Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

68042682 .. 68047349

Gene Structure 4668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0498600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAACCCACTAACCCTAGTGAAGCGGATTCAGAACATCAATGCGAGAGAAGCTCAATTAGGGATTTCAGAGGACGCTTCATGGCACGCCAAGTACAAAGACTCCGCTTACGTTTACGCCGGCGGCATTCCCTTTGATCTCACCGAAGGCGATCTCCTCGCCATCTTCGCACAGTACGGAGAGGTCGTCGATGTCAACCTCGTTCGCGATAAAGGGACCGGGAAATCCAAAGGGTTCGCCTTTGTTGCGTATGAGGACCAGAGGAGTACCAATCTCGCTGTGGATAATTTGAACGGAGCCCAAGTGGTGGGTCGGACTATTAGGGTTGATCATGTGGATAAGTACAAGAAGAAAGAAGAGGAAGATGAAGAGGAGGAGCAGAGGAAGAGGGAGGAGCGAGGTGTTTGCCGTGCTTTCCAGAGAGGTGAATGTACTCGTGGAGCTGGATGTAGATTTTCTCACAATGAACAGAGAGCTGCAAACACAGGGTGGGGTGCTGAGGACAAGAAATGGGGACACGATAACTATGATGGTCCGAGAAAGAGTGACAAAAGACCTGGCACCATCCCCTCAAATCGTGTTCCAGAGCCTAGAGTGCGAGAAGATTTCAGCACTAAAGATAAGTTCAAGACAGTACCGGACAGGAGGGCCTTGGAGGAAGAAAAGAGGACATCAAGAAGACGTGGTGAGGATGATGAGTTGGAGCCAAGATCAAGAGAAGATTATGATAGGAGGGAAGAAAAGAGACCAAGAAGACATGATGATTATGAATTTCAGCCGAAGGCAAGAGAACATCATGATAGAAGGGAAGATAGGAGACCCAGAAGGCAAGGCGACGATGAATTTGAACCAAAGCTAAAGTCTGTAGAAGATAAGAGACTCAGAAGGCGTGGTGATGATGCTGCATATGAGCCCAAGTCTAGAGAAGATCATGTCAGGAGTGAATATGATAGAAGAGAAGATAGGAGACCAAAAAGACGTGATGATGATTTGGAAGCTCATGACATAAGGGAAGATCGTGATAGGATGGAAGAAAAGAGATCAAGGCGACCCAATCATGACGAATTAGAGCCACAGCCACGAGCAAGTCGGGATAGGAGGGAAGGAGAGAGATTGAGAAGGCATCATGATGATGAAGTGCCTCCAAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

384

Amino Acids

45.64

Weight (kDa)

7.75

Isoelectric Point (pI)

70.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	38 - 108	6.3e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	25, 105, 123
AcsI	RAATTY	2 cut(s)	770, 842
AdeI	CACNNNGTG	1 cut(s)	489
AfaI	GTAC	6 cut(s)	95, 176, 268, 344, 433, 636
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	292, 628, 848
AjiI	CACGTC	2 cut(s)	683, 980
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	5 cut(s)	53, 443, 476, 856, 998
AluI	AGCT	5 cut(s)	53, 443, 476, 856, 998
Alw26I	GTCTC	4 cut(s)	739, 811, 871, 961
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	2 cut(s)	476, 902
ApoI	RAATTY	2 cut(s)	770, 842
ArsI	GACNNNNNNTTYG	4 cut(s)	827, 845, 859, 877
AspS9I	GGNCC	4 cut(s)	216, 256, 533, 648
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	4 cut(s)	133, 437, 698, 905
AvaII	GGWCC	3 cut(s)	216, 256, 533
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	301, 915
BauI	CACGAG	2 cut(s)	435, 1080
BbsI	GAAGAC	2 cut(s)	685, 760
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	463, 889
BccI	CCATC	4 cut(s)	170, 524, 572, 1021
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	739, 811, 871, 961
BfaI	CTAG	3 cut(s)	17, 591, 921
BfmI	CTRYAG	1 cut(s)	864
BisI	GCNGC	3 cut(s)	124, 477, 903
BlsI	GCNGC	3 cut(s)	125, 478, 904
Bme1390I	CCNGG	2 cut(s)	220, 558
Bme18I	GGWCC	3 cut(s)	216, 256, 533
BmgBI	CACGTC	2 cut(s)	683, 980
BmgT120I	GGNCC	4 cut(s)	216, 256, 533, 648
BmiI	GGNNCC	4 cut(s)	217, 298, 562, 705
BmrFI	CCNGG	2 cut(s)	220, 558
BmsI	GCATC	2 cut(s)	889, 1132
BpiI	GAAGAC	2 cut(s)	685, 760
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu10I	CCTNAGC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	3 cut(s)	739, 811, 961
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 171, 201, 288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	4 cut(s)	452, 564, 697, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	489, 895
BseRI	GAGGAG	5 cut(s)	146, 277, 386, 389, 407
BseXI	GCAGC	2 cut(s)	463, 889
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	120, 219, 638
BslFI	GGGAC	2 cut(s)	229, 528
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	4 cut(s)	739, 811, 871, 961
BsmFI	GGGAC	2 cut(s)	229, 528
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	650
Bso31I	GGTCTC	3 cut(s)	739, 811, 961
Bsp1286I	GDGCHC	2 cut(s)	301, 915
Bsp143I	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	3 cut(s)	25, 105, 123
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	2 cut(s)	490, 894
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
BspLI	GGNNCC	4 cut(s)	217, 298, 562, 705
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	3 cut(s)	739, 811, 961
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
BssSI	CACGAG	2 cut(s)	435, 1080
BssT1I	CCWWGG	1 cut(s)	651
Bst2BI	CACGAG	2 cut(s)	435, 1080
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	174, 634
Bst6I	CTCTTC	4 cut(s)	351, 363, 380, 949
BstC8I	GCNNGC	2 cut(s)	87, 121
BstDEI	CTNAG	2 cut(s)	498, 881
BstF5I	GGATG	4 cut(s)	452, 564, 697, 1032
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	7 cut(s)	139, 154, 331, 713, 931, 1018, 1043
BstMAI	GTCTC	4 cut(s)	739, 811, 871, 961
BstMBI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	218, 556
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	463, 889
BstV2I	GAAGAC	2 cut(s)	685, 760
BsuRI	GGCC	1 cut(s)	650
BtrI	CACGTC	2 cut(s)	683, 980
BtsCI	GGATG	4 cut(s)	452, 564, 697, 1032
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	87, 121
CciI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	216, 256, 533, 648
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
CviAII	CATG	8 cut(s)	81, 332, 758, 797, 932, 1001, 1058, 1127
CviQI	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
DdeI	CTNAG	2 cut(s)	498, 881
DpnI	GATC	7 cut(s)	138, 153, 330, 712, 930, 1017, 1042
DpnII	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
DraIII	CACNNNGTG	1 cut(s)	489
Eam1104I	CTCTTC	4 cut(s)	351, 363, 380, 949
EarI	CTCTTC	4 cut(s)	351, 363, 380, 949
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	301, 915
Eco31I	GGTCTC	3 cut(s)	739, 811, 961
Eco47I	GGWCC	3 cut(s)	216, 256, 533
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	301, 915
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
FaqI	GGGAC	2 cut(s)	229, 528
FatI	CATG	8 cut(s)	80, 331, 757, 796, 931, 1000, 1057, 1126
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	124, 477, 903
FokI	GGATG	4 cut(s)	459, 551, 704, 1039
FriOI	GRGCYC	2 cut(s)	301, 915
Fsp4HI	GCNGC	3 cut(s)	124, 477, 903
FspBI	CTAG	3 cut(s)	17, 591, 921
GluI	GCNGC	3 cut(s)	124, 477, 903
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	3 cut(s)	120, 219, 638
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	28, 101, 879
HpaII	CCGG	3 cut(s)	120, 219, 638
HphI	GGTGA	4 cut(s)	133, 437, 698, 905
Hpy166II	GTNNAC	2 cut(s)	115, 196
Hpy188I	TCNGA	5 cut(s)	33, 70, 315, 537, 884
Hpy8I	GTNNAC	2 cut(s)	115, 196
Hpy99I	CGWCG	2 cut(s)	191, 839
HpyAV	CCTTC	7 cut(s)	140, 775, 798, 819, 879, 1097, 1113
HpyCH4III	ACNGT	2 cut(s)	174, 634
HpyCH4IV	ACGT	3 cut(s)	111, 682, 979
HpyCH4V	TGCA	2 cut(s)	479, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
HpyF3I	CTNAG	2 cut(s)	498, 881
HpySE526I	ACGT	3 cut(s)	111, 682, 979
Hsp92II	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
LmnI	GCTCC	5 cut(s)	296, 376, 394, 440, 703
Lsp1109I	GCAGC	2 cut(s)	463, 889
LweI	GCATC	2 cut(s)	889, 1132
MaeI	CTAG	3 cut(s)	17, 591, 921
MaeII	ACGT	3 cut(s)	111, 682, 979
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	7 cut(s)	138, 153, 330, 712, 930, 1017, 1042
MboI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
MhlI	GDGCHC	2 cut(s)	301, 915
MluCI	AATT	5 cut(s)	56, 286, 770, 842, 1064
MlyI	GAGTC	2 cut(s)	95, 873
MmeI	TCCRAC	2 cut(s)	293, 681
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	1128, 1131
MspI	CCGG	3 cut(s)	120, 219, 638
MspR9I	CCNGG	2 cut(s)	220, 558
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
NlaIV	GGNNCC	4 cut(s)	217, 298, 562, 705
NmuCI	GTSAC	1 cut(s)	545
NruI	TCGCGA	1 cut(s)	207
PagI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	125, 478, 904
PleI	GAGTC	2 cut(s)	95, 873
PpsI	GAGTC	2 cut(s)	95, 873
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	217, 298, 562, 705
PspPI	GGNCC	4 cut(s)	216, 256, 533, 648
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	6 cut(s)	95, 176, 268, 344, 433, 636
RsaNI	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
RseI	CAYNNNNRTG	2 cut(s)	1128, 1131
SatI	GCNGC	3 cut(s)	124, 477, 903
Sau3AI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
Sau96I	GGNCC	4 cut(s)	216, 256, 533, 648
SchI	GAGTC	2 cut(s)	95, 873
ScrFI	CCNGG	2 cut(s)	220, 558
SduI	GDGCHC	2 cut(s)	301, 915
SfaNI	GCATC	2 cut(s)	889, 1132
SfcI	CTRYAG	1 cut(s)	864
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	3 cut(s)	216, 256, 533
SmiMI	CAYNNNNRTG	2 cut(s)	1128, 1131
Sse9I	AATT	5 cut(s)	56, 286, 770, 842, 1064
SsiI	CCGC	3 cut(s)	25, 105, 123
SspMI	CTAG	3 cut(s)	17, 591, 921
StyD4I	CCNGG	2 cut(s)	218, 556
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	174, 634
TaiI	ACGT	3 cut(s)	114, 685, 982
TaqI	TCGA	1 cut(s)	189
TasI	AATT	5 cut(s)	56, 286, 770, 842, 1064
TatI	WGTACW	3 cut(s)	93, 342, 431
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	476, 902
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	7 cut(s)	17, 69, 381, 480, 783, 855, 1149
TspGWI	ACGGA	2 cut(s)	192, 309
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	216, 256, 533
XapI	RAATTY	2 cut(s)	770, 842
XbaI	TCTAGA	1 cut(s)	920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	17, 591, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.