Prupe.1G366300_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012409
Physical Location & Seq
Reverse (-)
33574701 .. 33576529
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G366300.1

Sequence Viewer

Length: 813 bp
ATGCAATTCAGGAAGCTCTCTGGCTGTTATGAGTGCCACATGATCGTTGACCCTAGCAGGTACCCAATTCCGAGGTCTAGTGTTTGTGTTTGCTCTCAGTGCGGAGAGATCTTCCCCAAGATGGATAGTTTGGAACATCACCAAGCAATTCGCCATGCTGTATCGGAGCTGGGAGTTGAAGATTCCGGCCGAAACATTGTGGAGATAATATTCAAATCAAGCTGGCAGAAGAAAGACATTCCCATCTGCAAGATCGAACGGATACTAAAGGTTCACAACACTCAGCGCACCATCCAACGGTTCGAGGACTGCCGGGATGCCGTGAAGAACCGTGCGCTGGGCACCACACGAAAGAACCCCAGGTGCGCAGCGGACGGGAACGAGCTGTTGCGGTTCCACTGCGCCAGCATCTCGTGCACGCTCGGCGCACGTGGCTCATCCAGCTTGTGCGGCTCCGTACCTGGCTGCGGAGTGTGCACGATCATCAGGCATGGCTTCCAAGGCAAAGCAGGAGGGGAAGGGGGCAAGGGAGTGCGGACCACTGCCAGCAGCGGTAGGGCCCACGACTCCTTGAGCTGTATGGACGGGCGTAGGGCCATGTTGGTGTGCCGTGTCATTGCTGGCAGGGTTAGGCGCATTGCGGACGATGCGCCGACGGAGGAGGATGCGTTGTCGTCCTTGTCGGCTCCTGGCTCCTACGATTCTGTAGCCGGATTCGTCGGAATATATTCAAATCTCGAGGAGCTGGTGGTTTATAATCCGAGGGCCATCCTCCCATGCTTCGTAGTCATTTACAAGGCTCTAGAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.47

Weight (kDa)

8.78

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75710
fragaria_vesca FvH4_2g38560
malus_domestica MD08G1013600.v1.1 MD15G1013200.v1.1
prunus_persica Prupe.1G366300_v2.0.a1
pyrus_communis pycom08g01220 pycom15g01140
rosa_chinensis RchiOBHm_Chr6g0302741
rosa_laevigata RLG00000011142
rosa_multiflora Rmu_sc0009897.1_g000007 Rmu_sc0017617.1_g000001 Rmu_ssc0000460.1_g000001
rosa_roxburghii Rroxscaffold_7G00165360
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430000 Rh6BG472500 Rh6CG442500 Rh6DG429200
rosa_wichuraiana Rw6G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
Acc16I TGCGCA 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 2 cut(s) 60, 341
AciI CCGC 8 cut(s) 102, 371, 391, 450, 468, 535, 552, 641
AcoI YGGCCR 1 cut(s) 187
AcvI CACGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 62, 459
AfiI CCNNNNNNNGG 4 cut(s) 121, 297, 337, 467
AgsI TTSAA 3 cut(s) 179, 214, 732
AjnI CCWGG 3 cut(s) 359, 460, 688
AluBI AGCT 7 cut(s) 16, 169, 222, 385, 444, 576, 745
AluI AGCT 7 cut(s) 16, 169, 222, 385, 444, 576, 745
Alw21I GWGCWC 2 cut(s) 419, 479
Alw44I GTGCAC 2 cut(s) 415, 475
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 4 cut(s) 187, 558, 594, 765
ApaI GGGCCC 1 cut(s) 562
ApaLI GTGCAC 2 cut(s) 415, 475
ApeKI GCWGC 3 cut(s) 368, 465, 549
Asp700I GAANNNNTTC 1 cut(s) 727
Asp718I GGTACC 1 cut(s) 60
AspLEI GCGC 7 cut(s) 288, 337, 368, 404, 428, 636, 652
AspS9I GGNCC 5 cut(s) 537, 558, 559, 594, 765
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 1 cut(s) 537
BaeGI GKGCMC 4 cut(s) 344, 419, 479, 562
BanI GGYRCC 2 cut(s) 60, 341
BanII GRGCYC 1 cut(s) 562
BauI CACGAG 1 cut(s) 412
BbrPI CACGTG 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 419, 479
BbvI GCAGC 3 cut(s) 380, 452, 561
BccI CCATC 4 cut(s) 115, 251, 299, 776
BceAI ACGGC 2 cut(s) 305, 594
BciT130I CCWGG 3 cut(s) 361, 462, 690
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 314
BfaI CTAG 3 cut(s) 54, 78, 803
BfmI CTRYAG 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 48
BfuI GTATCC 1 cut(s) 255
BglII AGATCT 1 cut(s) 108
BisI GCNGC 4 cut(s) 369, 451, 466, 550
BlsI GCNGC 4 cut(s) 370, 452, 467, 551
Bme1390I CCNGG 4 cut(s) 314, 361, 462, 690
Bme18I GGWCC 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 5 cut(s) 537, 558, 559, 594, 765
BmiI GGNNCC 7 cut(s) 62, 343, 395, 454, 560, 687, 694
BmrFI CCNGG 4 cut(s) 314, 361, 462, 690
BmsI GCATC 4 cut(s) 307, 417, 637, 655
BpuEI CTTGAG 1 cut(s) 592
BpuMI CCSGG 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 71, 359, 499, 761
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 297, 337, 467
Bse3DI GCAATG 2 cut(s) 615, 636
BseBI CCWGG 3 cut(s) 361, 462, 690
BseDI CCNNGG 4 cut(s) 71, 359, 499, 761
BseGI GGATG 5 cut(s) 291, 322, 437, 670, 768
BseLI CCNNNNNNNGG 4 cut(s) 121, 297, 337, 467
BseMI GCAATG 2 cut(s) 615, 636
BseMII CTCAG 2 cut(s) 110, 296
BseRI GAGGAG 2 cut(s) 674, 755
BseSI GKGCMC 4 cut(s) 344, 419, 479, 562
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 3 cut(s) 380, 452, 561
BseYI CCCAGC 2 cut(s) 169, 337
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 4 cut(s) 189, 560, 596, 767
BshNI GGYRCC 2 cut(s) 60, 341
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 419, 479
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 3 cut(s) 186, 313, 711
BslI CCNNNNNNNGG 4 cut(s) 121, 297, 337, 467
BsnI GGCC 4 cut(s) 189, 560, 596, 767
BsoBI CYCGRG 1 cut(s) 737
Bsp120I GGGCCC 1 cut(s) 558
Bsp1286I GDGCHC 4 cut(s) 344, 419, 479, 562
Bsp143I GATC 4 cut(s) 42, 108, 252, 480
BspACI CCGC 8 cut(s) 102, 371, 391, 450, 468, 535, 552, 641
BspANI GGCC 4 cut(s) 189, 560, 596, 767
BspCNI CTCAG 2 cut(s) 109, 295
BspLI GGNNCC 7 cut(s) 62, 343, 395, 454, 560, 687, 694
BspMI ACCTGC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 60, 341
BsrDI GCAATG 2 cut(s) 615, 636
BssECI CCNNGG 4 cut(s) 71, 359, 499, 761
BssMI GATC 4 cut(s) 42, 108, 252, 480
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 499
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 3 cut(s) 361, 462, 690
Bst4CI ACNGT 2 cut(s) 300, 332
BstAPI GCANNNNNTGC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 5 cut(s) 224, 406, 419, 547, 622
BstDEI CTNAG 2 cut(s) 96, 282
BstF5I GGATG 5 cut(s) 291, 322, 437, 670, 768
BstHHI GCGC 7 cut(s) 288, 337, 368, 404, 428, 636, 652
BstKTI GATC 4 cut(s) 45, 111, 255, 483
BstMBI GATC 4 cut(s) 42, 108, 252, 480
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 9 cut(s) 99, 414, 423, 432, 441, 450, 474, 501, 647
BstNI CCWGG 3 cut(s) 361, 462, 690
BstSCI CCNGG 4 cut(s) 312, 359, 460, 688
BstSFI CTRYAG 1 cut(s) 705
BstSLI GKGCMC 4 cut(s) 344, 419, 479, 562
BstV1I GCAGC 3 cut(s) 380, 452, 561
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BstZI CGGCCG 1 cut(s) 187
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 4 cut(s) 189, 560, 596, 767
BtsCI GGATG 5 cut(s) 291, 322, 437, 670, 768
BtsI GCAGTG 2 cut(s) 397, 540
BtsIMutI CAGTG 3 cut(s) 104, 397, 540
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 5 cut(s) 224, 406, 419, 547, 622
CfoI GCGC 7 cut(s) 288, 337, 368, 404, 428, 636, 652
Cfr13I GGNCC 5 cut(s) 537, 558, 559, 594, 765
Csp6I GTAC 2 cut(s) 61, 458
CviAII CATG 5 cut(s) 40, 155, 491, 598, 777
CviQI GTAC 2 cut(s) 61, 458
DdeI CTNAG 2 cut(s) 96, 282
DpnI GATC 4 cut(s) 44, 110, 254, 482
DpnII GATC 4 cut(s) 42, 108, 252, 480
EaeI YGGCCR 1 cut(s) 187
EagI CGGCCG 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 537
Eco52I CGGCCG 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 558
EcoRII CCWGG 3 cut(s) 359, 460, 688
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 5 cut(s) 43, 158, 494, 601, 780
FaiI YATR 9 cut(s) 30, 41, 156, 492, 581, 599, 727, 756, 778
FatI CATG 5 cut(s) 39, 154, 490, 597, 776
Fnu4HI GCNGC 4 cut(s) 369, 451, 466, 550
FokI GGATG 5 cut(s) 278, 329, 424, 677, 755
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 369, 451, 466, 550
FspBI CTAG 3 cut(s) 54, 78, 803
FspI TGCGCA 1 cut(s) 367
GlaI GCGC 7 cut(s) 287, 336, 367, 403, 427, 635, 651
GluI GCNGC 4 cut(s) 369, 451, 466, 550
GsaI CCCAGC 2 cut(s) 173, 341
HaeIII GGCC 4 cut(s) 189, 560, 596, 767
HapII CCGG 3 cut(s) 186, 313, 711
HhaI GCGC 7 cut(s) 288, 337, 368, 404, 428, 636, 652
Hin1II CATG 5 cut(s) 43, 158, 494, 601, 780
Hin6I GCGC 7 cut(s) 286, 335, 366, 402, 426, 634, 650
HinP1I GCGC 7 cut(s) 286, 335, 366, 402, 426, 634, 650
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 5 cut(s) 182, 566, 701, 714, 806
HpaII CCGG 3 cut(s) 186, 313, 711
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 4 cut(s) 49, 274, 417, 477
Hpy188I TCNGA 4 cut(s) 72, 166, 722, 762
Hpy188III TCNNGA 4 cut(s) 10, 737, 803, 810
Hpy8I GTNNAC 4 cut(s) 49, 274, 417, 477
Hpy99I CGWCG 2 cut(s) 658, 722
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 2 cut(s) 300, 332
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 4 cut(s) 4, 249, 417, 477
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 414, 423, 432, 441, 450, 474, 501, 647
HpyF3I CTNAG 2 cut(s) 96, 282
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 43, 158, 494, 601, 780
HspAI GCGC 7 cut(s) 286, 335, 366, 402, 426, 634, 650
KpnI GGTACC 1 cut(s) 64
Kzo9I GATC 4 cut(s) 42, 108, 252, 480
LmnI GCTCC 5 cut(s) 166, 458, 691, 698, 742
Lsp1109I GCAGC 3 cut(s) 380, 452, 561
LweI GCATC 4 cut(s) 307, 417, 637, 655
MaeI CTAG 3 cut(s) 54, 78, 803
MaeII ACGT 1 cut(s) 430
MalI GATC 4 cut(s) 44, 110, 254, 482
MboI GATC 4 cut(s) 42, 108, 252, 480
MboII GAAGA 4 cut(s) 103, 191, 241, 337
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 4 cut(s) 344, 419, 479, 562
MluCI AATT 3 cut(s) 5, 66, 147
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 319, 700
MnlI CCTC 8 cut(s) 66, 298, 506, 652, 655, 733, 756, 782
MroXI GAANNNNTTC 1 cut(s) 727
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 371, 552
MspI CCGG 3 cut(s) 186, 313, 711
MspR9I CCNGG 4 cut(s) 314, 361, 462, 690
MvaI CCWGG 3 cut(s) 361, 462, 690
MwoI GCNNNNNNNGC 9 cut(s) 99, 414, 423, 432, 441, 450, 474, 501, 647
NciI CCSGG 1 cut(s) 314
NdeII GATC 4 cut(s) 42, 108, 252, 480
NlaIII CATG 5 cut(s) 43, 158, 494, 601, 780
NlaIV GGNNCC 7 cut(s) 62, 343, 395, 454, 560, 687, 694
NmeAIII GCCGAG 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 182, 701, 714
PkrI GCNGC 4 cut(s) 370, 452, 467, 551
PleI GAGTC 1 cut(s) 560
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 560
Ppu21I YACGTR 1 cut(s) 431
PsiI TTATAA 1 cut(s) 756
Psp6I CCWGG 3 cut(s) 359, 460, 688
PspCI CACGTG 1 cut(s) 431
PspFI CCCAGC 2 cut(s) 169, 337
PspGI CCWGG 3 cut(s) 359, 460, 688
PspN4I GGNNCC 7 cut(s) 62, 343, 395, 454, 560, 687, 694
PspOMI GGGCCC 1 cut(s) 558
PspPI GGNCC 5 cut(s) 537, 558, 559, 594, 765
PsuI RGATCY 1 cut(s) 108
RsaI GTAC 2 cut(s) 62, 459
RsaNI GTAC 2 cut(s) 61, 458
RseI CAYNNNNRTG 1 cut(s) 602
SatI GCNGC 4 cut(s) 369, 451, 466, 550
Sau3AI GATC 4 cut(s) 42, 108, 252, 480
Sau96I GGNCC 5 cut(s) 537, 558, 559, 594, 765
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 4 cut(s) 314, 361, 462, 690
SduI GDGCHC 4 cut(s) 344, 419, 479, 562
SfaNI GCATC 4 cut(s) 307, 417, 637, 655
SfcI CTRYAG 1 cut(s) 705
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 571, 737
SmoI CTYRAG 2 cut(s) 571, 737
Sse9I AATT 3 cut(s) 5, 66, 147
SsiI CCGC 8 cut(s) 102, 371, 391, 450, 468, 535, 552, 641
SspI AATATT 1 cut(s) 210
SspMI CTAG 3 cut(s) 54, 78, 803
StyD4I CCNGG 4 cut(s) 312, 359, 460, 688
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 300, 332
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 255, 303, 738
TasI AATT 3 cut(s) 5, 66, 147
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 3 cut(s) 182, 701, 714
TscAI CASTG 3 cut(s) 104, 404, 547
TseI GCWGC 3 cut(s) 368, 465, 549
TspGWI ACGGA 3 cut(s) 274, 445, 671
TspRI CASTG 3 cut(s) 104, 404, 547
VneI GTGCAC 2 cut(s) 415, 475
VpaK11BI GGWCC 1 cut(s) 537
XbaI TCTAGA 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 3 cut(s) 54, 78, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.