Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

262192 .. 262703

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGTTTTTGTTTGGAGCATGTACTGGAACAATTGATGGGAAATTCGATTGCGGCTATCTCGTAACTGTGAAATTCGGTTCGGAGACTCTCAGTGGAGTACTCTACCACCCTAACCAGCATACTCTAGCCGGTTCTCCTAATCCAACTCCATCCCCCGAACCTGTCAATGCCATTGTACCCTACACCCCCCAAAGATCTGTTCGTGTTGCGGGTTCGAGGAGGAGGAGGAGATCAAGGAGGATGACAGATCCCAACTACCCAAAACCCAACCGGAGCGGCTACAATTTCTTCTTTGCTGAAACGCATTTCAAGCTCAAGTCCCTCTACCCAAACAGAGAGAGGGAATTTACCAAGATGATTGGCGAGTCTTGGAACAAACTCCCTGCGGAAGAGAGGCTGGTAACTACAATCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

140

Amino Acids

15.81

Weight (kDa)

10.07

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	4 cut(s)	54, 212, 279, 389
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	44, 74, 347
AfaI	GTAC	3 cut(s)	25, 102, 180
AgsI	TTSAA	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	245
ApoI	RAATTY	3 cut(s)	44, 74, 347
BccI	CCATC	2 cut(s)	32, 160
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	55, 280
BlsI	GCNGC	2 cut(s)	56, 281
BmcAI	AGTACT	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	152, 249
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	4 cut(s)	235, 238, 241, 244
BsiSI	CCGG	2 cut(s)	132, 274
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	197, 233, 250
BspACI	CCGC	4 cut(s)	54, 212, 279, 389
BspCNI	CTCAG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	3 cut(s)	197, 233, 250
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	152, 249
BstKTI	GATC	3 cut(s)	200, 236, 253
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	197, 233, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	197, 250
BstYI	RGATCY	2 cut(s)	197, 250
BtsCI	GGATG	2 cut(s)	152, 249
BtsIMutI	CAGTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	24, 101, 179
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	5 cut(s)	57, 131, 282, 316, 400
CviKI_1	RGCY	5 cut(s)	57, 131, 282, 316, 400
CviQI	GTAC	3 cut(s)	24, 101, 179
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	199, 235, 252
DpnII	GATC	3 cut(s)	197, 233, 250
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
FaeI	CATG	1 cut(s)	24
FaiI	YATR	2 cut(s)	22, 123
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	20
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	55, 280
FokI	GGATG	2 cut(s)	139, 256
Fsp4HI	GCNGC	2 cut(s)	55, 280
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	55, 280
HapII	CCGG	2 cut(s)	132, 274
Hin1II	CATG	1 cut(s)	24
HinfI	GANTC	2 cut(s)	88, 368
HpaII	CCGG	2 cut(s)	132, 274
Hpy188I	TCNGA	2 cut(s)	85, 416
HpyCH4III	ACNGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	197, 233, 250
LmnI	GCTCC	2 cut(s)	17, 276
LpnPI	CCDG	7 cut(s)	12, 131, 145, 177, 287, 386, 399
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	64, 403
MalI	GATC	3 cut(s)	199, 235, 252
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	197, 233, 250
MboII	GAAGA	2 cut(s)	283, 404
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	2 cut(s)	197, 250
MluCI	AATT	5 cut(s)	33, 44, 74, 286, 347
MlyI	GAGTC	2 cut(s)	82, 377
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	213, 216, 219, 222, 234, 335, 336, 390
MspI	CCGG	2 cut(s)	132, 274
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	3 cut(s)	197, 233, 250
NlaIII	CATG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	56, 281
PleI	GAGTC	2 cut(s)	82, 376
PpsI	GAGTC	2 cut(s)	82, 376
PsuI	RGATCY	2 cut(s)	197, 250
RsaI	GTAC	3 cut(s)	25, 102, 180
RsaNI	GTAC	3 cut(s)	24, 101, 179
SatI	GCNGC	2 cut(s)	55, 280
Sau3AI	GATC	3 cut(s)	197, 233, 250
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	2 cut(s)	82, 377
SetI	ASST	3 cut(s)	8, 166, 318
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	33, 44, 74, 286, 347
SsiI	CCGC	4 cut(s)	54, 212, 279, 389
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	48, 218
TasI	AATT	5 cut(s)	33, 44, 74, 286, 347
TatI	WGTACW	2 cut(s)	23, 100
TauI	GCSGC	2 cut(s)	57, 282
TscAI	CASTG	1 cut(s)	100
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	3 cut(s)	44, 74, 347
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.