Rorug02G0291300

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000393
Physical Location & Seq
Reverse (-)
32021498 .. 32027513
6016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0291300.1

Sequence Viewer

Length: 963 bp
ATGGCTTTCTCAGTCTCCACAGCCACAGCCAGTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCATCTATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCCTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCCGTCAAGAAGAAGCGCTCTCCTCCCTCGCCCACCCCCACCCCCGCCAACAACAACAAGAAAAAGCGTAAGGCCAAGGATAAGAATACCAGCTTTAGCAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTGCTTATGGCTTCGTCCAAGCGAATTGCCTCCATTGTTGATCCTACCAATAATTTCCCACTAGAGTGTGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAGGCTATTCTTCCCTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGCTTTTGTTACACAGCAAGGGGAGGGTTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACCGAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTACATGGTTTATACACCCTCTGACCCACTTCTCTTTGTTGCTGTAAAGGATAATGATGGTCTATTGCAAATCGCTGATGATGATCTGCTGGAGGATCCTGCTATCATTAGTGCCATAGATGAGGAGACCGAGTTTAACGCATTGGTGGAGGAAGAAGCAGCTCTTCTTGATTCATTGCTAGGCAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

320

Amino Acids

34.78

Weight (kDa)

4.94

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3727 PF12527 204 - 298 1.1e-20 Protein of unknown function (DUF3727)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
Acc16I TGCGCA 1 cut(s) 768
AciI CCGC 9 cut(s) 111, 138, 141, 204, 323, 335, 339, 548, 630
AclWI GGATC 3 cut(s) 404, 860, 873
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 624
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 155, 341, 731
AflIII ACRYGT 1 cut(s) 746
AgsI TTSAA 1 cut(s) 266
AhdI GACNNNNNGTC 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AleI CACNNNNGTG 1 cut(s) 433
AluBI AGCT 3 cut(s) 252, 462, 932
AluI AGCT 3 cut(s) 252, 462, 932
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 4 cut(s) 19, 91, 130, 890
AlwI GGATC 3 cut(s) 404, 860, 873
Aor51HI AGCGCT 1 cut(s) 176
AoxI GGCC 2 cut(s) 157, 231
ApeKI GCWGC 5 cut(s) 132, 325, 484, 587, 929
AspLEI GCGC 3 cut(s) 137, 177, 769
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 716
BamHI GGATCC 1 cut(s) 865
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 5 cut(s) 119, 312, 471, 574, 941
BccI CCATC 6 cut(s) 321, 530, 695, 710, 755, 821
BceAI ACGGC 1 cut(s) 379
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 19, 91, 130, 890
BfaI CTAG 2 cut(s) 431, 950
BfoI RGCGCY 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 298
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 160, 867
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 2 cut(s) 234, 729
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 341, 731
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 30, 36, 83
Bse3DI GCAATG 1 cut(s) 944
Bse8I GATNNNNATC 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 234, 729
BseGI GGATG 5 cut(s) 280, 313, 361, 478, 766
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 155, 341, 731
BseMI GCAATG 1 cut(s) 944
BseMII CTCAG 3 cut(s) 24, 164, 681
BseNI ACTGG 3 cut(s) 30, 36, 83
BseRI GAGGAG 3 cut(s) 110, 171, 908
BseXI GCAGC 5 cut(s) 119, 312, 471, 574, 941
BseYI CCCAGC 2 cut(s) 304, 341
BshFI GGCC 2 cut(s) 159, 233
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 2 cut(s) 156, 297
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 155, 341, 731
BsmAI GTCTC 4 cut(s) 19, 91, 130, 890
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 2 cut(s) 159, 233
Bso31I GGTCTC 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 4 cut(s) 358, 409, 853, 865
BspACI CCGC 9 cut(s) 111, 138, 141, 204, 323, 335, 339, 548, 630
BspANI GGCC 2 cut(s) 159, 233
BspCNI CTCAG 3 cut(s) 23, 163, 680
BspLI GGNNCC 2 cut(s) 160, 867
BspPI GGATC 3 cut(s) 404, 860, 873
BspQI GCTCTTC 1 cut(s) 939
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 944
BsrFI RCCGGY 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 3 cut(s) 30, 36, 83
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 234, 729
BssMI GATC 4 cut(s) 358, 409, 853, 865
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 939
BstAUI TGTACA 1 cut(s) 622
BstC8I GCNNGC 2 cut(s) 339, 722
BstDEI CTNAG 3 cut(s) 10, 150, 667
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 5 cut(s) 280, 313, 361, 478, 766
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 3 cut(s) 137, 177, 769
BstKTI GATC 4 cut(s) 361, 412, 856, 868
BstMAI GTCTC 4 cut(s) 19, 91, 130, 890
BstMBI GATC 4 cut(s) 358, 409, 853, 865
BstMWI GCNNNNNNNGC 3 cut(s) 331, 334, 593
BstNSI RCATGY 1 cut(s) 750
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 296
BstV1I GCAGC 5 cut(s) 119, 312, 471, 574, 941
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 865
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 2 cut(s) 159, 233
BtsCI GGATG 5 cut(s) 280, 313, 361, 478, 766
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 339, 722
CfoI GCGC 3 cut(s) 137, 177, 769
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 623
CviAII CATG 2 cut(s) 747, 775
CviQI GTAC 1 cut(s) 623
DdeI CTNAG 3 cut(s) 10, 150, 667
DpnI GATC 4 cut(s) 360, 411, 855, 867
DpnII GATC 4 cut(s) 358, 409, 853, 865
DriI GACNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 939
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 939
Eco130I CCWWGG 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 890
Eco47III AGCGCT 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 750, 778
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 1 cut(s) 24
FatI CATG 2 cut(s) 746, 774
FauI CCCGC 2 cut(s) 211, 346
FauNDI CATATG 1 cut(s) 612
FbaI TGATCA 1 cut(s) 358
FokI GGATG 5 cut(s) 287, 300, 368, 485, 773
FspAI RTGCGCAY 1 cut(s) 768
FspBI CTAG 2 cut(s) 431, 950
FspI TGCGCA 1 cut(s) 768
GlaI GCGC 3 cut(s) 136, 176, 768
GsaI CCCAGC 2 cut(s) 308, 345
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 2 cut(s) 159, 233
HapII CCGG 2 cut(s) 156, 297
HhaI GCGC 3 cut(s) 137, 177, 769
Hin1II CATG 2 cut(s) 750, 778
Hin6I GCGC 3 cut(s) 135, 175, 767
HinP1I GCGC 3 cut(s) 135, 175, 767
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 3 cut(s) 117, 293, 941
HpaII CCGG 2 cut(s) 156, 297
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 6 cut(s) 153, 292, 458, 513, 670, 793
Hpy188III TCNNGA 3 cut(s) 166, 465, 938
Hpy8I GTNNAC 1 cut(s) 499
HpyCH4V TGCA 2 cut(s) 616, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 334, 593
HpyF3I CTNAG 3 cut(s) 10, 150, 667
Hsp92II CATG 2 cut(s) 750, 778
HspAI GCGC 3 cut(s) 135, 175, 767
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 4 cut(s) 358, 409, 853, 865
LguI GCTCTTC 1 cut(s) 939
Lsp1109I GCAGC 5 cut(s) 119, 312, 471, 574, 941
LweI GCATC 1 cut(s) 625
MaeI CTAG 2 cut(s) 431, 950
MaeIII GTNAC 3 cut(s) 308, 638, 662
MalI GATC 4 cut(s) 360, 411, 855, 867
MboI GATC 4 cut(s) 358, 409, 853, 865
MboII GAAGA 9 cut(s) 46, 181, 279, 569, 572, 683, 719, 926, 935
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 4 cut(s) 44, 267, 393, 421
MlyI GAGTC 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 618
MseI TTAA 2 cut(s) 518, 906
MslI CAYNNNNRTG 2 cut(s) 433, 759
MspA1I CMGCKG 3 cut(s) 325, 341, 548
MspI CCGG 2 cut(s) 156, 297
MspR9I CCNGG 1 cut(s) 298
MwoI GCNNNNNNNGC 3 cut(s) 331, 334, 593
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 612
NdeII GATC 4 cut(s) 358, 409, 853, 865
NlaIII CATG 2 cut(s) 750, 778
NlaIV GGNNCC 2 cut(s) 160, 867
NsbI TGCGCA 1 cut(s) 768
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 750
OliI CACNNNNGTG 1 cut(s) 433
PciI ACATGT 1 cut(s) 746
PciSI GCTCTTC 1 cut(s) 939
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 2 cut(s) 293, 941
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PscI ACATGT 1 cut(s) 746
PsiI TTATAA 1 cut(s) 443
PspEI GGTNACC 1 cut(s) 308
PspFI CCCAGC 2 cut(s) 304, 341
PspN4I GGNNCC 2 cut(s) 160, 867
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 865
RsaI GTAC 1 cut(s) 624
RsaNI GTAC 1 cut(s) 623
RseI CAYNNNNRTG 2 cut(s) 433, 759
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 518, 906
Sau3AI GATC 4 cut(s) 358, 409, 853, 865
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 527
SetI ASST 4 cut(s) 254, 264, 464, 934
SfaNI GCATC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 433, 759
Sse9I AATT 4 cut(s) 44, 267, 393, 421
SsiI CCGC 9 cut(s) 111, 138, 141, 204, 323, 335, 339, 548, 630
SspMI CTAG 2 cut(s) 431, 950
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 234
TaqII GACCGA 1 cut(s) 914
TasI AATT 4 cut(s) 44, 267, 393, 421
TatI WGTACW 1 cut(s) 622
TauI GCSGC 5 cut(s) 140, 143, 325, 337, 633
TfiI GAWTC 2 cut(s) 293, 941
Tru1I TTAA 2 cut(s) 518, 906
Tru9I TTAA 2 cut(s) 518, 906
TscAI CASTG 1 cut(s) 559
TseI GCWGC 5 cut(s) 132, 325, 484, 587, 929
TspDTI ATGAA 3 cut(s) 489, 573, 933
TspRI CASTG 1 cut(s) 559
XceI RCATGY 1 cut(s) 750
XspI CTAG 2 cut(s) 431, 950
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.