Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Reverse (-)

28555034 .. 28557615

Gene Structure 2582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCATCGGACAACGAATCGACACCGTCTCAAGCGACGGTAGAAATGATGGCGACTTCGCCGGCGAAGATTAAAGAGTATCCAGAACCATTGGCTTTACATGAAGTTGTCGTCAAGGATTCTTCTGTCTTCTGGGATACTCTCAGGCGGTTTCACTCAATTATGTCCACTAAGTTCATGATTCCTGTGATTGGAGGAAAAGAACTAGATTTGCATGTTTTGTATGTGGAAGTCACGAGGAGGGGAGGTTACGAAAAGGTAGTCGTAGAGAAAAAATGGAGGGAAGTTGGAGGAGTGTTTAGATTCTCTGCGACAACAACAAGTGCTTCGTTTGTCTTAAGGAAACATTATCTCAATCTTCTCTTCCATTACGAACAAGTTCATCTCTTCACTGCTCGTGGTCCTCTTCTTCATCCCATAGCTACATTTCATGCAAATCCCTCAACGAGCAAAGAAATGGCGCTCGTCGAATATACTCCTCCGAGTATAAGATATCATAATACTCATCCTCCTTCTCAAGGTTCGTCGAGTTTCACAGCCATAGGTACAATAGAAGGCAAATTCGATTGTGGTTATCTGGTAAAAGTTAAGTTGGGCTCAGAGATTCTTAACGGCGTTCTTTATCATTCGGCCCAGCCCGGCCCATCATCATCTCCAACCGCTGTTCTAAACAATGCCGTTGTACCTTATGTTGAAACTGGGAGGAGACGGCGTCGTTTAGGTAAAAGACGAAGAAGCAGACGCAGAGAAGATCCGAATTACCCGAAACCGAACCGGAGCGGTTACAATTTCTTCTTTGCTGAGAAACATTGCAAGCTCAAATCACTTTATCCCAACAAGGAGAGAGAGTTTACGAAACTTATCGGAGAATCGTGGAGCAATCTCTCTACCGAAGAACGAATGGTTTATCAAGACATTGGATTGAAGGATAAGGAAAGGTATCAGAGGGAGTTGAATGAGTACAGAGAAACGTTGAGACTTAGGGATGGTGACATGACAAACGGCAAGGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

338

Amino Acids

38.77

Weight (kDa)

9.61

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	42 - 125	4.5e-22	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	252 - 321	2.8e-11	HMG-box domain
HMG_box	PF00505	255 - 322	2.5e-11	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	780
AciI	CCGC	3 cut(s)	148, 660, 780
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	712
AfaI	GTAC	3 cut(s)	547, 684, 962
AfiI	CCNNNNNNNGG	2 cut(s)	191, 518
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	695, 925, 955
AluBI	AGCT	2 cut(s)	422, 817
AluI	AGCT	2 cut(s)	422, 817
Alw26I	GTCTC	3 cut(s)	33, 700, 970
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	2 cut(s)	630, 640
ApoI	RAATTY	1 cut(s)	560
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	3 cut(s)	401, 631, 641
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	1001
AvaII	GGWCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	599
BauI	CACGAG	2 cut(s)	235, 396
BbsI	GAAGAC	1 cut(s)	121
BccI	CCATC	3 cut(s)	43, 652, 980
BceAI	ACGGC	3 cut(s)	628, 662, 725
BciVI	GTATCC	2 cut(s)	90, 130
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	3 cut(s)	33, 700, 970
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	337
BfuI	GTATCC	2 cut(s)	90, 130
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	401, 631, 641
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	2 cut(s)	15, 501
BpuMI	CCSGG	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	712
BsaWI	WCCGGW	1 cut(s)	774
BsaXI	ACNNNNNCTCC	8 cut(s)	232, 262, 493, 523, 697, 727, 833, 863
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 518
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	1 cut(s)	808
BseGI	GGATG	3 cut(s)	412, 505, 991
BseLI	CCNNNNNNNGG	2 cut(s)	191, 518
BseMI	GCAATG	1 cut(s)	808
BseMII	CTCAG	3 cut(s)	157, 612, 792
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	4 cut(s)	253, 306, 468, 718
BseYI	CCCAGC	1 cut(s)	633
BshFI	GGCC	2 cut(s)	632, 642
BsiSI	CCGG	3 cut(s)	62, 639, 775
BslI	CCNNNNNNNGG	2 cut(s)	191, 518
BsmAI	GTCTC	3 cut(s)	33, 700, 970
BsmBI	CGTCTC	2 cut(s)	33, 700
BsnI	GGCC	2 cut(s)	632, 642
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	751
BspACI	CCGC	3 cut(s)	148, 660, 780
BspANI	GGCC	2 cut(s)	632, 642
BspCNI	CTCAG	3 cut(s)	156, 611, 793
BspHI	TCATGA	1 cut(s)	177
BspPI	GGATC	1 cut(s)	746
BspTI	CTTAAG	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	780
BsrDI	GCAATG	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	703
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	1 cut(s)	751
BssNI	GRCGYC	1 cut(s)	712
BssSI	CACGAG	2 cut(s)	235, 396
Bst2BI	CACGAG	2 cut(s)	235, 396
Bst4CI	ACNGT	2 cut(s)	27, 40
Bst6I	CTCTTC	3 cut(s)	368, 392, 411
BstACI	GRCGYC	1 cut(s)	712
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	63, 815
BstDEI	CTNAG	5 cut(s)	143, 171, 598, 801, 980
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	412, 505, 991
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	754
BstMAI	GTCTC	3 cut(s)	33, 700, 970
BstMBI	GATC	1 cut(s)	751
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuI	GTATCC	2 cut(s)	90, 130
BsuRI	GGCC	2 cut(s)	632, 642
BtsCI	GGATG	3 cut(s)	412, 505, 991
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	63, 815
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	401, 631, 641
CseI	GACGC	2 cut(s)	701, 750
Csp6I	GTAC	3 cut(s)	546, 683, 961
CviAII	CATG	5 cut(s)	101, 178, 215, 431, 994
CviJI	RGCY	9 cut(s)	95, 422, 539, 597, 632, 637, 642, 817, 1010
CviKI_1	RGCY	9 cut(s)	95, 422, 539, 597, 632, 637, 642, 817, 1010
CviQI	GTAC	3 cut(s)	546, 683, 961
DdeI	CTNAG	5 cut(s)	143, 171, 598, 801, 980
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	368, 392, 411
EarI	CTCTTC	3 cut(s)	368, 392, 411
Eco24I	GRGCYC	1 cut(s)	599
Eco32I	GATATC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRV	GATATC	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	599
Esp3I	CGTCTC	2 cut(s)	33, 700
FaeI	CATG	5 cut(s)	104, 181, 218, 434, 997
FatI	CATG	5 cut(s)	100, 177, 214, 430, 993
FokI	GGATG	3 cut(s)	399, 492, 998
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	462
GsaI	CCCAGC	1 cut(s)	637
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	632, 642
HapII	CCGG	3 cut(s)	62, 639, 775
HgaI	GACGC	2 cut(s)	701, 750
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	104, 181, 218, 434, 997
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	6 cut(s)	17, 119, 181, 303, 604, 869
HpaII	CCGG	3 cut(s)	62, 639, 775
HphI	GGTGA	1 cut(s)	1001
Hpy166II	GTNNAC	2 cut(s)	168, 852
Hpy188I	TCNGA	6 cut(s)	10, 483, 601, 756, 866, 945
Hpy188III	TCNNGA	4 cut(s)	83, 178, 235, 911
Hpy8I	GTNNAC	2 cut(s)	168, 852
Hpy99I	CGWCG	4 cut(s)	40, 470, 529, 717
HpyAV	CCTTC	3 cut(s)	522, 548, 919
HpyCH4III	ACNGT	2 cut(s)	27, 40
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	3 cut(s)	214, 434, 813
HpyF3I	CTNAG	5 cut(s)	143, 171, 598, 801, 980
HpySE526I	ACGT	1 cut(s)	971
Hsp92I	GRCGYC	1 cut(s)	712
Hsp92II	CATG	5 cut(s)	104, 181, 218, 434, 997
HspAI	GCGC	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	751
LmnI	GCTCC	2 cut(s)	777, 876
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	4 cut(s)	232, 248, 782, 989
MalI	GATC	1 cut(s)	753
MbiI	CCGCTC	1 cut(s)	780
MboI	GATC	1 cut(s)	751
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	4 cut(s)	159, 560, 757, 787
MmeI	TCCRAC	2 cut(s)	268, 680
MreI	CGCCGGCG	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	72, 338, 588, 609
MspA1I	CMGCKG	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	3 cut(s)	62, 639, 775
MspR9I	CCNGG	1 cut(s)	639
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	1 cut(s)	751
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	5 cut(s)	104, 181, 218, 434, 997
NmuCI	GTSAC	2 cut(s)	232, 989
NspI	RCATGY	1 cut(s)	218
PagI	TCATGA	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	6 cut(s)	17, 119, 181, 303, 604, 869
PflFI	GACNNNGTC	2 cut(s)	25, 711
Psp1406I	AACGTT	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	633
PspPI	GGNCC	3 cut(s)	401, 631, 641
PsuI	RGATCY	1 cut(s)	751
PsyI	GACNNNGTC	2 cut(s)	25, 711
RsaI	GTAC	3 cut(s)	547, 684, 962
RsaNI	GTAC	3 cut(s)	546, 683, 961
SaqAI	TTAA	4 cut(s)	72, 338, 588, 609
Sau3AI	GATC	1 cut(s)	751
Sau96I	GGNCC	3 cut(s)	401, 631, 641
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	599
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	3 cut(s)	30, 337, 516
SmoI	CTYRAG	3 cut(s)	30, 337, 516
Sse9I	AATT	4 cut(s)	159, 560, 757, 787
SsiI	CCGC	3 cut(s)	148, 660, 780
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	27, 40
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	4 cut(s)	20, 468, 527, 564
TasI	AATT	4 cut(s)	159, 560, 757, 787
TatI	WGTACW	1 cut(s)	960
TfiI	GAWTC	6 cut(s)	17, 119, 181, 303, 604, 869
Tru1I	TTAA	4 cut(s)	72, 338, 588, 609
Tru9I	TTAA	4 cut(s)	72, 338, 588, 609
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	232, 989
Tsp45I	GTSAC	2 cut(s)	232, 989
TspDTI	ATGAA	5 cut(s)	117, 166, 371, 401, 419
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	2 cut(s)	25, 711
Vha464I	CTTAAG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.