Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

33149988 .. 33154087

Gene Structure 4100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G358300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCGCAGGTGGCCGGAAACAAGGGCTCCAATGGGTTGCAGGGTAGGCATTATCCTGCACCCCATGCTACCCATGAGGAAGTTATCAAAGACCCTGTTGTTTTCTGGGACACTCTCAGGCGCTTCCACTTGAAGATGAATACCAAGTTTATGATCCCTGTGATTGGAGGAAAGGAGCTAGATTTGCACATATTATATGTAGAGGTAACACGGAGGGGTGGCTTTGAGAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTGGGTGCCATTTTCATGTTCTCCCCAACAACAACAAGCGCTTCTTTTGTGTTGAGGAAACACTACTCAACTCTTCTCTACCATTATGAACAGGTTTACTTCTTTAAGACACAGGGTCCTTTATGTACCCCTACAGCTACTGCATTTTCCATTAGTAACCGTTCTGAGTCTGCAGACAAACCTGAGCTTGCTCTGGTGGAATATTCCCCCAAACACATAAAAGATCGTCCGCATGTCATTGAAGGTACGGGAATCATTGATGGGAAATTTGACTGTGGCTATTTCATAACTGTGAAATTGGGTTCGGAAGTTCTCAGCGGAGTTCTCTACCATCCTAATCAGCAGCCTTTACCTGGTCCTTCTAATCCAATTAGTCCAGCTCCCCAACCTGTTAATGCCATTGTACCATACACCAAAAGATCTTGTCGTCTTTTGGGTTCGAAGTCGAAGAGGAGGAGGAGAAGAAGGGGGGGAGATCCCAACTATCCAAAACCCAACAGGAGTGGCTATAATTTCTATTTTGCTGAAAAGCATTACAAGCTCAAGTCCCTCTACCCAAACAGAGAAAGGGAGTTTACCAAGATGATAGGCGAGTCTTGGAGCAATCTCACTGCAGAAGAGAGGCTGGTTTACCAGAATATTGGGTTGCAAGACAAAGAAAGATACAAGAAAGAGCTGAAAGAGTACAAGGAGAGTATGAAGCTCGGGAGTCAGGCAGTCGAGAGATTGATCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

333

Amino Acids

38.06

Weight (kDa)

9.71

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	2 cut(s)	488, 576
AclWI	GGATC	2 cut(s)	148, 728
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	4 cut(s)	385, 505, 663, 944
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	164, 611
AgsI	TTSAA	2 cut(s)	133, 500
AhdI	GACNNNNNGTC	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	7 cut(s)	178, 395, 445, 638, 799, 934, 961
AluI	AGCT	7 cut(s)	178, 395, 445, 638, 799, 934, 961
AlwI	GGATC	2 cut(s)	148, 728
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	962
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	123, 299
AspS9I	GGNCC	2 cut(s)	374, 614
AsuII	TTCGAA	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	2 cut(s)	374, 614
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	512, 597
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	987
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	3 cut(s)	390, 429, 870
BfoI	RGCGCY	2 cut(s)	124, 300
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	2 cut(s)	374, 614
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	2 cut(s)	374, 614
BmiI	GGNNCC	3 cut(s)	28, 265, 375
BmrFI	CCNGG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 611
BseBI	CCWGG	1 cut(s)	612
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	164, 611
BseMII	CTCAG	4 cut(s)	130, 414, 432, 586
BseRI	GAGGAG	3 cut(s)	724, 727, 730
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	122, 790
BslI	CCNNNNNNNGG	2 cut(s)	164, 611
BsmFI	GGGAC	2 cut(s)	122, 790
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	962
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	153, 481, 677, 733, 987
BspACI	CCGC	2 cut(s)	488, 576
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	4 cut(s)	129, 415, 433, 585
BspLI	GGNNCC	3 cut(s)	28, 265, 375
BspMAI	CTGCAG	2 cut(s)	433, 874
BspPI	GGATC	2 cut(s)	148, 728
BspT104I	TTCGAA	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	263
BssMI	GATC	5 cut(s)	153, 481, 677, 733, 987
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	419, 533, 550
Bst6I	CTCTTC	3 cut(s)	336, 701, 870
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	4 cut(s)	116, 423, 441, 572
BstF5I	GGATG	1 cut(s)	589
BstH2I	RGCGCY	2 cut(s)	124, 300
BstHHI	GCGC	2 cut(s)	123, 299
BstKTI	GATC	5 cut(s)	156, 484, 680, 736, 990
BstMBI	GATC	5 cut(s)	153, 481, 677, 733, 987
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 65, 184, 796
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	3 cut(s)	390, 429, 870
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	2 cut(s)	677, 733
BstXI	CCANNNNNNTGG	1 cut(s)	899
BstYI	RGATCY	2 cut(s)	677, 733
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	2 cut(s)	123, 299
Cfr13I	GGNCC	2 cut(s)	374, 614
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	4 cut(s)	384, 504, 662, 943
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	4 cut(s)	65, 74, 274, 491
CviQI	GTAC	4 cut(s)	384, 504, 662, 943
DdeI	CTNAG	4 cut(s)	116, 423, 441, 572
DpnI	GATC	5 cut(s)	155, 483, 679, 735, 989
DpnII	GATC	5 cut(s)	153, 481, 677, 733, 987
DriI	GACNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	3 cut(s)	336, 701, 870
Eam1105I	GACNNNNNGTC	1 cut(s)	372
EarI	CTCTTC	3 cut(s)	336, 701, 870
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	374, 614
Eco47III	AGCGCT	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	962
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	4 cut(s)	68, 77, 277, 494
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	122, 790
FatI	CATG	4 cut(s)	64, 73, 273, 490
FbaI	TGATCA	1 cut(s)	987
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	2 cut(s)	122, 298
GluI	GCNGC	1 cut(s)	602
HaeII	RGCGCY	2 cut(s)	124, 300
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	2 cut(s)	123, 299
Hin1II	CATG	4 cut(s)	68, 77, 277, 494
Hin6I	GCGC	2 cut(s)	121, 297
HinP1I	GCGC	2 cut(s)	121, 297
HinfI	GANTC	4 cut(s)	425, 510, 851, 967
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	3 cut(s)	355, 834, 889
Hpy188I	TCNGA	2 cut(s)	424, 565
Hpy188III	TCNNGA	2 cut(s)	964, 979
Hpy8I	GTNNAC	3 cut(s)	355, 834, 889
HpyAV	CCTTC	4 cut(s)	223, 494, 627, 717
HpyCH4III	ACNGT	3 cut(s)	419, 533, 550
HpyCH4V	TGCA	8 cut(s)	40, 59, 187, 239, 401, 431, 872, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 65, 184, 796
HpyF3I	CTNAG	4 cut(s)	116, 423, 441, 572
Hsp92II	CATG	4 cut(s)	68, 77, 277, 494
HspAI	GCGC	2 cut(s)	121, 297
Ksp22I	TGATCA	1 cut(s)	987
Kzo9I	GATC	5 cut(s)	153, 481, 677, 733, 987
LmnI	GCTCC	4 cut(s)	32, 175, 643, 858
Lsp1109I	GCAGC	1 cut(s)	613
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	205, 413
MalI	GATC	5 cut(s)	155, 483, 679, 735, 989
MboI	GATC	5 cut(s)	153, 481, 677, 733, 987
MboII	GAAGA	6 cut(s)	145, 256, 323, 718, 732, 887
MflI	RGATCY	2 cut(s)	677, 733
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	524, 554, 627, 769
MlyI	GAGTC	3 cut(s)	434, 860, 976
MseI	TTAA	2 cut(s)	363, 651
MslI	CAYNNNNRTG	2 cut(s)	272, 548
MspA1I	CMGCKG	1 cut(s)	576
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	46, 65, 184, 796
NdeII	GATC	5 cut(s)	153, 481, 677, 733, 987
NlaIII	CATG	4 cut(s)	68, 77, 277, 494
NlaIV	GGNNCC	3 cut(s)	28, 265, 375
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	3 cut(s)	433, 859, 975
PpsI	GAGTC	3 cut(s)	433, 859, 975
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	3 cut(s)	28, 265, 375
PspPI	GGNCC	2 cut(s)	374, 614
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	2 cut(s)	433, 874
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	677, 733
RsaI	GTAC	4 cut(s)	385, 505, 663, 944
RsaNI	GTAC	4 cut(s)	384, 504, 662, 943
RseI	CAYNNNNRTG	2 cut(s)	272, 548
SaqAI	TTAA	2 cut(s)	363, 651
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	5 cut(s)	153, 481, 677, 733, 987
Sau96I	GGNCC	2 cut(s)	374, 614
SchI	GAGTC	3 cut(s)	434, 860, 976
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	29
SexAI	ACCWGGT	1 cut(s)	610
SfcI	CTRYAG	3 cut(s)	390, 429, 870
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	2 cut(s)	374, 614
SmiMI	CAYNNNNRTG	2 cut(s)	272, 548
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	4 cut(s)	524, 554, 627, 769
SsiI	CCGC	2 cut(s)	488, 576
SspI	AATATT	2 cut(s)	461, 898
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	419, 533, 550
TaqI	TCGA	3 cut(s)	698, 704, 978
TasI	AATT	4 cut(s)	524, 554, 627, 769
TatI	WGTACW	1 cut(s)	942
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	2 cut(s)	363, 651
Tru9I	TTAA	2 cut(s)	363, 651
TscAI	CASTG	1 cut(s)	874
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	5 cut(s)	152, 262, 360, 532, 971
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	374, 614
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.