Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

5659731 .. 5662422

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGCCCCCTCCTCCCAAGTTCTCCTTATTCCACGGCCACCGCAACCCCTCCCGTAACCGCCCCACCGTCCGCGGCAGCCGCCTCTCTCCCCCAAAACCCAACCCCACCCCAACTCAATCCCAGCCCTTCGACCTCTCCAACTGGGACCCCCACCAATCTCCGCCGTCCACCTCCTCCTCCTCCTCCAACCCCAGCCCCGCCGTCCCCCTCTCCTTCCTCTCCCCCATCGCCCGCTTCATCCTCGACGCCTTCCGCAAGAACCGCAACCGCTGGGGCCCGCCGGTCGTCTCGGAGCTCCACAAGCTCCGCCGCGTCACCCCGGACCTGGTCGCCGAGGTCCTCAAGGTCCAAAACGACCCCGTTTCGGCCTCCAAGCTCTTCCACTGGGCAGGTAAGCAAAAGGGTTTCAAGCACACCTTCGCTTCCTACAATGCCTTGACCTATTGCCTGAACCGGGCCCACCGGTTCAGGTCGGCCGACCAAGTCCCCGACTTGATGGAGTCTCAGGGGAAACCCCCCACCGAGAAACAGTTTGAGATTCTGATCAGAATGCACTCTGATGCCAATAGAGGTCTTAGGGTTTATCATGTCTATGAGAAGATGAAGAAGTTTGGGGTTAAACCCAGGGTTTATTTGTACAATAGGGTAATGGATGCATTGGTGAAAACAGGTCATTTGGATTTGGCATTGTCGGTTTACGACGATTTTCGGGGTGATGGGCTGGTGGAGGAGAGTGTGACTTTTATGATTCTGATAAAGGGGATGTGTAAATTTGGGAGAGTTGATGAAATGTTGGGGCTTTTGGATAGAATGAGGGTGAGTTTGTGTAAGCCGGACGTGTTTGCTTACACCGCAATGATAAAGGTGATGGTTTCGGAGGGGGATTTGGATGGTTGTTTGAAGGTTTGGGAGGAAATGAGGAGGGATAGAGTTGAGGCGGATGCTATGGCGTATACGACTCTGGTTACGGGGTTGTGTAAAGGAGGGAGGGTGGAGAAGGGGTATGAGTTGTTTAGGGAGATGAAGGAGAAGGGTTTTTTGATTGATAGAGCGATTTATGGTGTGCTGGTTGAGGGGTTTGTGGAAGACAGGAAGGTTGGGGCAGCGTGTGATTTGTTGAAGGATTTGGTGGGATCAGGGTATAGAGCAGATTTGGGGATATATAATTCTCTGATCAAGGGTTTATGTGATGTTAAGCGGGTTGATAAGGCTTATAAGCTTTTCCGAGTTGCAGTTCAAGAGGGTCTTGGGCCGGATTTTGCGACCGTGAATCCCATTCTGGTGTCTTATGCTGAGATGAGAAGAATGGATAACTTTTGTGAGTTGCTTGCGCAGATGGAGAAATGTGGTTGTCCTGTTATTGATGATCTTTCGAAATTCTTCTCCAATGTTGCTGAAAAAGAGGATGGAGTCATGATGGCTTTGGAAGTGTTTGAAGACTTGAAAGTTAAAAATTATTCTAGTGTTGCGATCTACAATATCCTTATTGCCGGCCTCCACAAATTTGGGAAAGTGAAGAAAGCATTGTCCCTCTTTGATGAGATGAAGAGTTTTGATTTCCAGCCTGACTCGTCCACTTATAGCTCTGCGATTATGTGTTATATTGAAGAAGGGGATCTCCATGAAGCTTGTGCCTGTCATAATAAGATAATTGAGATGTCTTCTGTTCCTTCTATTGCTGCCTATCGCTCTCTTGCTAAAGGGCTTTTCAATGTTGGAGAGATTGATGCAGTTATGCTGCTAGTCCGGGACTGCTTAGCCAGTGTGACAAGTGGGCCCATGACATTCAAGTATTCTCTTACCGTTCTCCATGCATGTAGATCCAATAATGCTGAGAAGGTGATTGATGTACTGAATGAGATGATGCAGCAGGGTTGTCCACCAGATCATGTTATATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGCACAATAGAGGAGGCAAGGAAGGTATTTTCAAATTTGAAAGAGCGCAAACTTATAACAGAAGCCAACATGATTGTGTATGATGATATATTAATTGAACACATGAAGAAGAAGACAGCAGATCTGGTAGTGTCAGGGTTGAAGTTTTTTGGTTTAGAATCCAAGCTGAAAGCAAAGGGTTGTAAACTGCTGTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

709

Amino Acids

79.55

Weight (kDa)

8.77

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	134 - 276	8.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	245 - 289	4.7e-10	PPR repeat family
PPR_2	PF13041	278 - 327	4e-12	PPR repeat family
PPR_1	PF12854	311 - 342	1.4e-08	PPR repeat
PPR_2	PF13041	314 - 361	6.8e-09	PPR repeat family
PPR	PF01535	317 - 346	3.4e-08	PPR repeat
PPR_1	PF12854	380 - 409	1.1e-06	PPR repeat
PPR_2	PF13041	386 - 424	3.8e-06	PPR repeat family
PPR_2	PF13041	488 - 531	5.5e-12	PPR repeat family
PPR	PF01535	491 - 519	9.9e-07	PPR repeat
PPR_1	PF12854	625 - 654	5.6e-09	PPR repeat
PPR_2	PF13041	628 - 660	4.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1215, 1985
Acc16I	TGCGCA	1 cut(s)	1332
Acc36I	ACCTGC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	953
AccII	CGCG	2 cut(s)	72, 312
AclWI	GGATC	3 cut(s)	1141, 1623, 1815
AcoI	YGGCCR	2 cut(s)	34, 474
AcsI	RAATTY	4 cut(s)	770, 1376, 1502, 1963
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	638, 1851
AfiI	CCNNNNNNNGG	3 cut(s)	325, 364, 454
AflIII	ACRYGT	1 cut(s)	837
AgeI	ACCGGT	1 cut(s)	462
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	324, 623
AluBI	AGCT	7 cut(s)	295, 304, 376, 1219, 1584, 1628, 2095
AluI	AGCT	7 cut(s)	295, 304, 376, 1219, 1584, 1628, 2095
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	292, 507
AlwI	GGATC	3 cut(s)	1141, 1623, 1815
AoxI	GGCC	8 cut(s)	34, 274, 366, 456, 474, 1250, 1492, 1775
ApaI	GGGCCC	3 cut(s)	278, 460, 1779
ApeKI	GCWGC	5 cut(s)	75, 1103, 1679, 1738, 1867
ApoI	RAATTY	4 cut(s)	770, 1376, 1502, 1963
AseI	ATTAAT	1 cut(s)	2021
AsiGI	ACCGGT	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	1379
AspLEI	GCGC	2 cut(s)	1333, 1977
AsuC2I	CCSGG	3 cut(s)	320, 455, 1748
AsuHPI	GGTGA	6 cut(s)	307, 673, 725, 829, 877, 1852
AsuII	TTCGAA	1 cut(s)	1373
AvaII	GGWCC	4 cut(s)	145, 322, 337, 346
BaeGI	GKGCMC	3 cut(s)	278, 460, 1779
BanII	GRGCYC	4 cut(s)	278, 297, 460, 1779
BbsI	GAAGAC	4 cut(s)	1092, 1443, 1653, 2048
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	5 cut(s)	87, 1115, 1666, 1725, 1879
BccI	CCATC	8 cut(s)	233, 490, 710, 862, 884, 1330, 1400, 1411
BceAI	ACGGC	3 cut(s)	49, 148, 185
BciT130I	CCWGG	2 cut(s)	326, 625
BclI	TGATCA	2 cut(s)	543, 1173
BcnI	CCSGG	3 cut(s)	320, 455, 1748
BcoDI	GTCTC	2 cut(s)	292, 507
BfaI	CTAG	2 cut(s)	1461, 1742
BfuAI	ACCTGC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	2050
BisI	GCNGC	8 cut(s)	73, 76, 79, 310, 1104, 1680, 1739, 1868
BlpI	GCTNAGC	1 cut(s)	1756
BlsI	GCNGC	8 cut(s)	74, 77, 80, 311, 1105, 1681, 1740, 1869
Bme1390I	CCNGG	5 cut(s)	320, 326, 455, 625, 1748
Bme18I	GGWCC	4 cut(s)	145, 322, 337, 346
BmgBI	CACGTC	1 cut(s)	838
BmiI	GGNNCC	6 cut(s)	146, 147, 275, 276, 458, 1777
BmrFI	CCNGG	5 cut(s)	320, 326, 455, 625, 1748
BmrI	ACTGGG	2 cut(s)	151, 394
BmsI	GCATC	5 cut(s)	550, 643, 931, 1717, 1854
BmuI	ACTGGG	2 cut(s)	151, 394
BpiI	GAAGAC	4 cut(s)	1092, 1443, 1653, 2048
Bpu1102I	GCTNAGC	1 cut(s)	1756
Bpu14I	TTCGAA	1 cut(s)	1373
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	3 cut(s)	320, 455, 1748
BsaBI	GATNNNNATC	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	6 cut(s)	31, 70, 318, 333, 623, 624
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	4 cut(s)	975, 986, 1005, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 364, 454
Bse118I	RCCGGY	3 cut(s)	280, 462, 1490
Bse1I	ACTGG	3 cut(s)	146, 389, 1761
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	2 cut(s)	326, 625
BseDI	CCNNGG	6 cut(s)	31, 70, 318, 333, 623, 624
BseGI	GGATG	6 cut(s)	237, 658, 768, 895, 946, 1411
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	325, 364, 454
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	3 cut(s)	518, 1284, 1824
BseNI	ACTGG	3 cut(s)	146, 389, 1761
BseRI	GAGGAG	7 cut(s)	163, 166, 169, 172, 743, 934, 1955
BseSI	GKGCMC	3 cut(s)	278, 460, 1779
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	5 cut(s)	87, 1115, 1666, 1725, 1879
BseYI	CCCAGC	3 cut(s)	120, 191, 270
Bsh1236I	CGCG	2 cut(s)	72, 312
Bsh1285I	CGRYCG	3 cut(s)	285, 477, 1266
BshFI	GGCC	8 cut(s)	36, 276, 368, 458, 476, 1252, 1494, 1777
BshTI	ACCGGT	1 cut(s)	462
BsiEI	CGRYCG	3 cut(s)	285, 477, 1266
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	8 cut(s)	281, 320, 454, 463, 833, 1253, 1491, 1747
BslFI	GGGAC	5 cut(s)	158, 188, 470, 1513, 1763
BslI	CCNNNNNNNGG	3 cut(s)	325, 364, 454
BsmAI	GTCTC	2 cut(s)	292, 507
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	5 cut(s)	158, 188, 470, 1513, 1763
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	8 cut(s)	36, 276, 368, 458, 476, 1252, 1494, 1777
Bsp119I	TTCGAA	1 cut(s)	1373
Bsp120I	GGGCCC	3 cut(s)	274, 456, 1775
Bsp1286I	GDGCHC	4 cut(s)	278, 297, 460, 1779
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
Bsp1720I	GCTNAGC	1 cut(s)	1756
BspANI	GGCC	8 cut(s)	36, 276, 368, 458, 476, 1252, 1494, 1777
BspCNI	CTCAG	3 cut(s)	517, 1285, 1825
BspFNI	CGCG	2 cut(s)	72, 312
BspHI	TCATGA	1 cut(s)	1413
BspLI	GGNNCC	6 cut(s)	146, 147, 275, 276, 458, 1777
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	3 cut(s)	1141, 1623, 1815
BspQI	GCTCTTC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	1373
BsrDI	GCAATG	1 cut(s)	861
BsrFI	RCCGGY	3 cut(s)	280, 462, 1490
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	3 cut(s)	146, 389, 1761
BssAI	RCCGGY	3 cut(s)	280, 462, 1490
BssECI	CCNNGG	6 cut(s)	31, 70, 318, 333, 623, 624
BssMI	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
BssNAI	GTATAC	1 cut(s)	954
BssNI	GRCGYC	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	954
Bst2UI	CCWGG	2 cut(s)	326, 625
Bst4CI	ACNGT	4 cut(s)	67, 531, 1267, 1804
Bst6I	CTCTTC	2 cut(s)	383, 1541
BstACI	GRCGYC	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	1373
BstC8I	GCNNGC	4 cut(s)	232, 278, 1329, 1492
BstDEI	CTNAG	5 cut(s)	504, 575, 1293, 1756, 1833
BstDSI	CCRYGG	2 cut(s)	31, 70
BstF5I	GGATG	6 cut(s)	237, 658, 768, 895, 946, 1411
BstFNI	CGCG	2 cut(s)	72, 312
BstHHI	GCGC	2 cut(s)	1333, 1977
BstKTI	GATC	9 cut(s)	546, 1136, 1176, 1369, 1473, 1618, 1823, 1888, 2053
BstMAI	GTCTC	2 cut(s)	292, 507
BstMBI	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
BstMCI	CGRYCG	3 cut(s)	285, 477, 1266
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 261, 301, 851
BstNI	CCWGG	2 cut(s)	326, 625
BstNSI	RCATGY	2 cut(s)	1818, 1921
BstSCI	CCNGG	5 cut(s)	318, 324, 453, 623, 1746
BstSLI	GKGCMC	3 cut(s)	278, 460, 1779
BstUI	CGCG	2 cut(s)	72, 312
BstV1I	GCAGC	5 cut(s)	87, 1115, 1666, 1725, 1879
BstV2I	GAAGAC	4 cut(s)	1092, 1443, 1653, 2048
BstX2I	RGATCY	3 cut(s)	1615, 1820, 2050
BstXI	CCANNNNNNTGG	1 cut(s)	1505
BstYI	RGATCY	3 cut(s)	1615, 1820, 2050
BstZ17I	GTATAC	1 cut(s)	954
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	8 cut(s)	36, 276, 368, 458, 476, 1252, 1494, 1777
BtgI	CCRYGG	2 cut(s)	31, 70
BtgZI	GCGATG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	6 cut(s)	237, 658, 768, 895, 946, 1411
BtsIMutI	CAGTG	2 cut(s)	382, 1768
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	4 cut(s)	232, 278, 1329, 1492
CciI	TCATGA	1 cut(s)	1413
CfoI	GCGC	2 cut(s)	1333, 1977
Cfr10I	RCCGGY	3 cut(s)	280, 462, 1490
Cfr42I	CCGCGG	1 cut(s)	73
CseI	GACGC	2 cut(s)	254, 301
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	637, 1850
CspAI	ACCGGT	1 cut(s)	462
CviQI	GTAC	2 cut(s)	637, 1850
DdeI	CTNAG	5 cut(s)	504, 575, 1293, 1756, 1833
DpnI	GATC	9 cut(s)	545, 1135, 1175, 1368, 1472, 1617, 1822, 1887, 2052
DpnII	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
EaeI	YGGCCR	2 cut(s)	34, 474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	383, 1541
EarI	CTCTTC	2 cut(s)	383, 1541
EciI	GGCGGA	3 cut(s)	150, 296, 953
Ecl136II	GAGCTC	1 cut(s)	295
EclXI	CGGCCG	1 cut(s)	474
Eco24I	GRGCYC	4 cut(s)	278, 297, 460, 1779
Eco47I	GGWCC	4 cut(s)	145, 322, 337, 346
Eco52I	CGGCCG	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	3 cut(s)	145, 274, 337
EcoRII	CCWGG	2 cut(s)	324, 623
EcoT22I	ATGCAT	2 cut(s)	658, 1816
EcoT38I	GRGCYC	4 cut(s)	278, 297, 460, 1779
Esp3I	CGTCTC	1 cut(s)	292
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 401, 433, 1230, 1262
FaqI	GGGAC	5 cut(s)	158, 188, 470, 1513, 1763
FauI	CCCGC	4 cut(s)	205, 239, 285, 1191
FbaI	TGATCA	2 cut(s)	543, 1173
FblI	GTMKAC	1 cut(s)	953
Fnu4HI	GCNGC	8 cut(s)	73, 76, 79, 310, 1104, 1680, 1739, 1868
FokI	GGATG	6 cut(s)	224, 665, 775, 902, 953, 1418
FriOI	GRGCYC	4 cut(s)	278, 297, 460, 1779
Fsp4HI	GCNGC	8 cut(s)	73, 76, 79, 310, 1104, 1680, 1739, 1868
FspBI	CTAG	2 cut(s)	1461, 1742
FspI	TGCGCA	1 cut(s)	1332
GlaI	GCGC	2 cut(s)	1332, 1976
GluI	GCNGC	8 cut(s)	73, 76, 79, 310, 1104, 1680, 1739, 1868
GsaI	CCCAGC	3 cut(s)	124, 195, 274
HaeIII	GGCC	8 cut(s)	36, 276, 368, 458, 476, 1252, 1494, 1777
HapII	CCGG	8 cut(s)	281, 320, 454, 463, 833, 1253, 1491, 1747
HgaI	GACGC	2 cut(s)	254, 301
HhaI	GCGC	2 cut(s)	1333, 1977
Hin1I	GRCGYC	1 cut(s)	246
Hin6I	GCGC	2 cut(s)	1331, 1975
HinP1I	GCGC	2 cut(s)	1331, 1975
HindIII	AAGCTT	2 cut(s)	1217, 1626
HinfI	GANTC	8 cut(s)	500, 538, 748, 958, 1270, 1410, 1568, 2087
HpaII	CCGG	8 cut(s)	281, 320, 454, 463, 833, 1253, 1491, 1747
HphI	GGTGA	6 cut(s)	307, 673, 725, 829, 877, 1852
Hpy166II	GTNNAC	6 cut(s)	168, 697, 954, 1575, 1880, 2114
Hpy188I	TCNGA	8 cut(s)	292, 543, 548, 559, 753, 877, 1173, 1226
Hpy188III	TCNNGA	2 cut(s)	1238, 1414
Hpy8I	GTNNAC	6 cut(s)	168, 697, 954, 1575, 1880, 2114
Hpy99I	CGWCG	2 cut(s)	248, 704
HpyCH4III	ACNGT	4 cut(s)	67, 531, 1267, 1804
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	6 cut(s)	553, 656, 1232, 1730, 1814, 1867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 261, 301, 851
HpyF3I	CTNAG	5 cut(s)	504, 575, 1293, 1756, 1833
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	246
HspAI	GCGC	2 cut(s)	1331, 1975
KflI	GGGWCCC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	1490
KroNI	GCCGGC	1 cut(s)	1492
Ksp22I	TGATCA	2 cut(s)	543, 1173
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	3 cut(s)	292, 300, 309
Lsp1109I	GCAGC	5 cut(s)	87, 1115, 1666, 1725, 1879
LweI	GCATC	5 cut(s)	550, 643, 931, 1717, 1854
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	2 cut(s)	1461, 1742
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	5 cut(s)	53, 313, 736, 964, 1765
MalI	GATC	9 cut(s)	545, 1135, 1175, 1368, 1472, 1617, 1822, 1887, 2052
MboI	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
MflI	RGATCY	3 cut(s)	1615, 1820, 2050
MhlI	GDGCHC	4 cut(s)	278, 297, 460, 1779
MluCI	AATT	8 cut(s)	770, 1165, 1376, 1453, 1502, 1650, 1963, 2022
MlyI	GAGTC	4 cut(s)	509, 952, 1419, 1562
MmeI	TCCRAC	3 cut(s)	162, 210, 1696
Mph1103I	ATGCAT	2 cut(s)	658, 1816
MroNI	GCCGGC	1 cut(s)	1490
MroXI	GAANNNNTTC	1 cut(s)	1379
MseI	TTAA	4 cut(s)	618, 1194, 1449, 2021
MslI	CAYNNNNRTG	5 cut(s)	558, 591, 854, 1280, 2003
MspA1I	CMGCKG	2 cut(s)	72, 270
MspI	CCGG	8 cut(s)	281, 320, 454, 463, 833, 1253, 1491, 1747
MspR9I	CCNGG	5 cut(s)	320, 326, 455, 625, 1748
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	2 cut(s)	326, 625
MvnI	CGCG	2 cut(s)	72, 312
MwoI	GCNNNNNNNGC	4 cut(s)	78, 261, 301, 851
NaeI	GCCGGC	1 cut(s)	1492
NciI	CCSGG	3 cut(s)	320, 455, 1748
NdeII	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
NgoMIV	GCCGGC	1 cut(s)	1490
NlaIV	GGNNCC	6 cut(s)	146, 147, 275, 276, 458, 1777
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	3 cut(s)	313, 736, 1765
NsbI	TGCGCA	1 cut(s)	1332
NsiI	ATGCAT	2 cut(s)	658, 1816
NspI	RCATGY	2 cut(s)	1818, 1921
NspV	TTCGAA	1 cut(s)	1373
PagI	TCATGA	1 cut(s)	1413
PasI	CCCWGGG	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	555
PdiI	GCCGGC	1 cut(s)	1492
PdmI	GAANNNNTTC	1 cut(s)	1379
PfeI	GAWTC	4 cut(s)	538, 748, 1270, 2087
PflFI	GACNNNGTC	2 cut(s)	326, 482
PfoI	TCCNGGA	1 cut(s)	1746
PinAI	ACCGGT	1 cut(s)	462
PkrI	GCNGC	8 cut(s)	74, 77, 80, 311, 1105, 1681, 1740, 1869
PleI	GAGTC	4 cut(s)	508, 952, 1418, 1562
PpsI	GAGTC	4 cut(s)	508, 952, 1418, 1562
PpuMI	RGGWCCY	2 cut(s)	145, 337
PshBI	ATTAAT	1 cut(s)	2021
PsiI	TTATAA	2 cut(s)	1215, 1985
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	145, 337
Psp6I	CCWGG	2 cut(s)	324, 623
PspFI	CCCAGC	3 cut(s)	120, 191, 270
PspGI	CCWGG	2 cut(s)	324, 623
PspN4I	GGNNCC	6 cut(s)	146, 147, 275, 276, 458, 1777
PspOMI	GGGCCC	3 cut(s)	274, 456, 1775
PspPPI	RGGWCCY	2 cut(s)	145, 337
PsuI	RGATCY	3 cut(s)	1615, 1820, 2050
PsyI	GACNNNGTC	2 cut(s)	326, 482
RsaI	GTAC	2 cut(s)	638, 1851
RsaNI	GTAC	2 cut(s)	637, 1850
RseI	CAYNNNNRTG	5 cut(s)	558, 591, 854, 1280, 2003
SacI	GAGCTC	1 cut(s)	297
SacII	CCGCGG	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	4 cut(s)	618, 1194, 1449, 2021
SatI	GCNGC	8 cut(s)	73, 76, 79, 310, 1104, 1680, 1739, 1868
Sau3AI	GATC	9 cut(s)	543, 1133, 1173, 1366, 1470, 1615, 1820, 1885, 2050
SchI	GAGTC	4 cut(s)	509, 952, 1419, 1562
ScrFI	CCNGG	5 cut(s)	320, 326, 455, 625, 1748
SduI	GDGCHC	4 cut(s)	278, 297, 460, 1779
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	5 cut(s)	550, 643, 931, 1717, 1854
Sfr303I	CCGCGG	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	1373
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	4 cut(s)	145, 322, 337, 346
SmiMI	CAYNNNNRTG	5 cut(s)	558, 591, 854, 1280, 2003
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	8 cut(s)	770, 1165, 1376, 1453, 1502, 1650, 1963, 2022
SspMI	CTAG	2 cut(s)	1461, 1742
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	5 cut(s)	318, 324, 453, 623, 1746
TaaI	ACNGT	4 cut(s)	67, 531, 1267, 1804
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	3 cut(s)	129, 243, 1373
TasI	AATT	8 cut(s)	770, 1165, 1376, 1453, 1502, 1650, 1963, 2022
TatI	WGTACW	2 cut(s)	636, 1849
TauI	GCSGC	3 cut(s)	75, 81, 312
TfiI	GAWTC	4 cut(s)	538, 748, 1270, 2087
Tru1I	TTAA	4 cut(s)	618, 1194, 1449, 2021
Tru9I	TTAA	4 cut(s)	618, 1194, 1449, 2021
TscAI	CASTG	2 cut(s)	389, 1768
TseFI	GTSAC	3 cut(s)	313, 736, 1765
TseI	GCWGC	5 cut(s)	75, 1103, 1679, 1738, 1867
Tsp45I	GTSAC	3 cut(s)	313, 736, 1765
TspDTI	ATGAA	7 cut(s)	226, 617, 801, 1037, 1559, 1638, 2048
TspRI	CASTG	2 cut(s)	389, 1768
Tth111I	GACNNNGTC	2 cut(s)	326, 482
VpaK11BI	GGWCC	4 cut(s)	145, 322, 337, 346
VspI	ATTAAT	1 cut(s)	2021
XapI	RAATTY	4 cut(s)	770, 1376, 1502, 1963
XceI	RCATGY	2 cut(s)	1818, 1921
XmiI	GTMKAC	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	1379
XspI	CTAG	2 cut(s)	1461, 1742
Zsp2I	ATGCAT	2 cut(s)	658, 1816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.