Rmu_sc0017617.1_g000001

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017617.1
OG0012409
Physical Location & Seq
Reverse (-)
1 .. 588
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017617.1_g000001.1.cds

Sequence Viewer

Length: 280 bp
ctgggtcaggaaaccgggttgctcagtcggaaagttacaatccggtccgagtcagggtcaggtactagaaccaaccgcggtggcggtgctgcttatacgtcatctaattcgtctagagggatgcaattcagaaagctttccgggtgttacgagtgccattacatcgttgaccctagcaggtacccagttccaaggtctactatctgtgcttgccctcagtgcggagagatcttccccaaattggagagcttggaacttcaccaatcaattcgccatgctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.18

Weight (kDa)

9.2

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75710
fragaria_vesca FvH4_2g38560
malus_domestica MD08G1013600.v1.1 MD15G1013200.v1.1
prunus_persica Prupe.1G366300_v2.0.a1
pyrus_communis pycom08g01220 pycom15g01140
rosa_chinensis RchiOBHm_Chr6g0302741
rosa_laevigata RLG00000011142
rosa_multiflora Rmu_sc0009897.1_g000007 Rmu_sc0017617.1_g000001 Rmu_ssc0000460.1_g000001
rosa_roxburghii Rroxscaffold_7G00165360
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430000 Rh6BG472500 Rh6CG442500 Rh6DG429200
rosa_wichuraiana Rw6G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 197
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 76, 78, 84, 222
AfaI GTAC 2 cut(s) 64, 182
AfiI CCNNNNNNNGG 3 cut(s) 54, 221, 241
AluBI AGCT 2 cut(s) 136, 249
AluI AGCT 2 cut(s) 136, 249
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 136
Asp718I GGTACC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 2 cut(s) 16, 142
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 76
BcnI CCSGG 2 cut(s) 16, 142
BfaI CTAG 3 cut(s) 66, 114, 174
BfuAI ACCTGC 1 cut(s) 168
BglII AGATCT 1 cut(s) 228
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 16, 142
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 16, 142
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 179
BpuMI CCSGG 2 cut(s) 16, 142
BsaJI CCNNGG 2 cut(s) 76, 191
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 221, 241
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 76, 191
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 54, 221, 241
BseMII CTCAG 2 cut(s) 37, 230
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 15, 43, 141
BslI CCNNNNNNNGG 3 cut(s) 54, 221, 241
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 4 cut(s) 76, 78, 84, 222
BspCNI CTCAG 2 cut(s) 36, 229
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 76, 191
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 23, 216
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 14, 140
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 224
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 45
Cfr42I CCGCGG 1 cut(s) 79
CpoI CGGWCCG 1 cut(s) 45
Csp6I GTAC 2 cut(s) 63, 181
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CspI CGGWCCG 1 cut(s) 45
CviAII CATG 1 cut(s) 275
CviJI RGCY 2 cut(s) 136, 249
CviKI_1 RGCY 2 cut(s) 136, 249
CviQI GTAC 2 cut(s) 63, 181
DdeI CTNAG 2 cut(s) 23, 216
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 278
FaiI YATR 2 cut(s) 96, 276
FatI CATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 3 cut(s) 66, 114, 174
GluI GCNGC 1 cut(s) 90
HapII CCGG 3 cut(s) 15, 43, 141
Hin1II CATG 1 cut(s) 278
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 1 cut(s) 50
HpaII CCGG 3 cut(s) 15, 43, 141
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 169, 198
Hpy188I TCNGA 3 cut(s) 30, 49, 131
Hpy188III TCNNGA 2 cut(s) 8, 114
Hpy8I GTNNAC 2 cut(s) 169, 198
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 2 cut(s) 23, 216
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 278
KpnI GGTACC 1 cut(s) 184
KspI CCGCGG 1 cut(s) 79
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 7 cut(s) 28, 39, 45, 56, 154, 163, 198
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 111
MaeI CTAG 3 cut(s) 66, 114, 174
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 34, 146
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 223
MflI RGATCY 1 cut(s) 228
MluCI AATT 4 cut(s) 106, 125, 239, 267
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 2 cut(s) 110, 225
MroXI GAANNNNTTC 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 3 cut(s) 15, 43, 141
MspR9I CCNGG 2 cut(s) 16, 142
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 219
NciI CCSGG 2 cut(s) 16, 142
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 2 cut(s) 64, 182
RsaNI GTAC 2 cut(s) 63, 181
Rsr2I CGGWCCG 1 cut(s) 45
RsrII CGGWCCG 1 cut(s) 45
SacII CCGCGG 1 cut(s) 79
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 16, 142
SetI ASST 6 cut(s) 64, 101, 138, 182, 197, 251
SfaNI GCATC 1 cut(s) 111
Sfr303I CCGCGG 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 79
SinI GGWCC 1 cut(s) 45
Sse9I AATT 4 cut(s) 106, 125, 239, 267
SsiI CCGC 4 cut(s) 76, 78, 84, 222
SspMI CTAG 3 cut(s) 66, 114, 174
StyD4I CCNGG 2 cut(s) 14, 140
StyI CCWWGG 1 cut(s) 191
TaiI ACGT 1 cut(s) 101
TasI AATT 4 cut(s) 106, 125, 239, 267
TscAI CASTG 1 cut(s) 224
TseI GCWGC 1 cut(s) 89
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 45
XbaI TCTAGA 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 3 cut(s) 66, 114, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.