Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

64584331 .. 64588062

Gene Structure 3732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0514600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACCTTACAGGCTGGGTCTGGGGTTTCGACCTCTCAGGTTCTCGTTCTTGTTGGCGCAGGCTTGACGAGTTCGATCATTTTGAGGAATGGCCGTTTGTCTGATCTTCTTGCACAGCTTCAGGAGTTATGCAAGGGTGTAAATGAAGTTGAGATCTTGCCGGAGAAATTTGATAGCTCAATTCTTAGAGCTCAGATTCAACAATTGTCGGAAGAAATCAGGGAGTTAACCTTATCTTCTGGCCCCGTTACCATCTACAATGGGAATTCTGACTCTGGTGGGAGTTATGCCTCGTACTTAATTCCAGCTGCTGCACTTGGTGCTATGGGATATTGCTACATGAAGTGGAAGGGATGGTCATTTTCTGATGTAATGTATGTAACAAGGCATAATATGGCGAATGCTGTTGCAACTGTGTCAAAGCAATTAGAGACTGTGCATGAAACATTGGCTATTACAAGAAGACATCTGACCAAGAAGCTGGAAGAGTTGGATTGGAAGGTGGAGGAACAGAGGGAAACAACGCAGCTTATTGCAAATGGTGTGAATGAGGTGAAATCAAACCTTTCTCAAATTGGGTTTGATGTTGACGCGATTCATCAACTGGTCTCTGGGTTGGAAGGCAAGGTCGATCTTCTCGAGAGCAAACAGGATGTGACAAACTCAGGTCTATGGTACCTATGCCAAGTAGCTGAAGGCTCAAAAGATCGGCTGGAAACTAAAACAATTCAGGATGTCTCTGCTAAGCTAACAAAGCATTTAACATTCACATCTGAGGACAAATCACTCGAGGGCCTCCAATTCATTGCTGACACTAAAGAACCGAGCATGGTTGAGAAATCAATGACAAGCACGGAAACTACTAATCCCAGCAACTTCACTGGCCAAAAAGTTCCAGCCCTAAAAACAAGAATACACAGGTCGTATCCTGTTGGGATTTCTTTGTACCGGAACATAACGAGCTTGGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

324

Amino Acids

35.64

Weight (kDa)

5.62

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1664	PF07889	95 - 217	1.5e-45	Protein of unknown function (DUF1664)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	675
AccII	CGCG	1 cut(s)	593
AcoI	YGGCCR	2 cut(s)	91, 883
AcsI	RAATTY	2 cut(s)	167, 265
AcuI	CTGAAG	2 cut(s)	104, 714
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	296, 677, 947
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	9 cut(s)	118, 177, 191, 308, 481, 529, 692, 748, 963
AluI	AGCT	9 cut(s)	118, 177, 191, 308, 481, 529, 692, 748, 963
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	3 cut(s)	425, 613, 742
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	638, 788
AoxI	GGCC	4 cut(s)	91, 241, 793, 883
ApeKI	GCWGC	3 cut(s)	308, 311, 526
ApoI	RAATTY	2 cut(s)	167, 265
Asp718I	GGTACC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	242, 793
AsuHPI	GGTGA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	638, 788
BalI	TGGCCA	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	295, 298, 538
BccI	CCATC	2 cut(s)	260, 348
BceAI	ACGGC	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	936
BcoDI	GTCTC	3 cut(s)	425, 613, 742
BfuI	GTATCC	1 cut(s)	936
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	309, 312, 527
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	3 cut(s)	310, 313, 528
BmeT110I	CYCGRG	2 cut(s)	638, 788
BmgT120I	GGNCC	2 cut(s)	242, 793
BmiI	GGNNCC	2 cut(s)	244, 677
BpiI	GAAGAC	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	948
Bse1I	ACTGG	2 cut(s)	609, 886
Bse3DI	GCAATG	1 cut(s)	804
BseGI	GGATG	3 cut(s)	359, 658, 739
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	4 cut(s)	50, 206, 678, 765
BseNI	ACTGG	2 cut(s)	609, 886
BseXI	GCAGC	3 cut(s)	295, 298, 538
BseYI	CCCAGC	2 cut(s)	14, 869
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	4 cut(s)	93, 243, 795, 885
BshNI	GGYRCC	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	2 cut(s)	638, 788
BsiSI	CCGG	2 cut(s)	161, 949
BsmAI	GTCTC	3 cut(s)	425, 613, 742
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	93, 243, 795, 885
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	2 cut(s)	638, 788
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	5 cut(s)	75, 103, 153, 631, 706
Bsp1720I	GCTNAGC	1 cut(s)	744
BspANI	GGCC	4 cut(s)	93, 243, 795, 885
BspCNI	CTCAG	4 cut(s)	49, 205, 677, 766
BspFNI	CGCG	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	971
BspLI	GGNNCC	2 cut(s)	244, 677
BspT107I	GGYRCC	1 cut(s)	675
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	2 cut(s)	609, 886
BssMI	GATC	5 cut(s)	75, 103, 153, 631, 706
Bst4CI	ACNGT	2 cut(s)	415, 436
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	6 cut(s)	36, 185, 192, 664, 744, 774
BstF5I	GGATG	3 cut(s)	359, 658, 739
BstFNI	CGCG	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	5 cut(s)	78, 106, 156, 634, 709
BstMAI	GTCTC	3 cut(s)	425, 613, 742
BstMBI	GATC	5 cut(s)	75, 103, 153, 631, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 754
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	3 cut(s)	295, 298, 538
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	936
BsuRI	GGCC	4 cut(s)	93, 243, 795, 885
BtsCI	GGATG	3 cut(s)	359, 658, 739
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	971
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	242, 793
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	295, 676, 946
CviAII	CATG	4 cut(s)	340, 440, 829, 972
CviQI	GTAC	3 cut(s)	295, 676, 946
DdeI	CTNAG	6 cut(s)	36, 185, 192, 664, 744, 774
DpnI	GATC	5 cut(s)	77, 105, 155, 633, 708
DpnII	GATC	5 cut(s)	75, 103, 153, 631, 706
DraIII	CACNNNGTG	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	91, 883
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	104, 714
Eco88I	CYCGRG	2 cut(s)	638, 788
EcoICRI	GAGCTC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	4 cut(s)	343, 443, 832, 975
FatI	CATG	4 cut(s)	339, 439, 828, 971
Fnu4HI	GCNGC	3 cut(s)	309, 312, 527
FokI	GGATG	3 cut(s)	366, 665, 746
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	309, 312, 527
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	309, 312, 527
GsaI	CCCAGC	2 cut(s)	18, 873
HaeIII	GGCC	4 cut(s)	93, 243, 795, 885
HapII	CCGG	2 cut(s)	161, 949
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	343, 443, 832, 975
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	2 cut(s)	228, 589
HindII	GTYRAC	2 cut(s)	228, 589
HinfI	GANTC	4 cut(s)	196, 272, 595, 968
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	161, 949
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	228, 589
Hpy188I	TCNGA	7 cut(s)	103, 195, 211, 271, 367, 471, 775
Hpy188III	TCNNGA	5 cut(s)	122, 638, 640, 731, 972
Hpy8I	GTNNAC	2 cut(s)	228, 589
HpyAV	CCTTC	4 cut(s)	343, 493, 614, 689
HpyCH4III	ACNGT	2 cut(s)	415, 436
HpyCH4V	TGCA	6 cut(s)	113, 132, 314, 410, 439, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 754
HpyF3I	CTNAG	6 cut(s)	36, 185, 192, 664, 744, 774
Hsp92II	CATG	4 cut(s)	343, 443, 832, 975
HspAI	GCGC	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	75, 103, 153, 631, 706
Lsp1109I	GCAGC	3 cut(s)	295, 298, 538
MaeIII	GTNAC	3 cut(s)	247, 379, 655
MalI	GATC	5 cut(s)	77, 105, 155, 633, 708
MboI	GATC	5 cut(s)	75, 103, 153, 631, 706
MboII	GAAGA	6 cut(s)	98, 224, 228, 474, 497, 626
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	9 cut(s)	167, 180, 203, 265, 300, 425, 573, 726, 800
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	3 cut(s)	189, 471, 597
MnlI	CCTC	9 cut(s)	43, 78, 301, 499, 507, 544, 769, 784, 806
Mox20I	TGGCCA	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	3 cut(s)	227, 299, 761
Msp20I	TGGCCA	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	161, 949
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	320, 754
NdeII	GATC	5 cut(s)	75, 103, 153, 631, 706
NlaIII	CATG	4 cut(s)	343, 443, 832, 975
NlaIV	GGNNCC	2 cut(s)	244, 677
NmuCI	GTSAC	1 cut(s)	655
PaeR7I	CTCGAG	2 cut(s)	638, 788
PagI	TCATGA	1 cut(s)	971
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	196, 595, 968
PkrI	GCNGC	3 cut(s)	310, 313, 528
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	193
PspFI	CCCAGC	2 cut(s)	14, 869
PspN4I	GGNNCC	2 cut(s)	244, 677
PspPI	GGNCC	2 cut(s)	242, 793
PspXI	VCTCGAGB	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	296, 677, 947
RsaNI	GTAC	3 cut(s)	295, 676, 946
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	3 cut(s)	227, 299, 761
SatI	GCNGC	3 cut(s)	309, 312, 527
Sau3AI	GATC	5 cut(s)	75, 103, 153, 631, 706
Sau96I	GGNCC	2 cut(s)	242, 793
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	193
Sfr274I	CTCGAG	2 cut(s)	638, 788
SlaI	CTCGAG	2 cut(s)	638, 788
SmlI	CTYRAG	2 cut(s)	638, 788
SmoI	CTYRAG	2 cut(s)	638, 788
Sse9I	AATT	9 cut(s)	167, 180, 203, 265, 300, 425, 573, 726, 800
SstI	GAGCTC	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	415, 436
TaqI	TCGA	5 cut(s)	29, 74, 630, 639, 789
TasI	AATT	9 cut(s)	167, 180, 203, 265, 300, 425, 573, 726, 800
TfiI	GAWTC	3 cut(s)	196, 595, 968
Tru1I	TTAA	3 cut(s)	227, 299, 761
Tru9I	TTAA	3 cut(s)	227, 299, 761
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	308, 311, 526
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	6 cut(s)	159, 356, 456, 587, 793, 960
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	1 cut(s)	886
XapI	RAATTY	2 cut(s)	167, 265
XhoI	CTCGAG	2 cut(s)	638, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.