Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 744 |
| AciI | CCGC | 2 cut(s) | 68, 156 |
| AcoI | YGGCCR | 1 cut(s) | 625 |
| AcsI | RAATTY | 1 cut(s) | 620 |
| AcuI | CTGAAG | 2 cut(s) | 269, 363 |
| AfaI | GTAC | 3 cut(s) | 127, 217, 515 |
| AfeI | AGCGCT | 1 cut(s) | 111 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 62 |
| AflIII | ACRYGT | 1 cut(s) | 302 |
| AgsI | TTSAA | 5 cut(s) | 200, 387, 677, 709, 719 |
| AjnI | CCWGG | 4 cut(s) | 5, 347, 583, 653 |
| AluBI | AGCT | 4 cut(s) | 599, 613, 648, 684 |
| AluI | AGCT | 4 cut(s) | 599, 613, 648, 684 |
| Alw26I | GTCTC | 1 cut(s) | 510 |
| Aor51HI | AGCGCT | 1 cut(s) | 111 |
| AoxI | GGCC | 4 cut(s) | 11, 75, 292, 625 |
| ApeKI | GCWGC | 2 cut(s) | 425, 701 |
| ApoI | RAATTY | 1 cut(s) | 620 |
| AspLEI | GCGC | 2 cut(s) | 33, 112 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuC2I | CCSGG | 1 cut(s) | 455 |
| AsuHPI | GGTGA | 3 cut(s) | 50, 84, 275 |
| BbvI | GCAGC | 2 cut(s) | 412, 713 |
| BccI | CCATC | 2 cut(s) | 35, 551 |
| BceAI | ACGGC | 1 cut(s) | 612 |
| BciT130I | CCWGG | 4 cut(s) | 7, 349, 585, 655 |
| BciVI | GTATCC | 1 cut(s) | 331 |
| BcnI | CCSGG | 1 cut(s) | 455 |
| BcoDI | GTCTC | 1 cut(s) | 510 |
| BfaI | CTAG | 1 cut(s) | 27 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BfuI | GTATCC | 1 cut(s) | 331 |
| BglII | AGATCT | 1 cut(s) | 737 |
| BisI | GCNGC | 2 cut(s) | 426, 702 |
| BlsI | GCNGC | 2 cut(s) | 427, 703 |
| Bme1390I | CCNGG | 5 cut(s) | 7, 349, 455, 585, 655 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 1 cut(s) | 360 |
| BmrFI | CCNGG | 5 cut(s) | 7, 349, 455, 585, 655 |
| BmsI | GCATC | 2 cut(s) | 60, 478 |
| BpuMI | CCSGG | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 1 cut(s) | 348 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 62 |
| Bse1I | ACTGG | 1 cut(s) | 14 |
| BseBI | CCWGG | 4 cut(s) | 7, 349, 585, 655 |
| BseDI | CCNNGG | 1 cut(s) | 348 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 62 |
| BseNI | ACTGG | 1 cut(s) | 14 |
| BseRI | GAGGAG | 1 cut(s) | 347 |
| BseXI | GCAGC | 2 cut(s) | 412, 713 |
| BsgI | GTGCAG | 1 cut(s) | 92 |
| BshFI | GGCC | 4 cut(s) | 13, 77, 294, 627 |
| BsiSI | CCGG | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 62 |
| BsmAI | GTCTC | 1 cut(s) | 510 |
| BsnI | GGCC | 4 cut(s) | 13, 77, 294, 627 |
| Bsp1407I | TGTACA | 1 cut(s) | 215 |
| Bsp143I | GATC | 1 cut(s) | 737 |
| BspACI | CCGC | 2 cut(s) | 68, 156 |
| BspANI | GGCC | 4 cut(s) | 13, 77, 294, 627 |
| BspLI | GGNNCC | 1 cut(s) | 360 |
| BsrGI | TGTACA | 1 cut(s) | 215 |
| BsrI | ACTGG | 1 cut(s) | 14 |
| BssECI | CCNNGG | 1 cut(s) | 348 |
| BssMI | GATC | 1 cut(s) | 737 |
| Bst2UI | CCWGG | 4 cut(s) | 7, 349, 585, 655 |
| Bst4CI | ACNGT | 1 cut(s) | 102 |
| Bst6I | CTCTTC | 2 cut(s) | 534, 684 |
| BstAUI | TGTACA | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 5 cut(s) | 75, 85, 172, 272, 423 |
| BstDEI | CTNAG | 1 cut(s) | 685 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 2 cut(s) | 33, 112 |
| BstKTI | GATC | 1 cut(s) | 740 |
| BstMAI | GTCTC | 1 cut(s) | 510 |
| BstMBI | GATC | 1 cut(s) | 737 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 605 |
| BstNI | CCWGG | 4 cut(s) | 7, 349, 585, 655 |
| BstNSI | RCATGY | 2 cut(s) | 274, 290 |
| BstSCI | CCNGG | 5 cut(s) | 5, 347, 453, 583, 653 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstV1I | GCAGC | 2 cut(s) | 412, 713 |
| BstX2I | RGATCY | 1 cut(s) | 737 |
| BstYI | RGATCY | 1 cut(s) | 737 |
| BsuI | GTATCC | 1 cut(s) | 331 |
| BsuRI | GGCC | 4 cut(s) | 13, 77, 294, 627 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 1 cut(s) | 315 |
| Cac8I | GCNNGC | 5 cut(s) | 75, 85, 172, 272, 423 |
| CfoI | GCGC | 2 cut(s) | 33, 112 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| Csp6I | GTAC | 3 cut(s) | 126, 216, 514 |
| CviAII | CATG | 2 cut(s) | 271, 287 |
| CviQI | GTAC | 3 cut(s) | 126, 216, 514 |
| DdeI | CTNAG | 1 cut(s) | 685 |
| DpnI | GATC | 1 cut(s) | 739 |
| DpnII | GATC | 1 cut(s) | 737 |
| EaeI | YGGCCR | 1 cut(s) | 625 |
| Eam1104I | CTCTTC | 2 cut(s) | 534, 684 |
| EarI | CTCTTC | 2 cut(s) | 534, 684 |
| Eco47III | AGCGCT | 1 cut(s) | 111 |
| Eco57I | CTGAAG | 2 cut(s) | 269, 363 |
| EcoO109I | RGGNCCY | 1 cut(s) | 293 |
| EcoRII | CCWGG | 4 cut(s) | 5, 347, 583, 653 |
| EcoT22I | ATGCAT | 2 cut(s) | 276, 493 |
| FaeI | CATG | 2 cut(s) | 274, 290 |
| FatI | CATG | 2 cut(s) | 270, 286 |
| FauI | CCCGC | 1 cut(s) | 149 |
| FauNDI | CATATG | 3 cut(s) | 220, 259, 364 |
| Fnu4HI | GCNGC | 2 cut(s) | 426, 702 |
| FokI | GGATG | 1 cut(s) | 38 |
| Fsp4HI | GCNGC | 2 cut(s) | 426, 702 |
| FspBI | CTAG | 1 cut(s) | 27 |
| GlaI | GCGC | 2 cut(s) | 32, 111 |
| GluI | GCNGC | 2 cut(s) | 426, 702 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HaeIII | GGCC | 4 cut(s) | 13, 77, 294, 627 |
| HapII | CCGG | 1 cut(s) | 454 |
| HhaI | GCGC | 2 cut(s) | 33, 112 |
| Hin1II | CATG | 2 cut(s) | 274, 290 |
| Hin6I | GCGC | 2 cut(s) | 31, 110 |
| HinP1I | GCGC | 2 cut(s) | 31, 110 |
| HincII | GTYRAC | 1 cut(s) | 590 |
| HindII | GTYRAC | 1 cut(s) | 590 |
| HindIII | AAGCTT | 1 cut(s) | 682 |
| HinfI | GANTC | 2 cut(s) | 383, 397 |
| HpaII | CCGG | 1 cut(s) | 454 |
| HphI | GGTGA | 3 cut(s) | 50, 84, 275 |
| Hpy166II | GTNNAC | 1 cut(s) | 590 |
| Hpy188I | TCNGA | 2 cut(s) | 231, 487 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 1 cut(s) | 590 |
| HpyAV | CCTTC | 3 cut(s) | 33, 194, 247 |
| HpyCH4III | ACNGT | 1 cut(s) | 102 |
| HpyCH4IV | ACGT | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 6 cut(s) | 73, 274, 286, 393, 491, 608 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 605 |
| HpyF3I | CTNAG | 1 cut(s) | 685 |
| HpySE526I | ACGT | 1 cut(s) | 302 |
| Hsp92II | CATG | 2 cut(s) | 274, 290 |
| HspAI | GCGC | 2 cut(s) | 31, 110 |
| Kzo9I | GATC | 1 cut(s) | 737 |
| LmnI | GCTCC | 1 cut(s) | 167 |
| Lsp1109I | GCAGC | 2 cut(s) | 412, 713 |
| LweI | GCATC | 2 cut(s) | 60, 478 |
| MaeI | CTAG | 1 cut(s) | 27 |
| MaeII | ACGT | 1 cut(s) | 302 |
| MalI | GATC | 1 cut(s) | 739 |
| MboI | GATC | 1 cut(s) | 737 |
| MboII | GAAGA | 6 cut(s) | 125, 262, 386, 521, 701, 721 |
| MflI | RGATCY | 1 cut(s) | 737 |
| MluCI | AATT | 5 cut(s) | 129, 320, 388, 620, 638 |
| MlyI | GAGTC | 1 cut(s) | 406 |
| MnlI | CCTC | 6 cut(s) | 3, 175, 325, 328, 453, 527 |
| Mph1103I | ATGCAT | 2 cut(s) | 276, 493 |
| MseI | TTAA | 3 cut(s) | 192, 326, 731 |
| MspI | CCGG | 1 cut(s) | 454 |
| MspR9I | CCNGG | 5 cut(s) | 7, 349, 455, 585, 655 |
| MvaI | CCWGG | 4 cut(s) | 7, 349, 585, 655 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 605 |
| NciI | CCSGG | 1 cut(s) | 455 |
| NdeI | CATATG | 3 cut(s) | 220, 259, 364 |
| NdeII | GATC | 1 cut(s) | 737 |
| NlaIII | CATG | 2 cut(s) | 274, 290 |
| NlaIV | GGNNCC | 1 cut(s) | 360 |
| NsiI | ATGCAT | 2 cut(s) | 276, 493 |
| NspI | RCATGY | 2 cut(s) | 274, 290 |
| PaeI | GCATGC | 1 cut(s) | 274 |
| PfeI | GAWTC | 1 cut(s) | 383 |
| PfoI | TCCNGGA | 1 cut(s) | 5 |
| PkrI | GCNGC | 2 cut(s) | 427, 703 |
| PleI | GAGTC | 1 cut(s) | 405 |
| PpsI | GAGTC | 1 cut(s) | 405 |
| PsiI | TTATAA | 1 cut(s) | 744 |
| Psp6I | CCWGG | 4 cut(s) | 5, 347, 583, 653 |
| PspGI | CCWGG | 4 cut(s) | 5, 347, 583, 653 |
| PspN4I | GGNNCC | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PsuI | RGATCY | 1 cut(s) | 737 |
| RsaI | GTAC | 3 cut(s) | 127, 217, 515 |
| RsaNI | GTAC | 3 cut(s) | 126, 216, 514 |
| SaqAI | TTAA | 3 cut(s) | 192, 326, 731 |
| SatI | GCNGC | 2 cut(s) | 426, 702 |
| Sau3AI | GATC | 1 cut(s) | 737 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| SchI | GAGTC | 1 cut(s) | 406 |
| ScrFI | CCNGG | 5 cut(s) | 7, 349, 455, 585, 655 |
| SfaNI | GCATC | 2 cut(s) | 60, 478 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| SphI | GCATGC | 1 cut(s) | 274 |
| Sse9I | AATT | 5 cut(s) | 129, 320, 388, 620, 638 |
| SsiI | CCGC | 2 cut(s) | 68, 156 |
| SspMI | CTAG | 1 cut(s) | 27 |
| StyD4I | CCNGG | 5 cut(s) | 5, 347, 453, 583, 653 |
| TaaI | ACNGT | 1 cut(s) | 102 |
| TaiI | ACGT | 1 cut(s) | 305 |
| TasI | AATT | 5 cut(s) | 129, 320, 388, 620, 638 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TfiI | GAWTC | 1 cut(s) | 383 |
| Tru1I | TTAA | 3 cut(s) | 192, 326, 731 |
| Tru9I | TTAA | 3 cut(s) | 192, 326, 731 |
| TscAI | CASTG | 1 cut(s) | 315 |
| TseI | GCWGC | 2 cut(s) | 425, 701 |
| TspDTI | ATGAA | 3 cut(s) | 237, 711, 717 |
| TspRI | CASTG | 1 cut(s) | 315 |
| XapI | RAATTY | 1 cut(s) | 620 |
| XceI | RCATGY | 2 cut(s) | 274, 290 |
| XspI | CTAG | 1 cut(s) | 27 |
| Zsp2I | ATGCAT | 2 cut(s) | 276, 493 |