Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

25837125 .. 25845301

Gene Structure 8177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCAAACAGATTCACGGAGAGGGAGAGAAAGGGCAAGGCAGTTGCTCCTCAATTTCCCCCTAATCAAAGTAGCAGCAGTACTGGGACTAATGCTTCACATCCCCTTGTAGCCAACCCTAGGAGGTATGACCCTTCAGGGTATTTGATAAGGAGGACCATAAGTTCATCATTACTAATAGGCGATTCTTCGACAGAAGTTCATCAGCATCATGACGAACCCAGAAGCACCATCAACCCACGAGGAAAAGAGAAAGAACTCCACACCTTTTCACTCTCCAACACTAATATTCCTACACCAGTTCAGCCGAATATCGTGTTTGGTTATTTTCCTGCGCAACCAAACCAAAGGTTCATGGTTGGCGCAGCTAGTACTACTACTTCCTCACTGCCACCACATCCCGGCCATGGAATCTTGGGCTGCAAGCCAATAGGATATCAACATGCATCACTTGGAGAAGTCAACAACCGACCAGCTATGTATAATATCCCAAATTCTCGTAATGGATATCAACATGCATCACTTGGAGAAGTCAACAAGCAACCGTCTCATAACAACATCCCAAATTCTCAAGATGGATATCAACATGCATCACTTGAAGAAGTCAACATGCGACCATCTCACAAGGTCTCCAATTGTCATATGGGAAAGGTAGTAAACAACCAAGCTAAGGCAAAATCATCCACAAGCACAAGTGTGGAGTTTCTTCCGGGGAGGTTTCCTACGGCACCCCAGATACAATCACAAAGAGAAAGAGATTATCAACGTGAGAATCTGGTGGCGGTAAATCAACAACAACAAGGCTGGACTAAACTATACACCTTATTTCCTCCTTCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCAGGATTTTGGTGGCCAGGGGAAGTTCAGATCAGATGACCCTGACAATCCTTACTACCCCTTACCAGCACATTTCATCAACATGGATGACTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

323

Amino Acids

35.74

Weight (kDa)

9.28

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	727
AciI	CCGC	1 cut(s)	782
AcoI	YGGCCR	2 cut(s)	403, 886
AcsI	RAATTY	2 cut(s)	493, 565
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	82, 373
AfiI	CCNNNNNNNGG	4 cut(s)	120, 401, 407, 670
AgsI	TTSAA	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	888
AleI	CACNNNNGTG	1 cut(s)	695
AloI	GAACNNNNNNTCC	2 cut(s)	148, 180
AluBI	AGCT	3 cut(s)	368, 476, 668
AluI	AGCT	3 cut(s)	368, 476, 668
Alw26I	GTCTC	2 cut(s)	552, 634
AoxI	GGCC	2 cut(s)	403, 886
ApeKI	GCWGC	3 cut(s)	75, 365, 420
ApoI	RAATTY	2 cut(s)	493, 565
AspA2I	CCTAGG	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	337, 365
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	2 cut(s)	402, 711
AvaII	GGWCC	1 cut(s)	156
AvrII	CCTAGG	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	873
BalI	TGGCCA	1 cut(s)	888
BanI	GGYRCC	1 cut(s)	727
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BauI	CACGAG	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	87, 377, 407
BccI	CCATC	3 cut(s)	239, 569, 625
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	1 cut(s)	890
BcnI	CCSGG	2 cut(s)	402, 711
BcoDI	GTCTC	2 cut(s)	552, 634
BfaI	CTAG	2 cut(s)	120, 369
BisI	GCNGC	3 cut(s)	76, 366, 421
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	3 cut(s)	77, 367, 422
BmcAI	AGTACT	2 cut(s)	82, 373
Bme1390I	CCNGG	3 cut(s)	402, 711, 890
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	3 cut(s)	402, 711, 890
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	4 cut(s)	217, 455, 527, 599
BmuI	ACTGGG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	402, 711
BsaBI	GATNNNNATC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	119, 406, 710, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 401, 407, 670
Bse1I	ACTGG	2 cut(s)	88, 299
Bse21I	CCTNAGG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	890
BseDI	CCNNGG	4 cut(s)	119, 406, 710, 889
BseGI	GGATG	5 cut(s)	100, 397, 558, 680, 964
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	120, 401, 407, 670
BseMII	CTCAG	1 cut(s)	887
BseNI	ACTGG	2 cut(s)	88, 299
BseXI	GCAGC	3 cut(s)	87, 377, 407
BshFI	GGCC	2 cut(s)	405, 888
BshNI	GGYRCC	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	402, 710
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	120, 401, 407, 670
BsmAI	GTCTC	2 cut(s)	552, 634
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	405, 888
Bso31I	GGTCTC	1 cut(s)	634
Bsp143I	GATC	1 cut(s)	902
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	782
BspANI	GGCC	2 cut(s)	405, 888
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	88, 299
BssECI	CCNNGG	4 cut(s)	119, 406, 710, 889
BssMI	GATC	1 cut(s)	902
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	119, 406
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	669, 873
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	5 cut(s)	100, 397, 558, 680, 964
BstHHI	GCGC	2 cut(s)	337, 365
BstKTI	GATC	1 cut(s)	905
BstMAI	GTCTC	2 cut(s)	552, 634
BstMBI	GATC	1 cut(s)	902
BstNI	CCWGG	1 cut(s)	890
BstNSI	RCATGY	4 cut(s)	446, 518, 590, 613
BstSCI	CCNGG	3 cut(s)	400, 709, 888
BstV1I	GCAGC	3 cut(s)	87, 377, 407
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	405, 888
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	5 cut(s)	100, 397, 558, 680, 964
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	337, 365
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	81, 372
CviAII	CATG	8 cut(s)	212, 355, 407, 443, 515, 587, 610, 955
CviQI	GTAC	2 cut(s)	81, 372
DdeI	CTNAG	2 cut(s)	669, 873
DpnI	GATC	1 cut(s)	904
DpnII	GATC	1 cut(s)	902
EaeI	YGGCCR	2 cut(s)	403, 886
Eco130I	CCWWGG	2 cut(s)	119, 406
Eco31I	GGTCTC	1 cut(s)	634
Eco32I	GATATC	3 cut(s)	437, 509, 581
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	873
EcoRII	CCWGG	1 cut(s)	888
EcoRV	GATATC	3 cut(s)	437, 509, 581
EcoT14I	CCWWGG	2 cut(s)	119, 406
EcoT22I	ATGCAT	3 cut(s)	448, 520, 592
ErhI	CCWWGG	2 cut(s)	119, 406
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	8 cut(s)	215, 358, 410, 446, 518, 590, 613, 958
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	8 cut(s)	211, 354, 406, 442, 514, 586, 609, 954
FauNDI	CATATG	1 cut(s)	642
Fnu4HI	GCNGC	3 cut(s)	76, 366, 421
FokI	GGATG	4 cut(s)	87, 384, 545, 667
Fsp4HI	GCNGC	3 cut(s)	76, 366, 421
FspBI	CTAG	2 cut(s)	120, 369
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	2 cut(s)	336, 364
GluI	GCNGC	3 cut(s)	76, 366, 421
HaeIII	GGCC	2 cut(s)	405, 888
HapII	CCGG	2 cut(s)	402, 710
HhaI	GCGC	2 cut(s)	337, 365
Hin1II	CATG	8 cut(s)	215, 358, 410, 446, 518, 590, 613, 958
Hin6I	GCGC	2 cut(s)	335, 363
HinP1I	GCGC	2 cut(s)	335, 363
HincII	GTYRAC	3 cut(s)	463, 535, 607
HindII	GTYRAC	3 cut(s)	463, 535, 607
HinfI	GANTC	4 cut(s)	12, 185, 411, 772
HpaII	CCGG	2 cut(s)	402, 710
Hpy166II	GTNNAC	4 cut(s)	463, 535, 607, 658
Hpy188I	TCNGA	2 cut(s)	902, 907
Hpy188III	TCNNGA	3 cut(s)	212, 572, 875
Hpy8I	GTNNAC	4 cut(s)	463, 535, 607, 658
HpyAV	CCTTC	2 cut(s)	144, 843
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	4 cut(s)	423, 446, 518, 590
HpyF3I	CTNAG	2 cut(s)	669, 873
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	8 cut(s)	215, 358, 410, 446, 518, 590, 613, 958
HspAI	GCGC	2 cut(s)	335, 363
Kzo9I	GATC	1 cut(s)	902
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	87, 377, 407
LweI	GCATC	4 cut(s)	217, 455, 527, 599
MaeI	CTAG	2 cut(s)	120, 369
MaeII	ACGT	1 cut(s)	766
MalI	GATC	1 cut(s)	904
MboI	GATC	1 cut(s)	902
MboII	GAAGA	3 cut(s)	180, 611, 698
MfeI	CAATTG	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	888
MluCI	AATT	4 cut(s)	53, 493, 565, 634
MluNI	TGGCCA	1 cut(s)	888
MmeI	TCCRAC	1 cut(s)	303
Mox20I	TGGCCA	1 cut(s)	888
Mph1103I	ATGCAT	3 cut(s)	448, 520, 592
MscI	TGGCCA	1 cut(s)	888
MslI	CAYNNNNRTG	2 cut(s)	695, 953
Msp20I	TGGCCA	1 cut(s)	888
MspI	CCGG	2 cut(s)	402, 710
MspR9I	CCNGG	3 cut(s)	402, 711, 890
MunI	CAATTG	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	890
NciI	CCSGG	2 cut(s)	402, 711
NcoI	CCATGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	1 cut(s)	902
NlaIII	CATG	8 cut(s)	215, 358, 410, 446, 518, 590, 613, 958
NlaIV	GGNNCC	1 cut(s)	729
NsbI	TGCGCA	1 cut(s)	336
NsiI	ATGCAT	3 cut(s)	448, 520, 592
NspI	RCATGY	4 cut(s)	446, 518, 590, 613
OliI	CACNNNNGTG	1 cut(s)	695
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	4 cut(s)	12, 185, 411, 772
PkrI	GCNGC	3 cut(s)	77, 367, 422
Psp6I	CCWGG	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	82, 373
RsaNI	GTAC	2 cut(s)	81, 372
RseI	CAYNNNNRTG	2 cut(s)	695, 953
SatI	GCNGC	3 cut(s)	76, 366, 421
Sau3AI	GATC	1 cut(s)	902
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	2 cut(s)	82, 373
ScrFI	CCNGG	3 cut(s)	402, 711, 890
SfaNI	GCATC	4 cut(s)	217, 455, 527, 599
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	695, 953
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	4 cut(s)	53, 493, 565, 634
SsiI	CCGC	1 cut(s)	782
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	120, 369
StyD4I	CCNGG	3 cut(s)	400, 709, 888
StyI	CCWWGG	2 cut(s)	119, 406
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	53, 493, 565, 634
TatI	WGTACW	2 cut(s)	80, 371
TfiI	GAWTC	4 cut(s)	12, 185, 411, 772
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	3 cut(s)	75, 365, 420
TspDTI	ATGAA	4 cut(s)	156, 191, 343, 937
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	493, 565
XceI	RCATGY	4 cut(s)	446, 518, 590, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XmaJI	CCTAGG	1 cut(s)	119
XspI	CTAG	2 cut(s)	120, 369
ZrmI	AGTACT	2 cut(s)	82, 373
Zsp2I	ATGCAT	3 cut(s)	448, 520, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.