Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

53163910 .. 53164904

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTCTCCATCTCAAGCTTCATTAGCATTGACTGTGGGATTCAGGAGAACTCCAGCTATTCTGAGAAGACAACAGAAATTAACTACATTTCAGATGCAACATTCATAGACACTGGTGAAAGAGAATTGGTATTGCCTGCTAACAGAAACAACTACCAACAGCCGTACTGGTCTCTTAGGAGCTTCCCTCAAGGAACCAGGAACTGCTACAAAATAATTGTTGAAAGTGCCACCAGATATCTGATTAGAGCCAGCTTCTTTTATGGGAATTATGATGGAGAAAACAAATTGCCACAATTTGAACTACATCTTGGACCTAATTTGTGGGACTCGGTGAGTTTGACCGATGCCTCTAATCCCACAACCAAGGAGCTCATACACAATGTCCCAGCTAACACAACATATATACATGTTTGTCTGGTGAACACAGGCTCTGGGGTTCCATTTATATCAATAATTGAACTCAGGCCTTTGCCCAGTACAACATATCAGACAGAAATGGGGTCTTTAGGACTTTATGTGCGGCTTGACACTGGTCAATCACCATCTAATTATACAGGATATAGGTTTCCAGTTGATATTCATGATCGATTTTGGTATAACTATGCCCAAAGTGATTGGACAAAAATAAGTACCTTATCCACCACCTTCAACTCTGCACCTGATAATGATTACAACCCACCATCTATTGTAATGCGTACAGCTGCCACTCCGAAACTTGAAAGTGATAACTTGAGTTTCTACTGGCTGCCTACTGATCCAAGTGCAGAATTTTATGTATACATGCACTTTTCAGAAGTTGTAGAGCTCCAAGCCAACCAGTCTAGACAGCTTGATATTACTTGGAATGGAGAGCACTACTATGGGCCATTTGTTGGGAAAAGTAATAGAATGGAAATAATAACTCCAACCACAAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

307

Amino Acids

35.13

Weight (kDa)

5.07

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	10 - 301	8.8e-100	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	1 cut(s)	523
AclWI	GGATC	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	770
AfaI	GTAC	4 cut(s)	167, 481, 634, 700
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	5 cut(s)	224, 302, 461, 652, 722
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	9 cut(s)	18, 57, 183, 255, 373, 392, 704, 808, 832
AluI	AGCT	9 cut(s)	18, 57, 183, 255, 373, 392, 704, 808, 832
Alw21I	GWGCWC	3 cut(s)	375, 810, 858
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	2 cut(s)	204, 434
AoxI	GGCC	2 cut(s)	467, 866
ApeKI	GCWGC	2 cut(s)	704, 748
ApoI	RAATTY	1 cut(s)	770
AspS9I	GGNCC	2 cut(s)	314, 866
AsuHPI	GGTGA	4 cut(s)	128, 346, 433, 534
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	375, 810
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	3 cut(s)	375, 810, 858
BbvI	GCAGC	2 cut(s)	691, 735
BccI	CCATC	4 cut(s)	17, 269, 553, 691
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	825
BisI	GCNGC	3 cut(s)	524, 705, 749
BlsI	GCNGC	3 cut(s)	525, 706, 750
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	314, 866
BmiI	GGNNCC	2 cut(s)	196, 441
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	85, 337
BmuI	ACTGGG	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	174, 754
Bsa29I	ATCGAT	1 cut(s)	589
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	7 cut(s)	118, 173, 477, 538, 572, 749, 820
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMII	CTCAG	2 cut(s)	54, 478
BseNI	ACTGG	7 cut(s)	118, 173, 477, 538, 572, 749, 820
BseXI	GCAGC	2 cut(s)	691, 735
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	2 cut(s)	642, 786
BshFI	GGCC	2 cut(s)	469, 868
BshVI	ATCGAT	1 cut(s)	589
BsiHKAI	GWGCWC	3 cut(s)	375, 810, 858
BslFI	GGGAC	2 cut(s)	341, 371
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	341, 371
BsnI	GGCC	2 cut(s)	469, 868
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	375, 810, 858
Bsp143I	GATC	2 cut(s)	586, 757
BspACI	CCGC	1 cut(s)	523
BspANI	GGCC	2 cut(s)	469, 868
BspCNI	CTCAG	2 cut(s)	55, 477
BspDI	ATCGAT	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	196, 441
BspPI	GGATC	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	177
BsrI	ACTGG	7 cut(s)	118, 173, 477, 538, 572, 749, 820
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	586, 757
BssNAI	GTATAC	1 cut(s)	781
BssT1I	CCWWGG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	781
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	138, 253
BstDEI	CTNAG	3 cut(s)	63, 176, 464
BstKTI	GATC	2 cut(s)	589, 760
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	586, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	2 cut(s)	413, 787
BstPAI	GACNNNNGTC	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	691, 735
BstV2I	GAAGAC	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	781
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	469, 868
BsuTUI	ATCGAT	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	111, 531
Cac8I	GCNNGC	2 cut(s)	138, 253
CaiI	CAGNNNCTG	2 cut(s)	204, 434
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	314, 866
ClaI	ATCGAT	1 cut(s)	589
Csp6I	GTAC	4 cut(s)	166, 480, 633, 699
CviAII	CATG	3 cut(s)	410, 584, 784
CviQI	GTAC	4 cut(s)	166, 480, 633, 699
DdeI	CTNAG	3 cut(s)	63, 176, 464
DpnI	GATC	2 cut(s)	588, 759
DpnII	GATC	2 cut(s)	586, 757
Ecl136II	GAGCTC	2 cut(s)	373, 808
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	375, 810
Eco31I	GGTCTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	2 cut(s)	373, 808
EcoICRI	GAGCTC	2 cut(s)	373, 808
EcoRII	CCWGG	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	375, 810
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	413, 587, 787
FaqI	GGGAC	2 cut(s)	341, 371
FatI	CATG	3 cut(s)	409, 583, 783
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	524, 705, 749
FriOI	GRGCYC	2 cut(s)	375, 810
Fsp4HI	GCNGC	3 cut(s)	524, 705, 749
FspBI	CTAG	1 cut(s)	825
GluI	GCNGC	3 cut(s)	524, 705, 749
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	469, 868
Hin1II	CATG	3 cut(s)	413, 587, 787
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	40, 329
HphI	GGTGA	4 cut(s)	128, 346, 433, 534
Hpy166II	GTNNAC	2 cut(s)	424, 781
Hpy188I	TCNGA	6 cut(s)	64, 94, 243, 492, 714, 796
Hpy188III	TCNNGA	3 cut(s)	44, 584, 825
Hpy8I	GTNNAC	2 cut(s)	424, 781
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	98, 659, 767, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	63, 176, 464
Hsp92II	CATG	3 cut(s)	413, 587, 787
Kzo9I	GATC	2 cut(s)	586, 757
LmnI	GCTCC	3 cut(s)	180, 370, 813
Lsp1109I	GCAGC	2 cut(s)	691, 735
LweI	GCATC	2 cut(s)	85, 337
MaeI	CTAG	1 cut(s)	825
MalI	GATC	2 cut(s)	588, 759
MboI	GATC	2 cut(s)	586, 757
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	375, 810, 858
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	2 cut(s)	198, 361
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	861
MspA1I	CMGCKG	1 cut(s)	704
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	586, 757
NlaIII	CATG	3 cut(s)	413, 587, 787
NlaIV	GGNNCC	2 cut(s)	196, 441
NspI	RCATGY	2 cut(s)	413, 787
PagI	TCATGA	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	3 cut(s)	525, 706, 750
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PscI	ACATGT	1 cut(s)	409
PshAI	GACNNNNGTC	1 cut(s)	534
Psp124BI	GAGCTC	2 cut(s)	375, 810
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	196, 441
PspPI	GGNCC	2 cut(s)	314, 866
PstNI	CAGNNNCTG	2 cut(s)	204, 434
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	4 cut(s)	167, 481, 634, 700
RsaNI	GTAC	4 cut(s)	166, 480, 633, 699
RseI	CAYNNNNRTG	1 cut(s)	861
SacI	GAGCTC	2 cut(s)	375, 810
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	524, 705, 749
Sau3AI	GATC	2 cut(s)	586, 757
Sau96I	GGNCC	2 cut(s)	314, 866
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	3 cut(s)	375, 810, 858
SfaNI	GCATC	2 cut(s)	85, 337
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	3 cut(s)	13, 189, 733
SmoI	CTYRAG	3 cut(s)	13, 189, 733
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	1 cut(s)	523
SspMI	CTAG	1 cut(s)	825
SstI	GAGCTC	2 cut(s)	375, 810
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	589
TaqII	GACCGA	1 cut(s)	359
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	118, 538
TseI	GCWGC	2 cut(s)	704, 748
TspDTI	ATGAA	3 cut(s)	10, 94, 572
TspRI	CASTG	2 cut(s)	118, 538
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	770
XbaI	TCTAGA	1 cut(s)	824
XceI	RCATGY	2 cut(s)	413, 787
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.