Rroxscaffold_2G00143670

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000393
Physical Location & Seq
Forward (+)
81648498 .. 81650936
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143670.1

Sequence Viewer

Length: 1089 bp
ATGGCTCTTCTCTCACAAAAAGCTCGTCCTTCATCTTCATCTGTCAAAGCGTTGGCAATGATCTTATGTATATTCCTCTCCCATAACGTTGCTGCTGTAACACCTCCCATAAATAAAACAACTCCGGCAGTCTTTACTTTCGGAGATTCAACATTAGATACCGGCAATAACGACTACATCATTTGTATACTCAAAAGTAATTTCCCACCTTATGGGAGAGACTTTATGGAAGGAAAGCCTACTGGAAGATTTAGCAATGGAAGAGTCCCCTCAGACTTCATTGGTGAAGGACTTGGATTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGTTCAGGATATGACCCTCTTACTGCCAAATCACAGTCTGTCTTGTCGTTATCAGATCAATTAAACTTGTTCAAAGAATACAAAAGCAAGATAAACGTAGCAGTTGGGAATGAAAGAACAGCCACTCTACTGTCAAAAAGCTTATTCGTTCTTTCGATAGGAAGCAATGACCTTGCACTTAATTATTTTTTTACACCACTGAGGAGCGCTCACTATGATATTCCAGCTTATACAGACTTCCTACTTGAATTAGCTTCAAACTTCTTTCAGGAACTTTATGCAATGGGAGCAAGAGTGATTGGAGTAGCAAGTATGCCGCCAATTGGGTGTGTGCCAGCAGAGAGAACACTCGGTGGAGGCATAGAGAGAGCCTGTGATGAGACTAAGAACCAAGCAGCAATCCTCTTCAACTCAAAGCTCTCCGCCCTTATAGACTCCCTCAATAAGAGACTTCCAAAAGCACAACTGATCATTTACGTTGACATATATAACCCTTTGTTGTCCATTATCCAAGACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGTTGTGGAACAGGAACTGTTGAGTTCGGGTCTCTGTGTAACAAAGACACTCCGGGTACTTGCAACGATGCGTCCAAGTACATATTCTGGGATGGCCTTCATCCCACAGAAAAAGTTTACAGGATCCTCACCTCTGCAATATTAAGGCAATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.29

Weight (kDa)

6.81

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 356 1.8e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 212
AccI GTMKAC 1 cut(s) 187
AciI CCGC 2 cut(s) 695, 801
AclI AACGTT 1 cut(s) 87
AclWI GGATC 4 cut(s) 320, 333, 1048, 1061
AcsI RAATTY 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 2 cut(s) 988, 1010
AfeI AGCGCT 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 212, 701
AgsI TTSAA 8 cut(s) 150, 301, 344, 451, 626, 636, 787, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AluBI AGCT 6 cut(s) 23, 340, 519, 605, 632, 796
AluI AGCT 6 cut(s) 23, 340, 519, 605, 632, 796
Alw26I GTCTC 4 cut(s) 213, 752, 820, 966
AlwI GGATC 4 cut(s) 320, 333, 1048, 1061
AlwNI CAGNNNCTG 1 cut(s) 947
Aor51HI AGCGCT 1 cut(s) 586
AoxI GGCC 1 cut(s) 1024
ApeKI GCWGC 3 cut(s) 92, 337, 773
ApoI RAATTY 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AspLEI GCGC 1 cut(s) 587
AsuC2I CCSGG 1 cut(s) 984
AsuHPI GGTGA 2 cut(s) 296, 1051
BamHI GGATCC 2 cut(s) 325, 1053
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 79, 349, 785
BccI CCATC 1 cut(s) 1016
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 984
BcoDI GTCTC 4 cut(s) 213, 752, 820, 966
BfoI RGCGCY 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 4 cut(s) 93, 338, 695, 774
BlsI GCNGC 4 cut(s) 94, 339, 696, 775
Bme1390I CCNGG 1 cut(s) 984
BmiI GGNNCC 2 cut(s) 327, 1055
BmrFI CCNGG 1 cut(s) 984
BmsI GCATC 1 cut(s) 988
BplI GAGNNNNNCTC 2 cut(s) 571, 603
Bpu10I CCTNAGC 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 701
Bse118I RCCGGY 2 cut(s) 161, 313
Bse1I ACTGG 2 cut(s) 247, 361
Bse3DI GCAATG 4 cut(s) 63, 262, 550, 666
BseGI GGATG 3 cut(s) 935, 1027, 1030
BseLI CCNNNNNNNGG 2 cut(s) 212, 701
BseMI GCAATG 4 cut(s) 63, 262, 550, 666
BseMII CTCAG 3 cut(s) 285, 387, 569
BseNI ACTGG 2 cut(s) 247, 361
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 79, 349, 785
BshFI GGCC 1 cut(s) 1026
BsiSI CCGG 4 cut(s) 125, 162, 314, 983
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 212, 701
BsmAI GTCTC 4 cut(s) 213, 752, 820, 966
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 1026
Bso31I GGTCTC 1 cut(s) 966
Bsp143I GATC 5 cut(s) 60, 325, 433, 846, 1053
BspACI CCGC 2 cut(s) 695, 801
BspANI GGCC 1 cut(s) 1026
BspCNI CTCAG 3 cut(s) 284, 386, 570
BspLI GGNNCC 2 cut(s) 327, 1055
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 4 cut(s) 320, 333, 1048, 1061
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 966
BsrDI GCAATG 4 cut(s) 63, 262, 550, 666
BsrFI RCCGGY 2 cut(s) 161, 313
BsrI ACTGG 2 cut(s) 247, 361
BssAI RCCGGY 2 cut(s) 161, 313
BssMI GATC 5 cut(s) 60, 325, 433, 846, 1053
BssNAI GTATAC 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 414, 510, 949
Bst6I CTCTTC 3 cut(s) 12, 256, 788
BstC8I GCNNGC 2 cut(s) 315, 714
BstDEI CTNAG 4 cut(s) 271, 373, 578, 762
BstF5I GGATG 3 cut(s) 935, 1027, 1030
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 5 cut(s) 63, 328, 436, 849, 1056
BstMAI GTCTC 4 cut(s) 213, 752, 820, 966
BstMBI GATC 5 cut(s) 60, 325, 433, 846, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 982
BstV1I GCAGC 3 cut(s) 79, 349, 785
BstX2I RGATCY 2 cut(s) 325, 1053
BstYI RGATCY 2 cut(s) 325, 1053
BstZ17I GTATAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 935, 1027, 1030
BtsIMutI CAGTG 1 cut(s) 575
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 315, 714
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 2 cut(s) 161, 313
CseI GACGC 1 cut(s) 990
Csp6I GTAC 2 cut(s) 987, 1009
CviQI GTAC 2 cut(s) 987, 1009
DdeI CTNAG 4 cut(s) 271, 373, 578, 762
DpnI GATC 5 cut(s) 62, 327, 435, 848, 1055
DpnII GATC 5 cut(s) 60, 325, 433, 846, 1053
DraIII CACNNNGTG 1 cut(s) 731
Eam1104I CTCTTC 3 cut(s) 12, 256, 788
EarI CTCTTC 3 cut(s) 12, 256, 788
EciI GGCGGA 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 966
Eco47III AGCGCT 1 cut(s) 586
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 846
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 93, 338, 695, 774
FokI GGATG 3 cut(s) 942, 1017, 1034
Fsp4HI GCNGC 4 cut(s) 93, 338, 695, 774
GlaI GCGC 1 cut(s) 586
GluI GCNGC 4 cut(s) 93, 338, 695, 774
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 1 cut(s) 1026
HapII CCGG 4 cut(s) 125, 162, 314, 983
HgaI GACGC 1 cut(s) 990
HhaI GCGC 1 cut(s) 587
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 3 cut(s) 146, 264, 812
HpaII CCGG 4 cut(s) 125, 162, 314, 983
HphI GGTGA 2 cut(s) 296, 1051
Hpy166II GTNNAC 3 cut(s) 188, 859, 1048
Hpy188I TCNGA 4 cut(s) 143, 274, 330, 433
Hpy188III TCNNGA 4 cut(s) 323, 344, 384, 647
Hpy8I GTNNAC 3 cut(s) 188, 859, 1048
HpyAV CCTTC 4 cut(s) 39, 224, 281, 1037
HpyCH4III ACNGT 3 cut(s) 414, 510, 949
HpyCH4IV ACGT 3 cut(s) 87, 474, 855
HpyCH4V TGCA 5 cut(s) 337, 554, 659, 993, 1067
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 4 cut(s) 271, 373, 578, 762
HpySE526I ACGT 3 cut(s) 87, 474, 855
HspAI GCGC 1 cut(s) 585
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 5 cut(s) 60, 325, 433, 846, 1053
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 582, 665
Lsp1109I GCAGC 3 cut(s) 79, 349, 785
LweI GCATC 1 cut(s) 988
MaeII ACGT 3 cut(s) 87, 474, 855
MaeIII GTNAC 2 cut(s) 97, 968
MalI GATC 5 cut(s) 62, 327, 435, 848, 1055
MboI GATC 5 cut(s) 60, 325, 433, 846, 1053
MboII GAAGA 6 cut(s) 27, 258, 273, 313, 316, 775
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 2 cut(s) 325, 1053
MluCI AATT 7 cut(s) 199, 331, 437, 559, 626, 699, 1079
MlyI GAGTC 2 cut(s) 273, 806
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 4 cut(s) 440, 558, 1073, 1082
MspI CCGG 4 cut(s) 125, 162, 314, 983
MspR9I CCNGG 1 cut(s) 984
MunI CAATTG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 665
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 984
NdeII GATC 5 cut(s) 60, 325, 433, 846, 1053
NgoMIV GCCGGC 1 cut(s) 313
NlaIV GGNNCC 2 cut(s) 327, 1055
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 4 cut(s) 94, 339, 696, 775
PleI GAGTC 2 cut(s) 272, 806
PpsI GAGTC 2 cut(s) 272, 806
Psp1406I AACGTT 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 327, 1055
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 2 cut(s) 325, 1053
RsaI GTAC 2 cut(s) 988, 1010
RsaNI GTAC 2 cut(s) 987, 1009
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 440, 558, 1073, 1082
SatI GCNGC 4 cut(s) 93, 338, 695, 774
Sau3AI GATC 5 cut(s) 60, 325, 433, 846, 1053
SchI GAGTC 2 cut(s) 273, 806
ScrFI CCNGG 1 cut(s) 984
SfaNI GCATC 1 cut(s) 988
Sse9I AATT 7 cut(s) 199, 331, 437, 559, 626, 699, 1079
SsiI CCGC 2 cut(s) 695, 801
SspI AATATT 1 cut(s) 1071
StyD4I CCNGG 1 cut(s) 982
TaaI ACNGT 3 cut(s) 414, 510, 949
TaiI ACGT 3 cut(s) 90, 477, 858
TaqI TCGA 1 cut(s) 533
TasI AATT 7 cut(s) 199, 331, 437, 559, 626, 699, 1079
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 4 cut(s) 440, 558, 1073, 1082
Tru9I TTAA 4 cut(s) 440, 558, 1073, 1082
TscAI CASTG 1 cut(s) 582
TseI GCWGC 3 cut(s) 92, 337, 773
TspDTI ATGAA 5 cut(s) 21, 27, 268, 504, 1019
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.