTC | 2 cut(s) | 967, 1087 |
| LmnI | GCTCC | 4 cut(s) | 305, 950, 1046, 1318 |
| Lsp1109I | GCAGC | 4 cut(s) | 166, 309, 321, 1098 |
| LweI | GCATC | 4 cut(s) | 871, 1114, 1128, 1186 |
| MabI | ACCWGGT | 1 cut(s) | 424 |
| MaeI | CTAG | 2 cut(s) | 63, 603 |
| MaeII | ACGT | 8 cut(s) | 59, 321, 372, 500, 811, 916, 1053, 1271 |
| MaeIII | GTNAC | 5 cut(s) | 377, 494, 554, 563, 677 |
| MalI | GATC | 8 cut(s) | 225, 360, 478, 572, 731, 779, 818, 1157 |
| MboI | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| MboII | GAAGA | 9 cut(s) | 145, 153, 432, 435, 954, 957, 1104, 1228, 1248 |
| MflI | RGATCY | 1 cut(s) | 476 |
| MhlI | GDGCHC | 3 cut(s) | 862, 912, 955 |
| Mly113I | GGCGCC | 1 cut(s) | 38 |
| MlyI | GAGTC | 4 cut(s) | 225, 397, 409, 1271 |
| MmeI | TCCRAC | 2 cut(s) | 844, 1228 |
| MroI | TCCGGA | 2 cut(s) | 548, 700 |
| MseI | TTAA | 3 cut(s) | 753, 791, 1170 |
| MslI | CAYNNNNRTG | 2 cut(s) | 163, 341 |
| MspA1I | CMGCKG | 2 cut(s) | 1089, 1211 |
| MspI | CCGG | 5 cut(s) | 23, 549, 701, 1065, 1187 |
| MspR9I | CCNGG | 1 cut(s) | 426 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MvnI | CGCG | 2 cut(s) | 81, 856 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 294, 306, 851, 866, 890, 1055, 1196, 1292 |
| NarI | GGCGCC | 1 cut(s) | 38 |
| NdeII | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| NlaIII | CATG | 5 cut(s) | 168, 224, 259, 532, 571 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 170, 1048 |
| NmeAIII | GCCGAG | 3 cut(s) | 362, 385, 863 |
| NmuCI | GTSAC | 2 cut(s) | 563, 677 |
| NspV | TTCGAA | 1 cut(s) | 1307 |
| OliI | CACNNNNGTG | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 2 cut(s) | 967, 1087 |
| PfeI | GAWTC | 4 cut(s) | 707, 1009, 1309, 1382 |
| Pfl23II | CGTACG | 1 cut(s) | 812 |
| PkrI | GCNGC | 6 cut(s) | 156, 299, 311, 895, 1088, 1192 |
| PleI | GAGTC | 4 cut(s) | 224, 397, 409, 1271 |
| PluTI | GGCGCC | 1 cut(s) | 41 |
| PpsI | GAGTC | 4 cut(s) | 224, 397, 409, 1271 |
| PsiI | TTATAA | 1 cut(s) | 1332 |
| Psp124BI | GAGCTC | 2 cut(s) | 912, 955 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspFI | CCCAGC | 1 cut(s) | 1160 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspLI | CGTACG | 1 cut(s) | 812 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 170, 1048 |
| PspPI | GGNCC | 3 cut(s) | 169, 248, 698 |
| PsuI | RGATCY | 1 cut(s) | 476 |
| RsaI | GTAC | 3 cut(s) | 144, 814, 1270 |
| RsaNI | GTAC | 3 cut(s) | 143, 813, 1269 |
| RseI | CAYNNNNRTG | 2 cut(s) | 163, 341 |
| SacI | GAGCTC | 2 cut(s) | 912, 955 |
| SapI | GCTCTTC | 2 cut(s) | 967, 1087 |
| SaqAI | TTAA | 3 cut(s) | 753, 791, 1170 |
| SatI | GCNGC | 6 cut(s) | 155, 298, 310, 894, 1087, 1191 |
| Sau3AI | GATC | 8 cut(s) | 223, 358, 476, 570, 729, 777, 816, 1155 |
| Sau96I | GGNCC | 3 cut(s) | 169, 248, 698 |
| SchI | GAGTC | 4 cut(s) | 225, 397, 409, 1271 |
| ScrFI | CCNGG | 1 cut(s) | 426 |
| SduI | GDGCHC | 3 cut(s) | 862, 912, 955 |
| SexAI | ACCWGGT | 1 cut(s) | 424 |
| SfaNI | GCATC | 4 cut(s) | 871, 1114, 1128, 1186 |
| SfcI | CTRYAG | 1 cut(s) | 1206 |
| SfoI | GGCGCC | 1 cut(s) | 39 |
| SfuI | TTCGAA | 1 cut(s) | 1307 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1064 |
| SinI | GGWCC | 3 cut(s) | 169, 248, 698 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 163, 341 |
| SmlI | CTYRAG | 1 cut(s) | 1313 |
| SmoI | CTYRAG | 1 cut(s) | 1313 |
| SsiI | CCGC | 8 cut(s) | 122, 894, 1041, 1089, 1190, 1193, 1211, 1286 |
| SspDI | GGCGCC | 1 cut(s) | 37 |
| SspMI | CTAG | 2 cut(s) | 63, 603 |
| SstI | GAGCTC | 2 cut(s) | 912, 955 |
| StyD4I | CCNGG | 1 cut(s) | 424 |
| StyI | CCWWGG | 2 cut(s) | 602, 1024 |
| TaaI | ACNGT | 6 cut(s) | 437, 764, 825, 1006, 1019, 1228 |
| TaiI | ACGT | 8 cut(s) | 62, 324, 375, 503, 814, 919, 1056, 1274 |
| TaqI | TCGA | 5 cut(s) | 204, 715, 780, 1259, 1307 |
| TaqII | GACCGA | 1 cut(s) | 441 |
| TauI | GCSGC | 2 cut(s) | 896, 1193 |
| TfiI | GAWTC | 4 cut(s) | 707, 1009, 1309, 1382 |
| Tru1I | TTAA | 3 cut(s) | 753, 791, 1170 |
| Tru9I | TTAA | 3 cut(s) | 753, 791, 1170 |
| TscAI | CASTG | 3 cut(s) | 493, 852, 929 |
| TseFI | GTSAC | 2 cut(s) | 563, 677 |
| TseI | GCWGC | 4 cut(s) | 154, 297, 309, 1086 |
| Tsp45I | GTSAC | 2 cut(s) | 563, 677 |
| TspDTI | ATGAA | 3 cut(s) | 153, 338, 653 |
| TspGWI | ACGGA | 3 cut(s) | 240, 527, 799 |
| TspRI | CASTG | 3 cut(s) | 493, 852, 929 |
| VneI | GTGCAC | 1 cut(s) | 858 |
| VpaK11BI | GGWCC | 3 cut(s) | 169, 248, 698 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1031 |
| XmaJI | CCTAGG | 1 cut(s) | 602 |
| XspI | CTAG | 2 cut(s) | 63, 603 |