Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

74916058 .. 74921012

Gene Structure 4955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0559600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGATTCTCAGGTCTTGGTGGCTCTCGTACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCTCTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACTTATGGTTTTTTGCTGGTGTGTTATTCTTTGCTGTAATTGCCAATTTTATTCCGGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGAGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACAGCAATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGCCTCCGTGTTGGTGTCAATTTGGCTTTGGCTATTGCCTTGCACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGCAAATGGCAGGCGTTCCAATTGGCGACACTTTCTGGTCTTGCTGAACCTTTGGGTGTTATAATTGTAGCCTATCTATTCCCGAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTAGGAGCAGTTGGCGGAGTGATGGCTTTTTTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGCCTATACTTCCTTGAAATCAGCCTACCTGCGGAAATGAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

276

Amino Acids

29.18

Weight (kDa)

6.51

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	99 - 261	1.5e-22	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
Acc36I	ACCTGC	2 cut(s)	125, 820
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	525
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	3 cut(s)	312, 672, 815
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	30, 55
AfiI	CCNNNNNNNGG	3 cut(s)	166, 213, 814
AgsI	TTSAA	5 cut(s)	103, 340, 634, 650, 800
AluBI	AGCT	3 cut(s)	630, 743, 825
AluI	AGCT	3 cut(s)	630, 743, 825
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	2 cut(s)	445, 652
ApeKI	GCWGC	3 cut(s)	131, 627, 706
ApoI	RAATTY	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	622
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	118, 639, 693
BccI	CCATC	2 cut(s)	277, 673
BceAI	ACGGC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	282, 659
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	2 cut(s)	125, 820
BisI	GCNGC	3 cut(s)	132, 628, 707
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	133, 629, 708
BmcAI	AGTACT	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	93, 267
BmsI	GCATC	4 cut(s)	96, 132, 355, 693
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	430, 711
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 213, 814
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	430, 711
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	166, 213, 814
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	118, 639, 693
BshFI	GGCC	2 cut(s)	447, 654
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	166, 213, 814
BsnI	GGCC	2 cut(s)	447, 654
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	434
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	312, 672, 815
BspANI	GGCC	2 cut(s)	447, 654
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	93, 267
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	2 cut(s)	125, 820
BspPI	GGATC	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	430, 711
BssMI	GATC	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	430, 711
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	552, 741, 784
BstDEI	CTNAG	2 cut(s)	9, 146
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	118, 639, 693
BsuRI	GGCC	2 cut(s)	447, 654
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	373, 429
BveI	ACCTGC	2 cut(s)	125, 820
Cac8I	GCNNGC	3 cut(s)	552, 741, 784
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	29, 54
CviAII	CATG	2 cut(s)	698, 775
CviQI	GTAC	2 cut(s)	29, 54
DdeI	CTNAG	2 cut(s)	9, 146
DpnI	GATC	1 cut(s)	436
DpnII	GATC	1 cut(s)	434
DraI	TTTAAA	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	687
Eco130I	CCWWGG	2 cut(s)	430, 711
Eco147I	AGGCCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	430, 711
ErhI	CCWWGG	2 cut(s)	430, 711
FaeI	CATG	2 cut(s)	701, 778
FaiI	YATR	9 cut(s)	152, 182, 214, 392, 602, 699, 726, 776, 790
FatI	CATG	2 cut(s)	697, 774
FauI	CCCGC	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	132, 628, 707
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	132, 628, 707
FspBI	CTAG	2 cut(s)	282, 659
GluI	GCNGC	3 cut(s)	132, 628, 707
HaeIII	GGCC	2 cut(s)	447, 654
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	701, 778
HinfI	GANTC	2 cut(s)	5, 634
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	141, 289
Hpy188III	TCNNGA	5 cut(s)	263, 410, 622, 638, 647
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	5 cut(s)	314, 407, 436, 644, 665
HpyCH4V	TGCA	8 cut(s)	134, 400, 487, 515, 533, 697, 728, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
HpyF3I	CTNAG	2 cut(s)	9, 146
Hsp92II	CATG	2 cut(s)	701, 778
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	97, 283, 662
Lsp1109I	GCAGC	3 cut(s)	118, 639, 693
LweI	GCATC	4 cut(s)	96, 132, 355, 693
MaeI	CTAG	2 cut(s)	282, 659
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	436
MboI	GATC	1 cut(s)	434
MboII	GAAGA	2 cut(s)	115, 352
MfeI	CAATTG	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
MnlI	CCTC	4 cut(s)	82, 317, 458, 493
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	200, 689
MspI	CCGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
NdeII	GATC	1 cut(s)	434
NlaIII	CATG	2 cut(s)	701, 778
NlaIV	GGNNCC	2 cut(s)	93, 267
PceI	AGGCCT	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	5, 634
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	133, 629, 708
PsiI	TTATAA	1 cut(s)	602
PspN4I	GGNNCC	2 cut(s)	93, 267
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	30, 55
RsaNI	GTAC	2 cut(s)	29, 54
SaqAI	TTAA	2 cut(s)	200, 689
SatI	GCNGC	3 cut(s)	132, 628, 707
Sau3AI	GATC	1 cut(s)	434
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	15, 139, 592, 632, 745, 814, 827
SfaNI	GCATC	4 cut(s)	96, 132, 355, 693
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	3 cut(s)	312, 672, 815
SspMI	CTAG	2 cut(s)	282, 659
StuI	AGGCCT	1 cut(s)	654
StyI	CCWWGG	2 cut(s)	430, 711
TasI	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	5, 634
Tru1I	TTAA	2 cut(s)	200, 689
Tru9I	TTAA	2 cut(s)	200, 689
TscAI	CASTG	2 cut(s)	373, 429
TseI	GCWGC	3 cut(s)	131, 627, 706
TspDTI	ATGAA	3 cut(s)	333, 455, 763
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	373, 429
Van91I	CCANNNNNTGG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	642
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	2 cut(s)	282, 659
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.