Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

450645 .. 451679

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCACAGCGTACTGGAACAATTGATGGGAAATTCGATTGCGGCTATCTTGTAACGGTGAAGTTGGGTTCGGAGATTCTCAGCGGAGTACTCTACCACCCCAACCAGCAGACTCTAGCCGGTCCTCCTAATCCAACTCCATCCCCCGAACCTGTCAATGCCATTGTACCCTACACACCCGCAACATCTGGTCGTGTTGCGGGTTTGAGGAGGAGGAGATCGATCACGATCGTTAAGGAGGAGGACAGACCCCAACTACCCAAAACCCAACCGGAGCGGCTACAATTTCTTCTTTGCAGAAACGCATTTCAAGCTCAAGTCCCATTACCCAAACAGAGAGAGGGAGTTTACCAAGATGATTGGCGAGTCTTGGAACAAACTCCCTGTTTACCAGAATATTGGGTTGCAAGACAAAGCAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAAAGTTTGCAGCTCAAGATTCAGACAGGCCATGGAAACTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

165

Amino Acids

18.61

Weight (kDa)

9.43

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AciI	CCGC	5 cut(s)	42, 84, 180, 200, 277
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	4 cut(s)	13, 90, 168, 444
AgsI	TTSAA	2 cut(s)	311, 437
AluBI	AGCT	2 cut(s)	314, 461
AluI	AGCT	2 cut(s)	314, 461
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	20, 148
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	43, 278, 459
BlsI	GCNGC	3 cut(s)	44, 279, 460
BmcAI	AGTACT	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	300, 447
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	4 cut(s)	223, 226, 229, 254
BseXI	GCAGC	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	120, 272
BslFI	GGGAC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	478
Bsp143I	GATC	3 cut(s)	218, 222, 228
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	5 cut(s)	42, 84, 180, 200, 277
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	93
BspDI	ATCGAT	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	3 cut(s)	218, 222, 228
BssT1I	CCWWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	80, 488
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	221, 225, 231
BstMBI	GATC	3 cut(s)	218, 222, 228
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	470
BstXI	CCANNNNNNTGG	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	478
BsuTUI	ATCGAT	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	4 cut(s)	12, 89, 167, 443
CviAII	CATG	1 cut(s)	480
CviJI	RGCY	6 cut(s)	45, 119, 280, 314, 461, 478
CviKI_1	RGCY	6 cut(s)	45, 119, 280, 314, 461, 478
CviQI	GTAC	4 cut(s)	12, 89, 167, 443
DdeI	CTNAG	2 cut(s)	80, 488
DpnI	GATC	3 cut(s)	220, 224, 230
DpnII	GATC	3 cut(s)	218, 222, 228
Eco130I	CCWWGG	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	1 cut(s)	483
FaiI	YATR	1 cut(s)	481
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	479
FauI	CCCGC	2 cut(s)	187, 193
Fnu4HI	GCNGC	3 cut(s)	43, 278, 459
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	3 cut(s)	43, 278, 459
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	43, 278, 459
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	2 cut(s)	120, 272
Hin1II	CATG	1 cut(s)	483
HinfI	GANTC	4 cut(s)	76, 112, 366, 467
HpaII	CCGG	2 cut(s)	120, 272
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	349, 389
Hpy188I	TCNGA	2 cut(s)	73, 472
Hpy188III	TCNNGA	2 cut(s)	226, 464
Hpy8I	GTNNAC	2 cut(s)	349, 389
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	297, 407, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	80, 488
Hsp92II	CATG	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	218, 222, 228
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	119, 133, 165, 174, 285, 397, 405, 460
Lsp1109I	GCAGC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	3, 52
MalI	GATC	3 cut(s)	220, 224, 230
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	3 cut(s)	218, 222, 228
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	3 cut(s)	21, 32, 284
MlyI	GAGTC	2 cut(s)	106, 375
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	135, 201, 204, 207, 232, 235, 334
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	2 cut(s)	120, 272
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	3 cut(s)	218, 222, 228
NlaIII	CATG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	2 cut(s)	76, 467
PkrI	GCNGC	3 cut(s)	44, 279, 460
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	2 cut(s)	106, 374
PpsI	GAGTC	2 cut(s)	106, 374
PspPI	GGNCC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	4 cut(s)	13, 90, 168, 444
RsaNI	GTAC	4 cut(s)	12, 89, 167, 443
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	43, 278, 459
Sau3AI	GATC	3 cut(s)	218, 222, 228
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	90
SchI	GAGTC	2 cut(s)	106, 375
SetI	ASST	3 cut(s)	154, 316, 463
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	315, 462
SmoI	CTYRAG	2 cut(s)	315, 462
Sse9I	AATT	3 cut(s)	21, 32, 284
SsiI	CCGC	5 cut(s)	42, 84, 180, 200, 277
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	36, 221
TasI	AATT	3 cut(s)	21, 32, 284
TatI	WGTACW	2 cut(s)	88, 442
TauI	GCSGC	2 cut(s)	45, 280
TfiI	GAWTC	2 cut(s)	76, 467
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	3
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	32
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.