Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

529254 .. 532476

Gene Structure 3223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1006400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGCCGGTGGTGAGGAGAGAGCAGGTTCTGCAGGGTGTGCATTATCCAGCACCACTTGCCACTCACGAGGAGGTTGTGAAGGACGCTGTTGTTTTCTGGGACACTCTCCGGCGCTTCCATTTCAAGATCAACACCACCAAGTTTATGGTTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTGTTATATTTAGAGGTAACAAGGAGGGGTGGCTTTGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGTAGGTGTTTTCATGTTCTCCCCAACAACAACAAGCGCTTCGTTTGTGTTGAGGAAACACTACTCAACCCTTCTTTACCATTACGAACAGGTTCACTTTTTTAGGACACAGGGTCCTTTATCTACCCCCACACCCTCACCCTCATCCTCAGAGAAACCAGGACCGGCGCTGGTGGAATATTCTCCCAAAGGTAAAGGTGCCAAAGGAACCAAACCCGTAAATGATTGTCCGGTTTCGGTCACTGATGAAGGTACTGGAACAATTGATGGGAAATTCAATTGCGGCTATCTTGTAACGGTGAAGTTGGGTTCGGAGATTCTCAGTGGAGTACTCTACCACTCTAACCAGCAGACTCTAGCCGGTCCTCCTAATCCAACTCCATCCCCCGAACCTGTCAATGCCATTGTACCCTACACGTCCACAAGATCTGGTCGTGTTGCAGGTTCGAGGAGGAGGAGATCAAGGAGGAGGACAGACCCCAACCACCCAAAACCCAACCGGAGCGGCTACAATTTCTTCTTTGCAGAAACGCATTTCAAGCTCAAGTCCCTTTACCCAAACAGAGAGAGGGAGTTTACCAAGATGATTGGCGAGTCTTGGAACAAACTCCCTGCAGAAGAGAGGCTGGTTTACCAGAATATTGGGCTGCAAGACAAAGCAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAAAGTTTGCGGCTCAAGATTCAGACAGGCCATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

330

Amino Acids

37.29

Weight (kDa)

9.85

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	33 - 115	3.3e-21	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	246 - 315	3.5e-09	HMG-box domain
HMG_box	PF00505	249 - 316	1.3e-09	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	16, 689
AccB1I	GGYRCC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	762
AciI	CCGC	3 cut(s)	540, 762, 958
AcsI	RAATTY	1 cut(s)	530
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	4 cut(s)	511, 588, 666, 944
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	2 cut(s)	186, 672
AgsI	TTSAA	4 cut(s)	127, 535, 796, 937
AhdI	GACNNNNNGTC	1 cut(s)	369
AjiI	CACGTC	1 cut(s)	675
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	2 cut(s)	175, 799
AluI	AGCT	2 cut(s)	175, 799
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	1 cut(s)	976
ApeKI	GCWGC	1 cut(s)	904
ApoI	RAATTY	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	117, 296, 427
AspS9I	GGNCC	3 cut(s)	371, 419, 620
AsuHPI	GGTGA	3 cut(s)	25, 387, 568
AvaII	GGWCC	3 cut(s)	371, 419, 620
BanI	GGYRCC	1 cut(s)	455
BauI	CACGAG	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	2 cut(s)	518, 646
BciT130I	CCWGG	1 cut(s)	417
BfaI	CTAG	2 cut(s)	176, 614
BfmI	CTRYAG	2 cut(s)	32, 870
BfoI	RGCGCY	3 cut(s)	118, 297, 428
BfuAI	ACCTGC	2 cut(s)	16, 689
BglII	AGATCT	1 cut(s)	683
BisI	GCNGC	4 cut(s)	541, 763, 905, 959
BlsI	GCNGC	4 cut(s)	542, 764, 906, 960
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	3 cut(s)	371, 419, 620
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	675
BmgT120I	GGNCC	3 cut(s)	371, 419, 620
BmiI	GGNNCC	4 cut(s)	153, 372, 457, 466
BmrFI	CCNGG	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	785, 947
BsaAI	YACGTR	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	979
BsaWI	WCCGGW	2 cut(s)	487, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	3 cut(s)	7, 421, 617
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	979
BseGI	GGATG	2 cut(s)	401, 638
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	420, 592
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	6 cut(s)	31, 86, 721, 724, 727, 739
BseXI	GCAGC	1 cut(s)	891
BshFI	GGCC	1 cut(s)	978
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	6 cut(s)	8, 112, 422, 488, 618, 757
BslFI	GGGAC	2 cut(s)	116, 790
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	116, 790
BsnI	GGCC	1 cut(s)	978
Bsp143I	GATC	3 cut(s)	129, 683, 716
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	3 cut(s)	540, 762, 958
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	2 cut(s)	419, 591
BspLI	GGNNCC	4 cut(s)	153, 372, 457, 466
BspMAI	CTGCAG	2 cut(s)	36, 874
BspMI	ACCTGC	2 cut(s)	16, 689
BspT107I	GGYRCC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	762
BsrFI	RCCGGY	3 cut(s)	7, 421, 617
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	3 cut(s)	7, 421, 617
BssECI	CCNNGG	1 cut(s)	979
BssMI	GATC	3 cut(s)	129, 683, 716
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	979
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	870
BstAPI	GCANNNNNTGC	3 cut(s)	31, 40, 59
BstBAI	YACGTR	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	406, 578
BstDSI	CCRYGG	1 cut(s)	979
BstF5I	GGATG	2 cut(s)	401, 638
BstH2I	RGCGCY	3 cut(s)	118, 297, 428
BstHHI	GCGC	3 cut(s)	117, 296, 427
BstKTI	GATC	3 cut(s)	132, 686, 719
BstMBI	GATC	3 cut(s)	129, 683, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 40, 59, 181, 796
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	2 cut(s)	32, 870
BstV1I	GCAGC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	683
BstXI	CCANNNNNNTGG	2 cut(s)	148, 899
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	979
BtrI	CACGTC	1 cut(s)	675
BtsCI	GGATG	2 cut(s)	401, 638
BtsIMutI	CAGTG	2 cut(s)	498, 586
BveI	ACCTGC	2 cut(s)	16, 689
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	117, 296, 427
Cfr10I	RCCGGY	3 cut(s)	7, 421, 617
Cfr13I	GGNCC	3 cut(s)	371, 419, 620
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	510, 587, 665, 943
CviAII	CATG	2 cut(s)	271, 980
CviQI	GTAC	4 cut(s)	510, 587, 665, 943
DdeI	CTNAG	2 cut(s)	406, 578
DpnI	GATC	3 cut(s)	131, 685, 718
DpnII	GATC	3 cut(s)	129, 683, 716
DriI	GACNNNNNGTC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	870
Eam1105I	GACNNNNNGTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	979
Eco47I	GGWCC	3 cut(s)	371, 419, 620
Eco47III	AGCGCT	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	979
ErhI	CCWWGG	1 cut(s)	979
FaeI	CATG	2 cut(s)	274, 983
FaiI	YATR	4 cut(s)	149, 193, 272, 981
FaqI	GGGAC	2 cut(s)	116, 790
FatI	CATG	2 cut(s)	270, 979
Fnu4HI	GCNGC	4 cut(s)	541, 763, 905, 959
FokI	GGATG	2 cut(s)	388, 625
Fsp4HI	GCNGC	4 cut(s)	541, 763, 905, 959
FspBI	CTAG	2 cut(s)	176, 614
GlaI	GCGC	3 cut(s)	116, 295, 426
GluI	GCNGC	4 cut(s)	541, 763, 905, 959
HaeII	RGCGCY	3 cut(s)	118, 297, 428
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	6 cut(s)	8, 112, 422, 488, 618, 757
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	117, 296, 427
Hin1II	CATG	2 cut(s)	274, 983
Hin6I	GCGC	3 cut(s)	115, 294, 425
HinP1I	GCGC	3 cut(s)	115, 294, 425
HinfI	GANTC	4 cut(s)	574, 610, 851, 967
HpaII	CCGG	6 cut(s)	8, 112, 422, 488, 618, 757
HphI	GGTGA	3 cut(s)	25, 387, 568
Hpy166II	GTNNAC	4 cut(s)	352, 678, 834, 889
Hpy188I	TCNGA	3 cut(s)	409, 571, 972
Hpy188III	TCNNGA	3 cut(s)	68, 127, 964
Hpy8I	GTNNAC	4 cut(s)	352, 678, 834, 889
HpyAV	CCTTC	5 cut(s)	76, 163, 220, 338, 500
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	2 cut(s)	186, 674
HpyCH4V	TGCA	8 cut(s)	34, 43, 184, 236, 698, 782, 872, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 40, 59, 181, 796
HpyF3I	CTNAG	2 cut(s)	406, 578
HpySE526I	ACGT	2 cut(s)	186, 674
Hsp92II	CATG	2 cut(s)	274, 983
HspAI	GCGC	3 cut(s)	115, 294, 425
Kzo9I	GATC	3 cut(s)	129, 683, 716
LmnI	GCTCC	2 cut(s)	172, 759
Lsp1109I	GCAGC	1 cut(s)	891
MaeI	CTAG	2 cut(s)	176, 614
MaeII	ACGT	2 cut(s)	186, 674
MaeIII	GTNAC	3 cut(s)	202, 496, 550
MalI	GATC	3 cut(s)	131, 685, 718
MbiI	CCGCTC	1 cut(s)	762
MboI	GATC	3 cut(s)	129, 683, 716
MboII	GAAGA	3 cut(s)	253, 766, 887
MfeI	CAATTG	2 cut(s)	519, 535
MflI	RGATCY	1 cut(s)	683
MluCI	AATT	4 cut(s)	519, 530, 535, 769
MlyI	GAGTC	2 cut(s)	604, 860
MmeI	TCCRAC	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	348
MspI	CCGG	6 cut(s)	8, 112, 422, 488, 618, 757
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	2 cut(s)	519, 535
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	31, 40, 59, 181, 796
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	3 cut(s)	129, 683, 716
NlaIII	CATG	2 cut(s)	274, 983
NlaIV	GGNNCC	4 cut(s)	153, 372, 457, 466
NmuCI	GTSAC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	574, 967
PkrI	GCNGC	4 cut(s)	542, 764, 906, 960
PleI	GAGTC	2 cut(s)	604, 859
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	2 cut(s)	604, 859
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	4 cut(s)	153, 372, 457, 466
PspPI	GGNCC	3 cut(s)	371, 419, 620
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	36, 874
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	4 cut(s)	511, 588, 666, 944
RsaNI	GTAC	4 cut(s)	510, 587, 665, 943
SatI	GCNGC	4 cut(s)	541, 763, 905, 959
Sau3AI	GATC	3 cut(s)	129, 683, 716
Sau96I	GGNCC	3 cut(s)	371, 419, 620
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	2 cut(s)	604, 860
ScrFI	CCNGG	1 cut(s)	417
SfcI	CTRYAG	2 cut(s)	32, 870
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	3 cut(s)	371, 419, 620
SmlI	CTYRAG	2 cut(s)	800, 962
SmoI	CTYRAG	2 cut(s)	800, 962
Sse9I	AATT	4 cut(s)	519, 530, 535, 769
SsiI	CCGC	3 cut(s)	540, 762, 958
SspI	AATATT	2 cut(s)	437, 898
SspMI	CTAG	2 cut(s)	176, 614
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	2 cut(s)	189, 677
TaqI	TCGA	1 cut(s)	704
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	4 cut(s)	519, 530, 535, 769
TatI	WGTACW	2 cut(s)	586, 942
TauI	GCSGC	3 cut(s)	543, 765, 961
TfiI	GAWTC	2 cut(s)	574, 967
TscAI	CASTG	2 cut(s)	505, 586
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	904
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	259, 519
TspRI	CASTG	2 cut(s)	505, 586
VpaK11BI	GGWCC	3 cut(s)	371, 419, 620
XapI	RAATTY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	176, 614
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.