Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 113 - 246 | 1.7e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 323 - 456 | 1.7e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 358 - 417 | 3.7e-08 | Leucine rich repeat |
| PK_Tyr_Ser-Thr | PF07714 | 641 - 911 | 1.3e-26 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 641 - 846 | 6.4e-25 | Protein kinase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 68 |
| Acc36I | ACCTGC | 2 cut(s) | 68, 534 |
| Acc65I | GGTACC | 1 cut(s) | 1184 |
| AccB1I | GGYRCC | 1 cut(s) | 1184 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 283, 1058 |
| AccI | GTMKAC | 1 cut(s) | 2444 |
| AccIII | TCCGGA | 1 cut(s) | 688 |
| AciI | CCGC | 1 cut(s) | 267 |
| AclWI | GGATC | 8 cut(s) | 387, 400, 1167, 2366, 2379, 2406, 2419, 2497 |
| AcoI | YGGCCR | 4 cut(s) | 183, 2216, 2700, 2708 |
| AcsI | RAATTY | 9 cut(s) | 35, 415, 552, 684, 983, 1015, 1243, 1378, 1585 |
| AcuI | CTGAAG | 3 cut(s) | 762, 1830, 2687 |
| AfaI | GTAC | 4 cut(s) | 1186, 1554, 1833, 1936 |
| AflIII | ACRYGT | 1 cut(s) | 1209 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2166 |
| AjnI | CCWGG | 3 cut(s) | 211, 253, 2464 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2212, 2244 |
| Alw21I | GWGCWC | 2 cut(s) | 157, 1634 |
| Alw26I | GTCTC | 4 cut(s) | 138, 144, 1459, 1741 |
| AlwI | GGATC | 8 cut(s) | 387, 400, 1167, 2366, 2379, 2406, 2419, 2497 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2408, 2465 |
| Ama87I | CYCGRG | 1 cut(s) | 834 |
| Aor13HI | TCCGGA | 1 cut(s) | 688 |
| ApeKI | GCWGC | 6 cut(s) | 264, 849, 1300, 1799, 2137, 2660 |
| ApoI | RAATTY | 9 cut(s) | 35, 415, 552, 684, 983, 1015, 1243, 1378, 1585 |
| AseI | ATTAAT | 1 cut(s) | 189 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 975, 2736 |
| Asp718I | GGTACC | 1 cut(s) | 1184 |
| AspLEI | GCGC | 1 cut(s) | 2097 |
| AspS9I | GGNCC | 4 cut(s) | 559, 752, 1403, 1547 |
| AsuC2I | CCSGG | 1 cut(s) | 2699 |
| AsuHPI | GGTGA | 3 cut(s) | 980, 2024, 2569 |
| AsuII | TTCGAA | 1 cut(s) | 1529 |
| AvaI | CYCGRG | 1 cut(s) | 834 |
| AvaII | GGWCC | 1 cut(s) | 1547 |
| BalI | TGGCCA | 2 cut(s) | 185, 2218 |
| BamHI | GGATCC | 3 cut(s) | 392, 2371, 2411 |
| BanI | GGYRCC | 1 cut(s) | 1184 |
| BanII | GRGCYC | 2 cut(s) | 348, 1634 |
| Bbv12I | GWGCWC | 2 cut(s) | 157, 1634 |
| BbvI | GCAGC | 6 cut(s) | 251, 836, 1287, 1786, 2124, 2672 |
| BccI | CCATC | 6 cut(s) | 1401, 1492, 1683, 1981, 2315, 2383 |
| BceAI | ACGGC | 1 cut(s) | 2723 |
| BciT130I | CCWGG | 3 cut(s) | 213, 255, 2466 |
| BcnI | CCSGG | 1 cut(s) | 2699 |
| BcoDI | GTCTC | 4 cut(s) | 138, 144, 1459, 1741 |
| BfaI | CTAG | 6 cut(s) | 476, 591, 698, 746, 864, 2090 |
| BfmI | CTRYAG | 3 cut(s) | 850, 1076, 1746 |
| BfuAI | ACCTGC | 2 cut(s) | 68, 534 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1978 |
| BglII | AGATCT | 1 cut(s) | 503 |
| BisI | GCNGC | 6 cut(s) | 265, 850, 1301, 1800, 2138, 2661 |
| BlpI | GCTNAGC | 3 cut(s) | 156, 1505, 2621 |
| BlsI | GCNGC | 6 cut(s) | 266, 851, 1302, 1801, 2139, 2662 |
| BmcAI | AGTACT | 1 cut(s) | 1936 |
| Bme1390I | CCNGG | 4 cut(s) | 213, 255, 2466, 2699 |
| Bme18I | GGWCC | 1 cut(s) | 1547 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2166 |
| BmeT110I | CYCGRG | 1 cut(s) | 834 |
| BmgT120I | GGNCC | 4 cut(s) | 559, 752, 1403, 1547 |
| BmiI | GGNNCC | 5 cut(s) | 394, 1186, 1822, 2373, 2413 |
| BmrFI | CCNGG | 4 cut(s) | 213, 255, 2466, 2699 |
| BmrI | ACTGGG | 2 cut(s) | 124, 1947 |
| BmsI | GCATC | 2 cut(s) | 876, 2149 |
| BmuI | ACTGGG | 2 cut(s) | 124, 1947 |
| BpmI | CTGGAG | 4 cut(s) | 809, 1035, 2415, 2519 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 156, 1505, 2621 |
| Bpu14I | TTCGAA | 1 cut(s) | 1529 |
| BpuEI | CTTGAG | 2 cut(s) | 449, 1316 |
| BpuMI | CCSGG | 1 cut(s) | 2699 |
| BsaJI | CCNNGG | 4 cut(s) | 212, 388, 1399, 2010 |
| BsaWI | WCCGGW | 2 cut(s) | 688, 1094 |
| Bse3DI | GCAATG | 3 cut(s) | 87, 1336, 2314 |
| BseAI | TCCGGA | 1 cut(s) | 688 |
| BseBI | CCWGG | 3 cut(s) | 213, 255, 2466 |
| BseDI | CCNNGG | 4 cut(s) | 212, 388, 1399, 2010 |
| BseGI | GGATG | 4 cut(s) | 867, 2326, 2375, 2694 |
| BseMI | GCAATG | 3 cut(s) | 87, 1336, 2314 |
| BseRI | GAGGAG | 2 cut(s) | 373, 1624 |
| BseXI | GCAGC | 6 cut(s) | 251, 836, 1287, 1786, 2124, 2672 |
| BseYI | CCCAGC | 2 cut(s) | 116, 481 |
| BsgI | GTGCAG | 2 cut(s) | 2421, 2668 |
| BshNI | GGYRCC | 1 cut(s) | 1184 |
| BsiHKAI | GWGCWC | 2 cut(s) | 157, 1634 |
| BsiHKCI | CYCGRG | 1 cut(s) | 834 |
| BsiSI | CCGG | 3 cut(s) | 689, 1095, 2699 |
| BslFI | GGGAC | 3 cut(s) | 1319, 1954, 2173 |
| BsmAI | GTCTC | 4 cut(s) | 138, 144, 1459, 1741 |
| BsmFI | GGGAC | 3 cut(s) | 1319, 1954, 2173 |
| BsmI | GAATGC | 3 cut(s) | 673, 900, 1506 |
| BsoBI | CYCGRG | 1 cut(s) | 834 |
| Bsp119I | TTCGAA | 1 cut(s) | 1529 |
| Bsp1286I | GDGCHC | 3 cut(s) | 157, 348, 1634 |
| Bsp13I | TCCGGA | 1 cut(s) | 688 |
| Bsp143I | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 156, 1505, 2621 |
| Bsp19I | CCATGG | 2 cut(s) | 388, 2010 |
| BspACI | CCGC | 1 cut(s) | 267 |
| BspEI | TCCGGA | 1 cut(s) | 688 |
| BspHI | TCATGA | 4 cut(s) | 163, 310, 1267, 2179 |
| BspLI | GGNNCC | 5 cut(s) | 394, 1186, 1822, 2373, 2413 |
| BspMAI | CTGCAG | 2 cut(s) | 854, 1080 |
| BspMI | ACCTGC | 2 cut(s) | 68, 534 |
| BspPI | GGATC | 8 cut(s) | 387, 400, 1167, 2366, 2379, 2406, 2419, 2497 |
| BspQI | GCTCTTC | 1 cut(s) | 189 |
| BspT104I | TTCGAA | 1 cut(s) | 1529 |
| BspT107I | GGYRCC | 1 cut(s) | 1184 |
| BsrDI | GCAATG | 3 cut(s) | 87, 1336, 2314 |
| BssECI | CCNNGG | 4 cut(s) | 212, 388, 1399, 2010 |
| BssMI | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| BssNAI | GTATAC | 1 cut(s) | 2445 |
| BssT1I | CCWWGG | 2 cut(s) | 388, 2010 |
| Bst1107I | GTATAC | 1 cut(s) | 2445 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 255, 2466 |
| Bst4CI | ACNGT | 9 cut(s) | 245, 621, 913, 1103, 1283, 1655, 1747, 1954, 2629 |
| Bst6I | CTCTTC | 3 cut(s) | 189, 1413, 1785 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 264, 1228 |
| BstBI | TTCGAA | 1 cut(s) | 1529 |
| BstC8I | GCNNGC | 1 cut(s) | 2658 |
| BstDSI | CCRYGG | 3 cut(s) | 388, 1399, 2010 |
| BstEII | GGTNACC | 1 cut(s) | 485 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1419, 2583 |
| BstF5I | GGATG | 4 cut(s) | 867, 2326, 2375, 2694 |
| BstHHI | GCGC | 1 cut(s) | 2097 |
| BstKTI | GATC | 9 cut(s) | 301, 395, 506, 889, 1162, 1888, 2374, 2414, 2505 |
| BstMAI | GTCTC | 4 cut(s) | 138, 144, 1459, 1741 |
| BstMBI | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 264, 1063, 1228, 1300, 1904, 1978, 2062 |
| BstNI | CCWGG | 3 cut(s) | 213, 255, 2466 |
| BstNSI | RCATGY | 1 cut(s) | 1213 |
| BstPI | GGTNACC | 1 cut(s) | 485 |
| BstSCI | CCNGG | 4 cut(s) | 211, 253, 2464, 2697 |
| BstSFI | CTRYAG | 3 cut(s) | 850, 1076, 1746 |
| BstV1I | GCAGC | 6 cut(s) | 251, 836, 1287, 1786, 2124, 2672 |
| BstX2I | RGATCY | 6 cut(s) | 392, 503, 1159, 2371, 2411, 2502 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 181, 1400, 2245 |
| BstYI | RGATCY | 6 cut(s) | 392, 503, 1159, 2371, 2411, 2502 |
| BstZ17I | GTATAC | 1 cut(s) | 2445 |
| BtgI | CCRYGG | 3 cut(s) | 388, 1399, 2010 |
| BtsCI | GGATG | 4 cut(s) | 867, 2326, 2375, 2694 |
| BtsIMutI | CAGTG | 8 cut(s) | 617, 1625, 1660, 1842, 1950, 1998, 2663, 2685 |
| BveI | ACCTGC | 2 cut(s) | 68, 534 |
| Cac8I | GCNNGC | 1 cut(s) | 2658 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2408, 2465 |
| CciI | TCATGA | 4 cut(s) | 163, 310, 1267, 2179 |
| CfoI | GCGC | 1 cut(s) | 2097 |
| Cfr13I | GGNCC | 4 cut(s) | 559, 752, 1403, 1547 |
| CseI | GACGC | 1 cut(s) | 2621 |
| Csp6I | GTAC | 4 cut(s) | 1185, 1553, 1832, 1935 |
| CviQI | GTAC | 4 cut(s) | 1185, 1553, 1832, 1935 |
| DpnI | GATC | 9 cut(s) | 300, 394, 505, 888, 1161, 1887, 2373, 2413, 2504 |
| DpnII | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2166 |
| EaeI | YGGCCR | 4 cut(s) | 183, 2216, 2700, 2708 |
| Eam1104I | CTCTTC | 3 cut(s) | 189, 1413, 1785 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2166 |
| EarI | CTCTTC | 3 cut(s) | 189, 1413, 1785 |
| Ecl136II | GAGCTC | 1 cut(s) | 1632 |
| Eco130I | CCWWGG | 2 cut(s) | 388, 2010 |
| Eco147I | AGGCCT | 1 cut(s) | 2534 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 1634 |
| Eco32I | GATATC | 1 cut(s) | 1201 |
| Eco47I | GGWCC | 1 cut(s) | 1547 |
| Eco53kI | GAGCTC | 1 cut(s) | 1632 |
| Eco57I | CTGAAG | 3 cut(s) | 762, 1830, 2687 |
| Eco88I | CYCGRG | 1 cut(s) | 834 |
| Eco91I | GGTNACC | 1 cut(s) | 485 |
| EcoICRI | GAGCTC | 1 cut(s) | 1632 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1419, 2583 |
| EcoO109I | RGGNCCY | 1 cut(s) | 559 |
| EcoO65I | GGTNACC | 1 cut(s) | 485 |
| EcoRI | GAATTC | 1 cut(s) | 1243 |
| EcoRII | CCWGG | 3 cut(s) | 211, 253, 2464 |
| EcoRV | GATATC | 1 cut(s) | 1201 |
| EcoT14I | CCWWGG | 2 cut(s) | 388, 2010 |
| EcoT22I | ATGCAT | 1 cut(s) | 673 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 1634 |
| ErhI | CCWWGG | 2 cut(s) | 388, 2010 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2640, 2672 |
| FaqI | GGGAC | 3 cut(s) | 1319, 1954, 2173 |
| FblI | GTMKAC | 1 cut(s) | 2444 |
| Fnu4HI | GCNGC | 6 cut(s) | 265, 850, 1301, 1800, 2138, 2661 |
| FokI | GGATG | 4 cut(s) | 854, 2333, 2362, 2681 |
| FriOI | GRGCYC | 2 cut(s) | 348, 1634 |
| Fsp4HI | GCNGC | 6 cut(s) | 265, 850, 1301, 1800, 2138, 2661 |
| FspBI | CTAG | 6 cut(s) | 476, 591, 698, 746, 864, 2090 |
| GlaI | GCGC | 1 cut(s) | 2096 |
| GluI | GCNGC | 6 cut(s) | 265, 850, 1301, 1800, 2138, 2661 |
| GsaI | CCCAGC | 2 cut(s) | 120, 485 |
| GsuI | CTGGAG | 4 cut(s) | 809, 1035, 2415, 2519 |
| HapII | CCGG | 3 cut(s) | 689, 1095, 2699 |
| HgaI | GACGC | 1 cut(s) | 2621 |
| HhaI | GCGC | 1 cut(s) | 2097 |
| Hin6I | GCGC | 1 cut(s) | 2095 |
| HinP1I | GCGC | 1 cut(s) | 2095 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HindIII | AAGCTT | 2 cut(s) | 351, 1436 |
| HpaII | CCGG | 3 cut(s) | 689, 1095, 2699 |
| HphI | GGTGA | 3 cut(s) | 980, 2024, 2569 |
| Hpy166II | GTNNAC | 4 cut(s) | 229, 1957, 2072, 2445 |
| Hpy188I | TCNGA | 7 cut(s) | 238, 494, 712, 872, 1474, 1575, 1874 |
| Hpy8I | GTNNAC | 4 cut(s) | 229, 1957, 2072, 2445 |
| HpyCH4III | ACNGT | 9 cut(s) | 245, 621, 913, 1103, 1283, 1655, 1747, 1954, 2629 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 264, 1063, 1228, 1300, 1904, 1978, 2062 |
| HspAI | GCGC | 1 cut(s) | 2095 |
| Kpn2I | TCCGGA | 1 cut(s) | 688 |
| KpnI | GGTACC | 1 cut(s) | 1188 |
| Kzo9I | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| LguI | GCTCTTC | 1 cut(s) | 189 |
| LmnI | GCTCC | 5 cut(s) | 108, 1637, 1820, 2467, 2581 |
| Lsp1109I | GCAGC | 6 cut(s) | 251, 836, 1287, 1786, 2124, 2672 |
| LweI | GCATC | 2 cut(s) | 876, 2149 |
| MaeI | CTAG | 6 cut(s) | 476, 591, 698, 746, 864, 2090 |
| MaeIII | GTNAC | 8 cut(s) | 328, 485, 593, 1097, 1205, 1741, 2324, 2455 |
| MalI | GATC | 9 cut(s) | 300, 394, 505, 888, 1161, 1887, 2373, 2413, 2504 |
| MboI | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| MfeI | CAATTG | 1 cut(s) | 1881 |
| MflI | RGATCY | 6 cut(s) | 392, 503, 1159, 2371, 2411, 2502 |
| MhlI | GDGCHC | 3 cut(s) | 157, 348, 1634 |
| MlsI | TGGCCA | 2 cut(s) | 185, 2218 |
| MluNI | TGGCCA | 2 cut(s) | 185, 2218 |
| MmeI | TCCRAC | 5 cut(s) | 762, 1014, 2323, 2349, 2621 |
| Mox20I | TGGCCA | 2 cut(s) | 185, 2218 |
| Mph1103I | ATGCAT | 1 cut(s) | 673 |
| MroI | TCCGGA | 1 cut(s) | 688 |
| MroXI | GAANNNNTTC | 2 cut(s) | 975, 2736 |
| MscI | TGGCCA | 2 cut(s) | 185, 2218 |
| MseI | TTAA | 9 cut(s) | 189, 378, 818, 1149, 1287, 1376, 1494, 1521, 1902 |
| MslI | CAYNNNNRTG | 3 cut(s) | 91, 1398, 2243 |
| Msp20I | TGGCCA | 2 cut(s) | 185, 2218 |
| MspI | CCGG | 3 cut(s) | 689, 1095, 2699 |
| MspR9I | CCNGG | 4 cut(s) | 213, 255, 2466, 2699 |
| MunI | CAATTG | 1 cut(s) | 1881 |
| Mva1269I | GAATGC | 3 cut(s) | 673, 900, 1506 |
| MvaI | CCWGG | 3 cut(s) | 213, 255, 2466 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 264, 1063, 1228, 1300, 1904, 1978, 2062 |
| NciI | CCSGG | 1 cut(s) | 2699 |
| NcoI | CCATGG | 2 cut(s) | 388, 2010 |
| NdeII | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| NlaIV | GGNNCC | 5 cut(s) | 394, 1186, 1822, 2373, 2413 |
| NmuCI | GTSAC | 1 cut(s) | 328 |
| NsiI | ATGCAT | 1 cut(s) | 673 |
| NspI | RCATGY | 1 cut(s) | 1213 |
| NspV | TTCGAA | 1 cut(s) | 1529 |
| PaeR7I | CTCGAG | 1 cut(s) | 834 |
| PagI | TCATGA | 4 cut(s) | 163, 310, 1267, 2179 |
| PaqCI | CACCTGC | 1 cut(s) | 68 |
| PceI | AGGCCT | 1 cut(s) | 2534 |
| PciI | ACATGT | 1 cut(s) | 1209 |
| PciSI | GCTCTTC | 1 cut(s) | 189 |
| PctI | GAATGC | 3 cut(s) | 673, 900, 1506 |
| PdmI | GAANNNNTTC | 2 cut(s) | 975, 2736 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 283, 1058 |
| PfoI | TCCNGGA | 1 cut(s) | 2464 |
| PkrI | GCNGC | 6 cut(s) | 266, 851, 1302, 1801, 2139, 2662 |
| PscI | ACATGT | 1 cut(s) | 1209 |
| PshBI | ATTAAT | 1 cut(s) | 189 |
| Psp124BI | GAGCTC | 1 cut(s) | 1634 |
| Psp6I | CCWGG | 3 cut(s) | 211, 253, 2464 |
| PspEI | GGTNACC | 1 cut(s) | 485 |
| PspFI | CCCAGC | 2 cut(s) | 116, 481 |
| PspGI | CCWGG | 3 cut(s) | 211, 253, 2464 |
| PspN4I | GGNNCC | 5 cut(s) | 394, 1186, 1822, 2373, 2413 |
| PspPI | GGNCC | 4 cut(s) | 559, 752, 1403, 1547 |
| PstI | CTGCAG | 2 cut(s) | 854, 1080 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2408, 2465 |
| PsuI | RGATCY | 6 cut(s) | 392, 503, 1159, 2371, 2411, 2502 |
| RsaI | GTAC | 4 cut(s) | 1186, 1554, 1833, 1936 |
| RsaNI | GTAC | 4 cut(s) | 1185, 1553, 1832, 1935 |
| RseI | CAYNNNNRTG | 3 cut(s) | 91, 1398, 2243 |
| SacI | GAGCTC | 1 cut(s) | 1634 |
| SapI | GCTCTTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 9 cut(s) | 189, 378, 818, 1149, 1287, 1376, 1494, 1521, 1902 |
| SatI | GCNGC | 6 cut(s) | 265, 850, 1301, 1800, 2138, 2661 |
| Sau3AI | GATC | 9 cut(s) | 298, 392, 503, 886, 1159, 1885, 2371, 2411, 2502 |
| Sau96I | GGNCC | 4 cut(s) | 559, 752, 1403, 1547 |
| ScaI | AGTACT | 1 cut(s) | 1936 |
| ScrFI | CCNGG | 4 cut(s) | 213, 255, 2466, 2699 |
| SduI | GDGCHC | 3 cut(s) | 157, 348, 1634 |
| SfaNI | GCATC | 2 cut(s) | 876, 2149 |
| SfcI | CTRYAG | 3 cut(s) | 850, 1076, 1746 |
| Sfr274I | CTCGAG | 1 cut(s) | 834 |
| SfuI | TTCGAA | 1 cut(s) | 1529 |
| SinI | GGWCC | 1 cut(s) | 1547 |
| SlaI | CTCGAG | 1 cut(s) | 834 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 91, 1398, 2243 |
| SmlI | CTYRAG | 3 cut(s) | 428, 834, 1295 |
| SmoI | CTYRAG | 3 cut(s) | 428, 834, 1295 |
| SseBI | AGGCCT | 1 cut(s) | 2534 |
| SsiI | CCGC | 1 cut(s) | 267 |
| SspI | AATATT | 1 cut(s) | 922 |
| SspMI | CTAG | 6 cut(s) | 476, 591, 698, 746, 864, 2090 |
| SstI | GAGCTC | 1 cut(s) | 1634 |
| StuI | AGGCCT | 1 cut(s) | 2534 |
| StyD4I | CCNGG | 4 cut(s) | 211, 253, 2464, 2697 |
| StyI | CCWWGG | 2 cut(s) | 388, 2010 |
| TaaI | ACNGT | 9 cut(s) | 245, 621, 913, 1103, 1283, 1655, 1747, 1954, 2629 |
| TaqI | TCGA | 5 cut(s) | 319, 835, 1247, 1529, 2538 |
| TatI | WGTACW | 1 cut(s) | 1934 |
| Tru1I | TTAA | 9 cut(s) | 189, 378, 818, 1149, 1287, 1376, 1494, 1521, 1902 |
| Tru9I | TTAA | 9 cut(s) | 189, 378, 818, 1149, 1287, 1376, 1494, 1521, 1902 |
| TscAI | CASTG | 8 cut(s) | 624, 1632, 1660, 1842, 1957, 1998, 2670, 2692 |
| TseFI | GTSAC | 1 cut(s) | 328 |
| TseI | GCWGC | 6 cut(s) | 264, 849, 1300, 1799, 2137, 2660 |
| Tsp45I | GTSAC | 1 cut(s) | 328 |
| TspGWI | ACGGA | 1 cut(s) | 1388 |
| TspRI | CASTG | 8 cut(s) | 624, 1632, 1660, 1842, 1957, 1998, 2670, 2692 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 283, 1058 |
| VpaK11BI | GGWCC | 1 cut(s) | 1547 |
| VspI | ATTAAT | 1 cut(s) | 189 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1419, 2583 |
| XapI | RAATTY | 9 cut(s) | 35, 415, 552, 684, 983, 1015, 1243, 1378, 1585 |
| XceI | RCATGY | 1 cut(s) | 1213 |
| XhoI | CTCGAG | 1 cut(s) | 834 |
| XmiI | GTMKAC | 1 cut(s) | 2444 |
| XmnI | GAANNNNTTC | 2 cut(s) | 975, 2736 |
| XspI | CTAG | 6 cut(s) | 476, 591, 698, 746, 864, 2090 |
| ZrmI | AGTACT | 1 cut(s) | 1936 |
| Zsp2I | ATGCAT | 1 cut(s) | 673 |