Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

333698 .. 336817

Gene Structure 3120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1005800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCGCGGGTGGCGGGGAGACGGAAGCCGTGGAATGGGGGGTCGCAACTGCAGGGTGTGCATTATCCAGCACCACTTGCCACTCATGGGGAGGTCGTGAAAAACGCTGTTGTTTTTTGGGACACTCTCCGGCGCTTCCATTTCATGATCAACACCACCAAGTTTATGGTTCCTGTGATCGGAGGGAAGGAGCTAGATTTGCACATATTATATGTGGAGGTAACAAGGAGGGGTGGCTTTGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGCGGTATTTTCATGTTCTCCCCCACAACAACGAGCGCTTCGTTTGTGCTGAGGAAACACTACTCAACCCTTCTTTACCATTACGAACAGGTTCACTTTTTTAGGACACAGGGTCCTTTATCTACCCCAACACCCTCAGAGAAACCAGAACTGGCGCTGGTGGAATATTCCCCCAAAGGCAAAGGGGCCAAAGGGGCCAAAGGGCGCAAACCCATAAATGGTTGTCCGCTTTTGGTCACTGATGAAGGTACTGGAACAATTGATGGGAAATTCGATTGCGGCTATCTCGTTACGGTGAAATTCGGTTCGGAGACTCTCAGTGGAGTACTCTACCACCCTAACCAGCAGACTCTAGCCGCTTCTCCTAATCCAACTCCATCCCCCGAACCTGTCAATGCCATTGTACCCTACACCCCCCAAAGATCTGTTCGTGTTGCGGGTTCGAGGAGGAGGAGGAGATCAAGGAGGAGGACAGATCCCAACTACCCAAAACCCAACCGGAGCGGCTACAATTTCTTCTTTGCTGAAACGCATTTCAAGCTCAAGTCCCTCTACCCAAACAGAGAGAGGGAGTTTACCAAGATGATTGGCGAGTCTTGGAACAAACTCCCTGCAGAAGAGAGGCTGGTTTACCAGAACATTGGGTTGCAAGACAAAGAAAGATACAAGAGAGAGTTAAAAGAGTACAAGGAAAATTTGCAGCTCAGGATTCAGGCTGGCCATGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

336

Amino Acids

38.17

Weight (kDa)

10.0

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	39 - 121	8.3e-21	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	252 - 321	1e-08	HMG-box domain
HMG_box	PF00505	255 - 322	1.6e-09	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	780
AccII	CGCG	1 cut(s)	7
AciI	CCGC	8 cut(s)	7, 14, 279, 503, 555, 633, 713, 780
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	994
AcsI	RAATTY	3 cut(s)	545, 575, 970
AfaI	GTAC	4 cut(s)	526, 603, 681, 962
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	4 cut(s)	35, 87, 179, 494
AgsI	TTSAA	1 cut(s)	814
AhdI	GACNNNNNGTC	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	3 cut(s)	193, 817, 979
AluI	AGCT	3 cut(s)	193, 817, 979
Alw26I	GTCTC	2 cut(s)	13, 581
AlwI	GGATC	1 cut(s)	746
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	3 cut(s)	462, 471, 994
ApeKI	GCWGC	1 cut(s)	976
ApoI	RAATTY	3 cut(s)	545, 575, 970
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	4 cut(s)	135, 314, 433, 483
AspS9I	GGNCC	3 cut(s)	389, 462, 471
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	996
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	988
BccI	CCATC	2 cut(s)	533, 661
BceAI	ACGGC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	13, 581
BfaI	CTAG	2 cut(s)	194, 629
BfmI	CTRYAG	2 cut(s)	50, 888
BfoI	RGCGCY	3 cut(s)	136, 315, 434
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	4 cut(s)	556, 633, 781, 977
BlsI	GCNGC	4 cut(s)	557, 634, 782, 978
BmcAI	AGTACT	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	389
BmeRI	GACNNNNNGTC	1 cut(s)	387
BmgT120I	GGNCC	3 cut(s)	389, 462, 471
BmiI	GGNNCC	4 cut(s)	171, 390, 463, 472
Bpu10I	CCTNAGC	2 cut(s)	326, 980
BpuEI	CTTGAG	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	29, 997
BsaWI	WCCGGW	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 87, 179, 494
Bse1I	ACTGG	2 cut(s)	432, 532
BseDI	CCNNGG	2 cut(s)	29, 997
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	4 cut(s)	35, 87, 179, 494
BseMII	CTCAG	4 cut(s)	317, 426, 607, 994
BseNI	ACTGG	2 cut(s)	432, 532
BseRI	GAGGAG	5 cut(s)	736, 739, 742, 745, 757
BseXI	GCAGC	1 cut(s)	988
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	464, 473, 996
BsiSI	CCGG	2 cut(s)	130, 775
BslFI	GGGAC	2 cut(s)	134, 808
BslI	CCNNNNNNNGG	4 cut(s)	35, 87, 179, 494
BsmAI	GTCTC	2 cut(s)	13, 581
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	134, 808
BsnI	GGCC	3 cut(s)	464, 473, 996
Bsp143I	GATC	5 cut(s)	147, 177, 698, 734, 751
Bsp19I	CCATGG	1 cut(s)	997
BspACI	CCGC	8 cut(s)	7, 14, 279, 503, 555, 633, 713, 780
BspANI	GGCC	3 cut(s)	464, 473, 996
BspCNI	CTCAG	4 cut(s)	318, 425, 606, 993
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	171, 390, 463, 472
BspMAI	CTGCAG	2 cut(s)	54, 892
BspPI	GGATC	1 cut(s)	746
BsrBI	CCGCTC	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	432, 532
BssECI	CCNNGG	2 cut(s)	29, 997
BssMI	GATC	5 cut(s)	147, 177, 698, 734, 751
BssT1I	CCWWGG	1 cut(s)	997
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	2 cut(s)	58, 77
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	4 cut(s)	326, 412, 593, 980
BstDSI	CCRYGG	2 cut(s)	29, 997
BstF5I	GGATG	1 cut(s)	653
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	3 cut(s)	136, 315, 434
BstHHI	GCGC	4 cut(s)	135, 314, 433, 483
BstKTI	GATC	5 cut(s)	150, 180, 701, 737, 754
BstMAI	GTCTC	2 cut(s)	13, 581
BstMBI	GATC	5 cut(s)	147, 177, 698, 734, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 77, 199, 470, 814
BstSFI	CTRYAG	2 cut(s)	50, 888
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	988
BstX2I	RGATCY	2 cut(s)	698, 751
BstXI	CCANNNNNNTGG	2 cut(s)	166, 917
BstYI	RGATCY	2 cut(s)	698, 751
BsuRI	GGCC	3 cut(s)	464, 473, 996
BtgI	CCRYGG	2 cut(s)	29, 997
BtsCI	GGATG	1 cut(s)	653
BtsIMutI	CAGTG	2 cut(s)	513, 601
Cac8I	GCNNGC	1 cut(s)	994
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	4 cut(s)	135, 314, 433, 483
Cfr13I	GGNCC	3 cut(s)	389, 462, 471
Csp6I	GTAC	4 cut(s)	525, 602, 680, 961
CviAII	CATG	4 cut(s)	86, 145, 289, 998
CviQI	GTAC	4 cut(s)	525, 602, 680, 961
DdeI	CTNAG	4 cut(s)	326, 412, 593, 980
DpnI	GATC	5 cut(s)	149, 179, 700, 736, 753
DpnII	GATC	5 cut(s)	147, 177, 698, 734, 751
DriI	GACNNNNNGTC	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	1 cut(s)	888
Eam1105I	GACNNNNNGTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	997
Eco47I	GGWCC	1 cut(s)	389
Eco47III	AGCGCT	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	997
ErhI	CCWWGG	1 cut(s)	997
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	4 cut(s)	89, 148, 292, 1001
FaiI	YATR	9 cut(s)	87, 146, 167, 206, 211, 213, 290, 491, 999
FaqI	GGGAC	2 cut(s)	134, 808
FatI	CATG	4 cut(s)	85, 144, 288, 997
FauI	CCCGC	2 cut(s)	7, 706
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	556, 633, 781, 977
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	4 cut(s)	556, 633, 781, 977
FspBI	CTAG	2 cut(s)	194, 629
GlaI	GCGC	4 cut(s)	134, 313, 432, 482
GluI	GCNGC	4 cut(s)	556, 633, 781, 977
HaeII	RGCGCY	3 cut(s)	136, 315, 434
HaeIII	GGCC	3 cut(s)	464, 473, 996
HapII	CCGG	2 cut(s)	130, 775
HhaI	GCGC	4 cut(s)	135, 314, 433, 483
Hin1II	CATG	4 cut(s)	89, 148, 292, 1001
Hin6I	GCGC	4 cut(s)	133, 312, 431, 481
HinP1I	GCGC	4 cut(s)	133, 312, 431, 481
HinfI	GANTC	4 cut(s)	589, 625, 869, 985
HpaII	CCGG	2 cut(s)	130, 775
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	3 cut(s)	370, 852, 907
Hpy188I	TCNGA	3 cut(s)	182, 415, 586
Hpy188III	TCNNGA	3 cut(s)	97, 145, 982
Hpy8I	GTNNAC	3 cut(s)	370, 852, 907
HpyAV	CCTTC	4 cut(s)	181, 238, 356, 515
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	7 cut(s)	52, 61, 202, 254, 890, 925, 976
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 77, 199, 470, 814
HpyF3I	CTNAG	4 cut(s)	326, 412, 593, 980
Hsp92II	CATG	4 cut(s)	89, 148, 292, 1001
HspAI	GCGC	4 cut(s)	133, 312, 431, 481
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	147, 177, 698, 734, 751
LmnI	GCTCC	2 cut(s)	190, 777
Lsp1109I	GCAGC	1 cut(s)	988
MaeI	CTAG	2 cut(s)	194, 629
MaeIII	GTNAC	3 cut(s)	220, 511, 565
MalI	GATC	5 cut(s)	149, 179, 700, 736, 753
MbiI	CCGCTC	1 cut(s)	780
MboI	GATC	5 cut(s)	147, 177, 698, 734, 751
MboII	GAAGA	3 cut(s)	271, 784, 905
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	2 cut(s)	698, 751
MlsI	TGGCCA	1 cut(s)	996
MluCI	AATT	6 cut(s)	534, 545, 575, 787, 970, 1003
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	3 cut(s)	583, 619, 878
MmeI	TCCRAC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	996
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	996
MseI	TTAA	2 cut(s)	953, 1006
Msp20I	TGGCCA	1 cut(s)	996
MspI	CCGG	2 cut(s)	130, 775
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	5 cut(s)	58, 77, 199, 470, 814
NcoI	CCATGG	1 cut(s)	997
NdeII	GATC	5 cut(s)	147, 177, 698, 734, 751
NlaIII	CATG	4 cut(s)	89, 148, 292, 1001
NlaIV	GGNNCC	4 cut(s)	171, 390, 463, 472
NmuCI	GTSAC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	985
PkrI	GCNGC	4 cut(s)	557, 634, 782, 978
PleI	GAGTC	3 cut(s)	583, 619, 877
PpsI	GAGTC	3 cut(s)	583, 619, 877
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	171, 390, 463, 472
PspPI	GGNCC	3 cut(s)	389, 462, 471
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	2 cut(s)	54, 892
PsuI	RGATCY	2 cut(s)	698, 751
RsaI	GTAC	4 cut(s)	526, 603, 681, 962
RsaNI	GTAC	4 cut(s)	525, 602, 680, 961
SaqAI	TTAA	2 cut(s)	953, 1006
SatI	GCNGC	4 cut(s)	556, 633, 781, 977
Sau3AI	GATC	5 cut(s)	147, 177, 698, 734, 751
Sau96I	GGNCC	3 cut(s)	389, 462, 471
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	3 cut(s)	583, 619, 878
SetI	ASST	9 cut(s)	96, 195, 222, 249, 369, 526, 667, 819, 981
SfcI	CTRYAG	2 cut(s)	50, 888
SfiI	GGCCNNNNNGGCC	1 cut(s)	470
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	6 cut(s)	534, 545, 575, 787, 970, 1003
SsiI	CCGC	8 cut(s)	7, 14, 279, 503, 555, 633, 713, 780
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	2 cut(s)	194, 629
StyI	CCWWGG	1 cut(s)	997
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	549, 719
TasI	AATT	6 cut(s)	534, 545, 575, 787, 970, 1003
TatI	WGTACW	2 cut(s)	601, 960
TauI	GCSGC	3 cut(s)	558, 635, 783
TfiI	GAWTC	1 cut(s)	985
Tru1I	TTAA	2 cut(s)	953, 1006
Tru9I	TTAA	2 cut(s)	953, 1006
TscAI	CASTG	2 cut(s)	520, 601
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	976
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	133, 277, 534
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	520, 601
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	3 cut(s)	545, 575, 970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	2 cut(s)	194, 629
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.