Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

47661050 .. 47663357

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0324900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGATCACAGCTCTCAACAATCCCAAAACTACTACACAACCAAGATCCCATCTTTCTTTGGTTCTCCAAGATTCAGAGCCTTTTTCACAATAAAGGGTAGCCACTCTGAAACGGACCAAAACCCTATGATAAGTCCCACTTCAATCCTTGACACCAAGCTTTCACTCCCATTTGGAAACCATTTTTCATGTGACAAAAACCAACCCAGTTTAATCCCAAAGGCTTTGTCAGGGAACAAACGCTCTTGGGACAACTCAGAGGCCAAAGGCATTGGCCTTGCTCTTGTTGACACACTCATTGATGAAAAATCTGAAGTGAATAGTAGTAGTGCTTGTAAGCAAAGTAATGGGAATAAGGTCCTGTTTGGAACTAAGCTTAGAGTTCAAATACCTCCCTATCCGGCAAAAGGATCTTCTAATTCCGGCATCCAAACAGAGAACTCTAATTCGAATTCGAATTCTCCTCAGGCCTTTTCAAGGTGTGTCTCAGTGAGCAAAATGGAGCTTTCTGAGGACTATACATGTGTGATATCTCGTGGACCTAATCCAAGAACAACTCATATATTCGACAACTGTATTGTCGAAAGCTACTACACCTTATCGGATTCAGGTCACTTCTCCAAATCTGCTCCGGATAATTTCCTTAGCTTCTGTCACACATGCAAGAAGAATCTTGAGCAGAACGTTGACATTTACATCTACAGAGGTGACAAGGCCTTTTGCAGCCGCGAGTGCCGCTACCAAGAAATGCTCCTAGACGAGAAAGCTGGAAACCCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

262

Amino Acids

29.14

Weight (kDa)

7.54

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	209 - 256	1.2e-21	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	2 cut(s)	730, 739
AclI	AACGTT	1 cut(s)	687
AclWI	GGATC	2 cut(s)	43, 421
AcsI	RAATTY	3 cut(s)	454, 460, 782
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	410, 480
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	147, 389, 480
AluBI	AGCT	7 cut(s)	15, 163, 379, 508, 591, 651, 770
AluI	AGCT	7 cut(s)	15, 163, 379, 508, 591, 651, 770
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	43, 421
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	4 cut(s)	264, 277, 471, 717
ApeKI	GCWGC	1 cut(s)	726
ApoI	RAATTY	3 cut(s)	454, 460, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	3 cut(s)	118, 361, 542
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	2 cut(s)	452, 458
AvaII	GGWCC	3 cut(s)	118, 361, 542
AxyI	CCTNAGG	1 cut(s)	468
BauI	CACGAG	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	738
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	703
BisI	GCNGC	3 cut(s)	727, 730, 739
BlsI	GCNGC	3 cut(s)	728, 731, 740
Bme18I	GGWCC	3 cut(s)	118, 361, 542
BmgT120I	GGNCC	3 cut(s)	118, 361, 542
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	2 cut(s)	452, 458
BpuEI	CTTGAG	1 cut(s)	698
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 480
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	634
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	410, 480
BseMII	CTCAG	4 cut(s)	273, 482, 504, 504
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	266, 279, 473, 719
BsiSI	CCGG	3 cut(s)	404, 426, 635
BslFI	GGGAC	2 cut(s)	123, 266
BslI	CCNNNNNNNGG	2 cut(s)	410, 480
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	123, 266
BsnI	GGCC	4 cut(s)	266, 279, 473, 719
Bsp119I	TTCGAA	2 cut(s)	452, 458
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	7, 48, 413
BspACI	CCGC	2 cut(s)	730, 739
BspANI	GGCC	4 cut(s)	266, 279, 473, 719
BspCNI	CTCAG	4 cut(s)	272, 481, 503, 505
BspEI	TCCGGA	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	732
BspPI	GGATC	2 cut(s)	43, 421
BspT104I	TTCGAA	2 cut(s)	452, 458
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	7, 48, 413
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	578
BstBI	TTCGAA	2 cut(s)	452, 458
BstDEI	CTNAG	7 cut(s)	259, 375, 380, 468, 490, 513, 647
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	3 cut(s)	10, 51, 416
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	3 cut(s)	7, 48, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	735, 738
BstNSI	RCATGY	2 cut(s)	528, 666
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	738
BstX2I	RGATCY	2 cut(s)	48, 413
BstYI	RGATCY	2 cut(s)	48, 413
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	266, 279, 473, 719
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	118, 361, 542
CviAII	CATG	3 cut(s)	192, 525, 663
DdeI	CTNAG	7 cut(s)	259, 375, 380, 468, 490, 513, 647
DpnI	GATC	3 cut(s)	9, 50, 415
DpnII	GATC	3 cut(s)	7, 48, 413
Eco147I	AGGCCT	2 cut(s)	473, 719
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	3 cut(s)	118, 361, 542
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	468
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	454, 460
EcoRV	GATATC	1 cut(s)	534
FaeI	CATG	3 cut(s)	195, 528, 666
FaiI	YATR	7 cut(s)	131, 193, 522, 526, 564, 566, 664
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	2 cut(s)	123, 266
FatI	CATG	3 cut(s)	191, 524, 662
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	727, 730, 739
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	727, 730, 739
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	3 cut(s)	727, 730, 739
HaeIII	GGCC	4 cut(s)	266, 279, 473, 719
HapII	CCGG	3 cut(s)	404, 426, 635
Hin1II	CATG	3 cut(s)	195, 528, 666
HincII	GTYRAC	2 cut(s)	292, 691
HindII	GTYRAC	2 cut(s)	292, 691
HindIII	AAGCTT	2 cut(s)	161, 377
HinfI	GANTC	3 cut(s)	75, 608, 673
HpaII	CCGG	3 cut(s)	404, 426, 635
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	292, 542, 691
Hpy188I	TCNGA	6 cut(s)	80, 112, 262, 316, 514, 607
Hpy188III	TCNNGA	2 cut(s)	635, 677
Hpy8I	GTNNAC	3 cut(s)	292, 542, 691
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	2 cut(s)	666, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	735, 738
HpyF3I	CTNAG	7 cut(s)	259, 375, 380, 468, 490, 513, 647
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	3 cut(s)	195, 528, 666
Kpn2I	TCCGGA	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 48, 413
LmnI	GCTCC	3 cut(s)	505, 637, 759
LpnPI	CCDG	9 cut(s)	219, 223, 377, 417, 439, 455, 597, 648, 756
Lsp1109I	GCAGC	1 cut(s)	738
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	4 cut(s)	194, 614, 656, 710
MalI	GATC	3 cut(s)	9, 50, 415
MboI	GATC	3 cut(s)	7, 48, 413
MboII	GAAGA	2 cut(s)	408, 682
MflI	RGATCY	2 cut(s)	48, 413
MluCI	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
MnlI	CCTC	5 cut(s)	256, 405, 477, 508, 701
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	1 cut(s)	215
MspI	CCGG	3 cut(s)	404, 426, 635
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	2 cut(s)	735, 738
NdeII	GATC	3 cut(s)	7, 48, 413
NlaIII	CATG	3 cut(s)	195, 528, 666
NmuCI	GTSAC	4 cut(s)	194, 614, 656, 710
NspI	RCATGY	2 cut(s)	528, 666
NspV	TTCGAA	2 cut(s)	452, 458
PceI	AGGCCT	2 cut(s)	473, 719
PciI	ACATGT	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	75, 608, 673
PkrI	GCNGC	3 cut(s)	728, 731, 740
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	524
Psp1406I	AACGTT	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	118, 361, 542
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	48, 413
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	727, 730, 739
Sau3AI	GATC	3 cut(s)	7, 48, 413
Sau96I	GGNCC	3 cut(s)	118, 361, 542
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	703
SfuI	TTCGAA	2 cut(s)	452, 458
SinI	GGWCC	3 cut(s)	118, 361, 542
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
SseBI	AGGCCT	2 cut(s)	473, 719
SsiI	CCGC	2 cut(s)	730, 739
SspMI	CTAG	1 cut(s)	758
StuI	AGGCCT	2 cut(s)	473, 719
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	4 cut(s)	452, 458, 570, 585
TasI	AATT	6 cut(s)	421, 448, 454, 460, 640, 782
TauI	GCSGC	2 cut(s)	732, 741
TfiI	GAWTC	3 cut(s)	75, 608, 673
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	4 cut(s)	194, 614, 656, 710
TseI	GCWGC	1 cut(s)	726
Tsp45I	GTSAC	4 cut(s)	194, 614, 656, 710
TspDTI	ATGAA	2 cut(s)	180, 321
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	118, 361, 542
XagI	CCTNNNNNAGG	1 cut(s)	478
XapI	RAATTY	3 cut(s)	454, 460, 782
XceI	RCATGY	2 cut(s)	528, 666
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.