Rroxscaffold_7G00165360

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012409
Physical Location & Seq
Reverse (-)
7133763 .. 7135845
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165360.1

Sequence Viewer

Length: 1191 bp
ATGGCTCTTCTCACTTTCCCACCAGAGGCCACAGAGCCCAAGAAGAAGAAGAAACAAGTCCAACCACAACCACCACCACCACCACCATCAAAACGCAGCCACCAAAAGCACTCCTCAAAAAAGCAGCAGCCACCTCCACAAAAGCCACCCTCCTCCTCATGGGACCATTTCAAGAATCTCCTCACCTGCAAGCAGATCGAGGGGTCGAGAGTCCACGACCCGTCCAAAAATGCAATCGGCTACTCCAAGGTCGGGTCCTCTTGCGGCTCCATATGCAGCTTCAGAGACGTTGTTCACGGCAACACTACTAGCCGGGTTGTTCACAGAGCCGATAACTCGCCGGACAGTAGCTCGCTGGGTCAAGAAACCGGGTTGCTCAGTCGGAAAGTTACAATCCGGTCCGAGTCAGGGTCAGGTACTAGATCCAACCGCGGTGGCGGTGCTGCTTATACGTCATCTAATTCGTCTAGAGGGATGCAATTCAGAAAGCTCTCGGGGTGTTACGAGTGCCATTACATCGTTGACCCTAGCAGGTACCCAGTTCCAAGGTCTACTATCTGTGCTTGCCCTCAGTGCGGAGAGATCTTCCCCAAATTGGAGAGCTTGGAACTTCACCAATCAATTCGCCATGCTGTATCGGAGCTAGGCGTGGAAGATTCCGGCAGAAACATTGTGGAGATAATCTTCAAATCGAGCTGGCTGAAGAAGGACAGTCCCATTTGCAGAATCGAACGGATACTGAAGGTCCAGAACACGCAGCGGACCATCCAACGTTTCGAGGATTGCCGCGACGCAGTGAAAAACCGTGCCCTGAACAGCACTAGAAAGAATCCCAGGTGCGCCGCCGACGGCAACGAGTTGCTGCGGTTCCACTGCACCAGCATCTCGTGCACGCTCGGCGCGCGTGGCTCTACAAACCTCTGCGGCACCATCCCGGGCTGCGGGGTCTGCACGACCATCCGGCACGGCTTCCAAGGCGGTGGAGGATTAGAAGTTGGCAAGGAGGTCAAGCGCATTGCGGACGATGCGGCGGCTGAGGAGGAGGCTGCTGCCACCGCATCAGCTGGTGGGTCGTACGATTCCGTCGCCGGATACGCCGGAGTGTACTCGAATCTCGAGGAGTTGGTTGTGTTTAATCCGAGGGCGATCCTCCCGTGTTTCGTAGTTATTTACAAAGCTCTTGACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

42.98

Weight (kDa)

9.24

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75710
fragaria_vesca FvH4_2g38560
malus_domestica MD08G1013600.v1.1 MD15G1013200.v1.1
prunus_persica Prupe.1G366300_v2.0.a1
pyrus_communis pycom08g01220 pycom15g01140
rosa_chinensis RchiOBHm_Chr6g0302741
rosa_laevigata RLG00000011142
rosa_multiflora Rmu_sc0009897.1_g000007 Rmu_sc0017617.1_g000001 Rmu_ssc0000460.1_g000001
rosa_roxburghii Rroxscaffold_7G00165360
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430000 Rh6BG472500 Rh6CG442500 Rh6DG429200
rosa_wichuraiana Rw6G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 2 cut(s) 194, 522
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 534, 926
AccI GTMKAC 1 cut(s) 551
AccII CGCG 4 cut(s) 432, 789, 902, 904
AclI AACGTT 1 cut(s) 772
AclWI GGATC 2 cut(s) 417, 1141
AcuI CTGAAG 3 cut(s) 265, 722, 761
AfaI GTAC 4 cut(s) 418, 536, 1076, 1106
AfiI CCNNNNNNNGG 7 cut(s) 25, 159, 252, 408, 575, 595, 941
AgsI TTSAA 2 cut(s) 172, 688
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 8 cut(s) 279, 351, 490, 603, 643, 696, 1064, 1178
AluI AGCT 8 cut(s) 279, 351, 490, 603, 643, 696, 1064, 1178
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 889
AlwI GGATC 2 cut(s) 417, 1141
Ama87I CYCGRG 3 cut(s) 493, 934, 1115
AoxI GGCC 1 cut(s) 27
ApaLI GTGCAC 1 cut(s) 889
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 4 cut(s) 842, 902, 904, 1014
AspS9I GGNCC 5 cut(s) 163, 255, 399, 745, 762
AsuC2I CCSGG 4 cut(s) 314, 370, 935, 936
AsuHPI GGTGA 2 cut(s) 175, 605
AvaI CYCGRG 3 cut(s) 493, 934, 1115
AvaII GGWCC 5 cut(s) 163, 255, 399, 745, 762
BaeGI GKGCMC 2 cut(s) 811, 893
BanI GGYRCC 2 cut(s) 534, 926
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 886
Bbv12I GWGCWC 1 cut(s) 893
BbvCI CCTCAGC 1 cut(s) 1035
BccI CCATC 4 cut(s) 94, 773, 938, 965
BceAI ACGGC 3 cut(s) 313, 865, 982
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 835
BciVI GTATCC 2 cut(s) 729, 1085
BcnI CCSGG 4 cut(s) 314, 370, 935, 936
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 6 cut(s) 309, 420, 468, 528, 644, 822
BfuAI ACCTGC 2 cut(s) 194, 522
BfuI GTATCC 2 cut(s) 729, 1085
BglII AGATCT 1 cut(s) 582
Bme1390I CCNGG 5 cut(s) 314, 370, 835, 935, 936
Bme18I GGWCC 5 cut(s) 163, 255, 399, 745, 762
BmeT110I CYCGRG 3 cut(s) 493, 934, 1115
BmgT120I GGNCC 5 cut(s) 163, 255, 399, 745, 762
BmiI GGNNCC 6 cut(s) 164, 256, 268, 536, 869, 928
BmrFI CCNGG 5 cut(s) 314, 370, 835, 935, 936
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 4 cut(s) 465, 891, 1015, 1067
BmuI ACTGGG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 1035
BpuMI CCSGG 4 cut(s) 314, 370, 935, 936
BsaJI CCNNGG 7 cut(s) 246, 430, 545, 833, 934, 973, 1139
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 7 cut(s) 25, 159, 252, 408, 575, 595, 941
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 1014
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 7 cut(s) 246, 430, 545, 833, 934, 973, 1139
BseGI GGATG 4 cut(s) 480, 765, 930, 957
BseLI CCNNNNNNNGG 7 cut(s) 25, 159, 252, 408, 575, 595, 941
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 3 cut(s) 391, 584, 1026
BseNI ACTGG 1 cut(s) 539
BsePI GCGCGC 1 cut(s) 900
BseRI GAGGAG 7 cut(s) 103, 142, 145, 170, 1052, 1055, 1133
BseSI GKGCMC 2 cut(s) 811, 893
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 2 cut(s) 859, 934
Bsh1236I CGCG 4 cut(s) 432, 789, 902, 904
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 2 cut(s) 534, 926
BsiHKAI GWGCWC 1 cut(s) 893
BsiHKCI CYCGRG 3 cut(s) 493, 934, 1115
BsiSI CCGG 9 cut(s) 313, 341, 369, 397, 660, 935, 961, 1089, 1098
BsiWI CGTACG 1 cut(s) 1074
BslFI GGGAC 2 cut(s) 176, 699
BslI CCNNNNNNNGG 7 cut(s) 25, 159, 252, 408, 575, 595, 941
BsmAI GTCTC 1 cut(s) 279
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 176, 699
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 3 cut(s) 493, 934, 1115
Bsp1286I GDGCHC 3 cut(s) 39, 811, 893
Bsp143I GATC 4 cut(s) 195, 422, 582, 1146
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 390, 583, 1027
BspFNI CGCG 4 cut(s) 432, 789, 902, 904
BspLI GGNNCC 6 cut(s) 164, 256, 268, 536, 869, 928
BspMI ACCTGC 2 cut(s) 194, 522
BspPI GGATC 2 cut(s) 417, 1141
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 534, 926
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 7 cut(s) 246, 430, 545, 833, 934, 973, 1139
BssHII GCGCGC 1 cut(s) 900
BssMI GATC 4 cut(s) 195, 422, 582, 1146
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 3 cut(s) 246, 545, 973
Bst2BI CACGAG 1 cut(s) 886
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 3 cut(s) 347, 713, 806
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 888
BstC8I GCNNGC 6 cut(s) 191, 353, 565, 698, 893, 902
BstDEI CTNAG 3 cut(s) 377, 570, 1035
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 480, 765, 930, 957
BstFNI CGCG 4 cut(s) 432, 789, 902, 904
BstHHI GCGC 4 cut(s) 842, 902, 904, 1014
BstKTI GATC 4 cut(s) 198, 425, 585, 1149
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 4 cut(s) 195, 422, 582, 1146
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 5 cut(s) 312, 368, 833, 933, 934
BstSLI GKGCMC 2 cut(s) 811, 893
BstUI CGCG 4 cut(s) 432, 789, 902, 904
BstX2I RGATCY 2 cut(s) 422, 582
BstXI CCANNNNNNTGG 1 cut(s) 980
BstYI RGATCY 2 cut(s) 422, 582
BsuI GTATCC 2 cut(s) 729, 1085
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 480, 765, 930, 957
BtsI GCAGTG 2 cut(s) 801, 871
BtsIMutI CAGTG 3 cut(s) 578, 801, 871
BveI ACCTGC 2 cut(s) 194, 522
Cac8I GCNNGC 6 cut(s) 191, 353, 565, 698, 893, 902
CfoI GCGC 4 cut(s) 842, 902, 904, 1014
Cfr13I GGNCC 5 cut(s) 163, 255, 399, 745, 762
Cfr42I CCGCGG 1 cut(s) 433
Cfr9I CCCGGG 1 cut(s) 934
CpoI CGGWCCG 1 cut(s) 399
CseI GACGC 1 cut(s) 800
Csp6I GTAC 4 cut(s) 417, 535, 1075, 1105
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CspI CGGWCCG 1 cut(s) 399
CviAII CATG 2 cut(s) 159, 629
CviQI GTAC 4 cut(s) 417, 535, 1075, 1105
DdeI CTNAG 3 cut(s) 377, 570, 1035
DpnI GATC 4 cut(s) 197, 424, 584, 1148
DpnII GATC 4 cut(s) 195, 422, 582, 1146
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 3 cut(s) 246, 545, 973
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 5 cut(s) 163, 255, 399, 745, 762
Eco57I CTGAAG 3 cut(s) 265, 722, 761
Eco88I CYCGRG 3 cut(s) 493, 934, 1115
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 3 cut(s) 246, 545, 973
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 246, 545, 973
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 2 cut(s) 162, 632
FaiI YATR 5 cut(s) 160, 272, 274, 450, 630
FaqI GGGAC 2 cut(s) 176, 699
FatI CATG 2 cut(s) 158, 628
FauI CCCGC 1 cut(s) 935
FauNDI CATATG 1 cut(s) 272
FblI GTMKAC 1 cut(s) 551
FokI GGATG 4 cut(s) 487, 752, 917, 944
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 6 cut(s) 309, 420, 468, 528, 644, 822
GlaI GCGC 4 cut(s) 841, 901, 903, 1013
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 29
HapII CCGG 9 cut(s) 313, 341, 369, 397, 660, 935, 961, 1089, 1098
HgaI GACGC 1 cut(s) 800
HhaI GCGC 4 cut(s) 842, 902, 904, 1014
Hin1II CATG 2 cut(s) 162, 632
Hin6I GCGC 4 cut(s) 840, 900, 902, 1012
HinP1I GCGC 4 cut(s) 840, 900, 902, 1012
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 9 cut(s) 175, 210, 404, 656, 726, 829, 1079, 1111, 1184
HpaII CCGG 9 cut(s) 313, 341, 369, 397, 660, 935, 961, 1089, 1098
HphI GGTGA 2 cut(s) 175, 605
Hpy166II GTNNAC 7 cut(s) 214, 295, 322, 523, 552, 891, 1105
Hpy188I TCNGA 6 cut(s) 284, 384, 403, 485, 640, 1140
Hpy188III TCNNGA 7 cut(s) 172, 207, 362, 468, 748, 1115, 1181
Hpy8I GTNNAC 7 cut(s) 214, 295, 322, 523, 552, 891, 1105
Hpy99I CGWCG 3 cut(s) 794, 851, 1088
HpyAV CCTTC 2 cut(s) 700, 736
HpyCH4III ACNGT 3 cut(s) 347, 713, 806
HpyCH4IV ACGT 3 cut(s) 288, 452, 772
HpyCH4V TGCA 8 cut(s) 189, 233, 276, 478, 723, 876, 891, 951
HpyF3I CTNAG 3 cut(s) 377, 570, 1035
HpySE526I ACGT 3 cut(s) 288, 452, 772
Hsp92II CATG 2 cut(s) 162, 632
HspAI GCGC 4 cut(s) 840, 900, 902, 1012
KpnI GGTACC 1 cut(s) 538
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 4 cut(s) 195, 422, 582, 1146
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 272, 640
LweI GCATC 4 cut(s) 465, 891, 1015, 1067
MaeI CTAG 6 cut(s) 309, 420, 468, 528, 644, 822
MaeII ACGT 3 cut(s) 288, 452, 772
MaeIII GTNAC 2 cut(s) 388, 500
MalI GATC 4 cut(s) 197, 424, 584, 1148
MboI GATC 4 cut(s) 195, 422, 582, 1146
MboII GAAGA 7 cut(s) 55, 58, 61, 577, 665, 676, 715
MflI RGATCY 2 cut(s) 422, 582
MhlI GDGCHC 3 cut(s) 39, 811, 893
MluCI AATT 4 cut(s) 460, 479, 593, 621
MlyI GAGTC 3 cut(s) 219, 413, 1178
MmeI TCCRAC 4 cut(s) 85, 362, 450, 793
MseI TTAA 2 cut(s) 1134, 1189
MspA1I CMGCKG 3 cut(s) 432, 760, 1064
MspI CCGG 9 cut(s) 313, 341, 369, 397, 660, 935, 961, 1089, 1098
MspR9I CCNGG 5 cut(s) 314, 370, 835, 935, 936
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 4 cut(s) 432, 789, 902, 904
NciI CCSGG 4 cut(s) 314, 370, 935, 936
NdeI CATATG 1 cut(s) 272
NdeII GATC 4 cut(s) 195, 422, 582, 1146
NlaIII CATG 2 cut(s) 162, 632
NlaIV GGNNCC 6 cut(s) 164, 256, 268, 536, 869, 928
NmeAIII GCCGAG 1 cut(s) 876
PaeR7I CTCGAG 1 cut(s) 1115
PaqCI CACCTGC 1 cut(s) 194
PauI GCGCGC 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 6 cut(s) 175, 656, 726, 829, 1079, 1111
Pfl23II CGTACG 1 cut(s) 1074
PleI GAGTC 3 cut(s) 218, 412, 1178
PpsI GAGTC 3 cut(s) 218, 412, 1178
PpuMI RGGWCCY 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 833
PspLI CGTACG 1 cut(s) 1074
PspN4I GGNNCC 6 cut(s) 164, 256, 268, 536, 869, 928
PspPI GGNCC 5 cut(s) 163, 255, 399, 745, 762
PspPPI RGGWCCY 1 cut(s) 255
PsuI RGATCY 2 cut(s) 422, 582
PteI GCGCGC 1 cut(s) 900
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 4 cut(s) 418, 536, 1076, 1106
RsaNI GTAC 4 cut(s) 417, 535, 1075, 1105
Rsr2I CGGWCCG 1 cut(s) 399
RsrII CGGWCCG 1 cut(s) 399
SacII CCGCGG 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 1134, 1189
Sau3AI GATC 4 cut(s) 195, 422, 582, 1146
Sau96I GGNCC 5 cut(s) 163, 255, 399, 745, 762
SchI GAGTC 3 cut(s) 219, 413, 1178
ScrFI CCNGG 5 cut(s) 314, 370, 835, 935, 936
SduI GDGCHC 3 cut(s) 39, 811, 893
SfaNI GCATC 4 cut(s) 465, 891, 1015, 1067
Sfr274I CTCGAG 1 cut(s) 1115
Sfr303I CCGCGG 1 cut(s) 433
SgrBI CCGCGG 1 cut(s) 433
SinI GGWCC 5 cut(s) 163, 255, 399, 745, 762
SlaI CTCGAG 1 cut(s) 1115
SmaI CCCGGG 1 cut(s) 936
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
Sse9I AATT 4 cut(s) 460, 479, 593, 621
SspMI CTAG 6 cut(s) 309, 420, 468, 528, 644, 822
StyD4I CCNGG 5 cut(s) 312, 368, 833, 933, 934
StyI CCWWGG 3 cut(s) 246, 545, 973
TaaI ACNGT 3 cut(s) 347, 713, 806
TaiI ACGT 3 cut(s) 291, 455, 775
TaqI TCGA 7 cut(s) 198, 206, 692, 729, 777, 1109, 1116
TasI AATT 4 cut(s) 460, 479, 593, 621
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 6 cut(s) 267, 789, 845, 927, 1031, 1034
TfiI GAWTC 6 cut(s) 175, 656, 726, 829, 1079, 1111
Tru1I TTAA 2 cut(s) 1134, 1189
Tru9I TTAA 2 cut(s) 1134, 1189
TscAI CASTG 3 cut(s) 578, 801, 878
TspGWI ACGGA 2 cut(s) 748, 1072
TspMI CCCGGG 1 cut(s) 934
TspRI CASTG 3 cut(s) 578, 801, 878
VneI GTGCAC 1 cut(s) 889
VpaK11BI GGWCC 5 cut(s) 163, 255, 399, 745, 762
XbaI TCTAGA 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 1115
XmaI CCCGGG 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 551
XspI CTAG 6 cut(s) 309, 420, 468, 528, 644, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.