Prupe.1G361600_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000393
Physical Location & Seq
Reverse (-)
33290842 .. 33292598
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G361600.1

Sequence Viewer

Length: 1086 bp
ATGAACAATTTATTTTTCTTTATGTTTGTTTATGTGGATCTGATTCTTTCTACTGCCCAAGCTATTGTGAAGCTACCAAACAATGTAACAATACCGGGTGTTTTTATGTTTGGGGACTCGATAGTTGATACGGGGAACAATAACAACCTTACCACTCTTGTTAAAAGCAATTTCCTTCCATACGGGAGAGATTTTATGGGAGGGTTACCAACTGGAAGATTTGGCAATGGCAAGGTTCCCTCAGACCTTATTGTGGAGGACCTTGGAATCAAAGAATTATTGCCCGCGTATCTTGATCCATGTCTTCAAGCCGAGGACTTGCCTACTGGTGTAAACTTTGCTTCAGGCGGAGCAGGATTTGATCCTCTGACATCTAAGTTAATGTTAGTTATACCGCTTTCGGAACAATTACAACTGCTGAAAGAATACATAGAGAAGCTGAAAAAGTACGTTGGAGAAGAGAGAGCAAGCAGCATTATAAGCAACAGCCTATTCGTGGTGGCTGCAGGCAGTGATGACATTGTCAATACCTACTATCATACACCTGCGCGCTTCTGGAAATATGATATTTATGCCTACACTGATCTTATGCTCACCGAGGCTTCAGCCTTTGTGCAGAAATTATACACATTGGGGGCACGGAGGATAGGCGTGATCAGCGTACCACCAATTGGATGCATACCGGCACAGAGAACTTTAGGAGGAGGTCCAGAAAGAAAGTGTGTAGAGAGATATAATGAAGCAGCAGAGTTGTTCAACAAGAAGCTATCGGCAGAGTTGGATTGCCTTAACAGTCACCAATTCCATGCCACAGTGGCTGTCTTCATGGATGTGTACGGCCCTTTCCTAGATATCATCCACAATCCAAAAAAATATGGATTTGAAGTTATAAACAGAGGGTGCTGTGGTACAGGGATCATAGAGGTTGCTGCATTTTGTAACCAATGTTCTCCCAACACCTGTAAAAATGCAACAAACTATGTTTTCTGGGACAGTTATCATCCCTCTGAGAGAGCATACAGGATTATTACCCATCAGGTACTCCACAAGTCCATTCAAGCCTTCTTCCACAGCCAAAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

40.15

Weight (kDa)

6.25

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 479, 890
AarI CACCTGC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 671
AccII CGCG 2 cut(s) 287, 550
AciI CCGC 3 cut(s) 285, 348, 395
AclWI GGATC 4 cut(s) 45, 290, 356, 923
AcuI CTGAAG 2 cut(s) 327, 588
AfaI GTAC 5 cut(s) 449, 663, 836, 910, 1041
AfiI CCNNNNNNNGG 3 cut(s) 253, 496, 671
AgsI TTSAA 4 cut(s) 308, 757, 884, 1058
AluBI AGCT 4 cut(s) 62, 73, 439, 766
AluI AGCT 4 cut(s) 62, 73, 439, 766
AlwI GGATC 4 cut(s) 45, 290, 356, 923
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 1 cut(s) 838
ApeKI GCWGC 4 cut(s) 471, 503, 743, 929
AspLEI GCGC 2 cut(s) 550, 552
AspS9I GGNCC 3 cut(s) 259, 707, 839
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 586, 788
AvaII GGWCC 2 cut(s) 259, 707
BaeGI GKGCMC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 296, 814
BbvI GCAGC 4 cut(s) 483, 490, 755, 916
BccI CCATC 1 cut(s) 1041
BceAI ACGGC 1 cut(s) 853
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 848
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 815
BisI GCNGC 4 cut(s) 472, 504, 744, 930
BlsI GCNGC 4 cut(s) 473, 505, 745, 931
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 2 cut(s) 259, 707
BmgT120I GGNCC 3 cut(s) 259, 707, 839
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 665
BpiI GAAGAC 2 cut(s) 296, 814
BpuMI CCSGG 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 262, 312, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 496, 671
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 2 cut(s) 217, 331
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 262, 312, 597
BseGI GGATG 4 cut(s) 680, 835, 855, 1000
BseLI CCNNNNNNNGG 3 cut(s) 253, 496, 671
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 255, 999
BseNI ACTGG 2 cut(s) 217, 331
BsePI GCGCGC 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 717
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 4 cut(s) 483, 490, 755, 916
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 2 cut(s) 287, 550
BshFI GGCC 1 cut(s) 840
BsiSI CCGG 2 cut(s) 95, 683
BslFI GGGAC 2 cut(s) 128, 1004
BslI CCNNNNNNNGG 3 cut(s) 253, 496, 671
BsmFI GGGAC 2 cut(s) 128, 1004
BsnI GGCC 1 cut(s) 840
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 6 cut(s) 37, 295, 361, 583, 654, 915
BspACI CCGC 3 cut(s) 285, 348, 395
BspANI GGCC 1 cut(s) 840
BspCNI CTCAG 2 cut(s) 254, 1000
BspFNI CGCG 2 cut(s) 287, 550
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 4 cut(s) 45, 290, 356, 923
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 2 cut(s) 217, 331
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 262, 312, 597
BssHII GCGCGC 1 cut(s) 548
BssMI GATC 6 cut(s) 37, 295, 361, 583, 654, 915
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 3 cut(s) 794, 814, 995
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 4 cut(s) 285, 469, 508, 550
BstDEI CTNAG 3 cut(s) 241, 375, 1008
BstEII GGTNACC 1 cut(s) 204
BstF5I GGATG 4 cut(s) 680, 835, 855, 1000
BstFNI CGCG 2 cut(s) 287, 550
BstHHI GCGC 2 cut(s) 550, 552
BstKTI GATC 6 cut(s) 40, 298, 364, 586, 657, 918
BstMBI GATC 6 cut(s) 37, 295, 361, 583, 654, 915
BstMWI GCNNNNNNNGC 3 cut(s) 480, 657, 815
BstPI GGTNACC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 2 cut(s) 287, 550
BstV1I GCAGC 4 cut(s) 483, 490, 755, 916
BstV2I GAAGAC 2 cut(s) 296, 814
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 840
BtsCI GGATG 4 cut(s) 680, 835, 855, 1000
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 3 cut(s) 517, 579, 819
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 4 cut(s) 285, 469, 508, 550
CaiI CAGNNNCTG 1 cut(s) 818
CfoI GCGC 2 cut(s) 550, 552
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 259, 707, 839
Csp6I GTAC 5 cut(s) 448, 662, 835, 909, 1040
CviAII CATG 3 cut(s) 300, 806, 826
CviQI GTAC 5 cut(s) 448, 662, 835, 909, 1040
DdeI CTNAG 3 cut(s) 241, 375, 1008
DpnI GATC 6 cut(s) 39, 297, 363, 585, 656, 917
DpnII GATC 6 cut(s) 37, 295, 361, 583, 654, 915
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 262
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 259, 707
Eco57I CTGAAG 2 cut(s) 327, 588
Eco91I GGTNACC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 303, 809, 829
FaqI GGGAC 2 cut(s) 128, 1004
FatI CATG 3 cut(s) 299, 805, 825
FauI CCCGC 1 cut(s) 292
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 4 cut(s) 472, 504, 744, 930
FokI GGATG 4 cut(s) 687, 842, 842, 987
Fsp4HI GCNGC 4 cut(s) 472, 504, 744, 930
FspBI CTAG 1 cut(s) 848
GlaI GCGC 2 cut(s) 549, 551
GluI GCNGC 4 cut(s) 472, 504, 744, 930
HaeIII GGCC 1 cut(s) 840
HapII CCGG 2 cut(s) 95, 683
HhaI GCGC 2 cut(s) 550, 552
Hin1II CATG 3 cut(s) 303, 809, 829
Hin6I GCGC 2 cut(s) 548, 550
HinP1I GCGC 2 cut(s) 548, 550
HinfI GANTC 3 cut(s) 43, 116, 267
HpaII CCGG 2 cut(s) 95, 683
HphI GGTGA 2 cut(s) 586, 788
Hpy166II GTNNAC 2 cut(s) 334, 835
Hpy188I TCNGA 5 cut(s) 42, 244, 369, 403, 1009
Hpy188III TCNNGA 3 cut(s) 293, 556, 710
Hpy8I GTNNAC 2 cut(s) 334, 835
HpyAV CCTTC 2 cut(s) 185, 1072
HpyCH4III ACNGT 3 cut(s) 794, 814, 995
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 5 cut(s) 506, 616, 678, 932, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 480, 657, 815
HpyF3I CTNAG 3 cut(s) 241, 375, 1008
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 3 cut(s) 303, 809, 829
HspAI GCGC 2 cut(s) 548, 550
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 6 cut(s) 37, 295, 361, 583, 654, 915
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 4 cut(s) 483, 490, 755, 916
LweI GCATC 1 cut(s) 665
MaeI CTAG 1 cut(s) 848
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 4 cut(s) 85, 204, 794, 938
MalI GATC 6 cut(s) 39, 297, 363, 585, 656, 917
MboI GATC 6 cut(s) 37, 295, 361, 583, 654, 915
MboII GAAGA 5 cut(s) 228, 296, 470, 814, 1057
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 7 cut(s) 7, 169, 275, 407, 620, 669, 800
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 433, 759
Mph1103I ATGCAT 1 cut(s) 680
MseI TTAA 3 cut(s) 162, 380, 789
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 2 cut(s) 95, 683
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 669
MvnI CGCG 2 cut(s) 287, 550
MwoI GCNNNNNNNGC 3 cut(s) 480, 657, 815
NciI CCSGG 1 cut(s) 96
NdeII GATC 6 cut(s) 37, 295, 361, 583, 654, 915
NlaIII CATG 3 cut(s) 303, 809, 829
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 794
NsiI ATGCAT 1 cut(s) 680
PaqCI CACCTGC 1 cut(s) 553
PauI GCGCGC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 43, 267
PflFI GACNNNGTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 4 cut(s) 473, 505, 745, 931
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 259
PsiI TTATAA 2 cut(s) 479, 890
Psp5II RGGWCCY 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 259, 707, 839
PspPPI RGGWCCY 1 cut(s) 259
PsrI GAACNNNNNNTAC 2 cut(s) 931, 963
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 521
PteI GCGCGC 1 cut(s) 548
RsaI GTAC 5 cut(s) 449, 663, 836, 910, 1041
RsaNI GTAC 5 cut(s) 448, 662, 835, 909, 1040
RseI CAYNNNNRTG 1 cut(s) 830
SaqAI TTAA 3 cut(s) 162, 380, 789
SatI GCNGC 4 cut(s) 472, 504, 744, 930
Sau3AI GATC 6 cut(s) 37, 295, 361, 583, 654, 915
Sau96I GGNCC 3 cut(s) 259, 707, 839
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 665
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 259, 707
SmiMI CAYNNNNRTG 1 cut(s) 830
Sse9I AATT 7 cut(s) 7, 169, 275, 407, 620, 669, 800
SsiI CCGC 3 cut(s) 285, 348, 395
SspMI CTAG 1 cut(s) 848
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 794, 814, 995
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 119
TasI AATT 7 cut(s) 7, 169, 275, 407, 620, 669, 800
TfiI GAWTC 2 cut(s) 43, 267
Tru1I TTAA 3 cut(s) 162, 380, 789
Tru9I TTAA 3 cut(s) 162, 380, 789
TscAI CASTG 3 cut(s) 517, 586, 819
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 4 cut(s) 471, 503, 743, 929
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 3 cut(s) 17, 753, 814
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 3 cut(s) 517, 586, 819
Tth111I GACNNNGTC 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 259, 707
XspI CTAG 1 cut(s) 848
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.