Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

11507467 .. 11510204

Gene Structure 2738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTGAGAGTGAACGTCTCTCGCCGTCTTCCATTCTTCACTTCTCTCAGAGATCAATTGATTCAATTCAATGCTGTTCAAAACTATCTGCTAGTTCTCGACAGGAAATTGACTGGAGTGACCTTCTATACTCCCGACCCGCAACTTCTCTACATATGTGGAACTAAGCAAGAGTCTGATGGAGAGCTCAATGGAATCCTCGGATTCCGTGATGATCAGATTATGTCATCTTACCTCATTGGTGACAAGAGGTCCTGCATCTTTGATGCCCAATCTGGTACTGCAACGAGCAATAGATTTTTCAATCTTGTAGCCTGGTGCAACATGGAATGGGGTTTCTGTTCTCGTATGATGGACTTCATTTCATACATGGATTCACATCGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

129

Amino Acids

14.96

Weight (kDa)

6.54

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_C	PF02800	56 - 107	7.9e-07	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	65, 70, 80, 304
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	2 cut(s)	173, 346
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	252
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	256, 267
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	52, 214
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	52, 214
Bst2UI	CCWGG	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	47, 165
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	55, 217
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	52, 214
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	20
BtgZI	GCGATG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	325, 370
CviJI	RGCY	2 cut(s)	187, 314
CviKI_1	RGCY	2 cut(s)	187, 314
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	47, 165
DpnI	GATC	2 cut(s)	54, 216
DpnII	GATC	2 cut(s)	52, 214
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1105I	GACNNNNNGTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	328, 373
FaiI	YATR	8 cut(s)	129, 155, 157, 224, 326, 350, 367, 371
FatI	CATG	2 cut(s)	324, 369
FauI	CCCGC	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	328, 373
HinfI	GANTC	5 cut(s)	61, 173, 195, 204, 374
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	50, 178, 203, 219
Hpy188III	TCNNGA	2 cut(s)	98, 134
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	258, 284, 321
HpyF3I	CTNAG	2 cut(s)	47, 165
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	328, 373
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	52, 214
LpnPI	CCDG	6 cut(s)	88, 99, 261, 268, 301, 328
LweI	GCATC	2 cut(s)	256, 267
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	118, 242
MalI	GATC	2 cut(s)	54, 216
MboI	GATC	2 cut(s)	52, 214
MboII	GAAGA	2 cut(s)	20, 28
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	3 cut(s)	56, 65, 107
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	209, 243, 245
MspR9I	CCNGG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	2 cut(s)	52, 214
NlaIII	CATG	2 cut(s)	328, 373
NmuCI	GTSAC	2 cut(s)	118, 242
PfeI	GAWTC	4 cut(s)	61, 195, 204, 374
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	52, 214
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	5 cut(s)	18, 125, 189, 237, 254
SfaNI	GCATC	2 cut(s)	256, 267
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	56, 65, 107
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	314
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	56, 65, 107
TfiI	GAWTC	4 cut(s)	61, 195, 204, 374
TseFI	GTSAC	2 cut(s)	118, 242
Tsp45I	GTSAC	2 cut(s)	118, 242
TspDTI	ATGAA	2 cut(s)	349, 354
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	252
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.