Rh2BG126700

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000393
Physical Location & Seq
Forward (+)
10828838 .. 10829423
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG126700.1

Sequence Viewer

Length: 480 bp
ATGGCTCTTCTCTCACAAAAAGCTCGTCCTTCATCTTCATCTGTCAAAGCGTTTGCAATGATCTTATGTATATTCCTCTCCCATAACGTTGCTGCTGTAACACCTCCCATAAATGAAACAACTCCGGCAGTCTTTACTTTCGGAGATTCAACATTAGATACCGGCGATAACGAATACATCATTTTTATACTCAAAAGTAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAAAGCCTACAGGAAGATTTAGCAATGGAAGAGTCCCCTCAGACATCATTGGTGAAGGATTTGGATTAAAGAAGATTTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTCGTGGTGTATGTTTTGCCTCAGCAGGTTCAGGATATGACCCTCTTACTGCCAGATCACAGGTACACAGGTACACACACACACACACACACATATCATATATCTATAGGATTAGTGGTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

159

Amino Acids

17.33

Weight (kDa)

9.17

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 212
AclI AACGTT 1 cut(s) 87
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 2 cut(s) 417, 425
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 150, 344
AluBI AGCT 2 cut(s) 23, 340
AluI AGCT 2 cut(s) 23, 340
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 320, 333
ApeKI GCWGC 2 cut(s) 92, 337
ApoI RAATTY 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AsuHPI GGTGA 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 407, 440
BamHI GGATCC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 79, 349
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 240, 457
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 2 cut(s) 93, 338
BlsI GCNGC 2 cut(s) 94, 339
BmiI GGNNCC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 2 cut(s) 161, 313
Bse3DI GCAATG 2 cut(s) 63, 262
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 2 cut(s) 63, 262
BseMII CTCAG 2 cut(s) 285, 387
BseXI GCAGC 2 cut(s) 79, 349
BsiSI CCGG 3 cut(s) 125, 162, 314
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 60, 325, 407
BspCNI CTCAG 2 cut(s) 284, 386
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 320, 333
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 63, 262
BsrFI RCCGGY 2 cut(s) 161, 313
BssAI RCCGGY 2 cut(s) 161, 313
BssMI GATC 3 cut(s) 60, 325, 407
Bst6I CTCTTC 2 cut(s) 12, 256
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 271, 373
BstKTI GATC 3 cut(s) 63, 328, 410
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 60, 325, 407
BstSFI CTRYAG 2 cut(s) 240, 457
BstV1I GCAGC 2 cut(s) 79, 349
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 315
Cfr10I RCCGGY 2 cut(s) 161, 313
Csp6I GTAC 2 cut(s) 416, 424
CviJI RGCY 5 cut(s) 5, 23, 238, 317, 340
CviKI_1 RGCY 5 cut(s) 5, 23, 238, 317, 340
CviQI GTAC 2 cut(s) 416, 424
DdeI CTNAG 2 cut(s) 271, 373
DpnI GATC 3 cut(s) 62, 327, 409
DpnII GATC 3 cut(s) 60, 325, 407
Eam1104I CTCTTC 2 cut(s) 12, 256
EarI CTCTTC 2 cut(s) 12, 256
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 251
Fnu4HI GCNGC 2 cut(s) 93, 338
Fsp4HI GCNGC 2 cut(s) 93, 338
GluI GCNGC 2 cut(s) 93, 338
HapII CCGG 3 cut(s) 125, 162, 314
HinfI GANTC 2 cut(s) 146, 264
HpaII CCGG 3 cut(s) 125, 162, 314
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 418, 426
Hpy188I TCNGA 3 cut(s) 143, 274, 330
Hpy188III TCNNGA 3 cut(s) 323, 344, 384
Hpy8I GTNNAC 2 cut(s) 418, 426
HpyAV CCTTC 2 cut(s) 39, 281
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 56, 337
HpyF3I CTNAG 2 cut(s) 271, 373
HpySE526I ACGT 1 cut(s) 87
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 60, 325, 407
LguI GCTCTTC 1 cut(s) 12
Lsp1109I GCAGC 2 cut(s) 79, 349
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 62, 327, 409
MboI GATC 3 cut(s) 60, 325, 407
MboII GAAGA 4 cut(s) 27, 258, 273, 316
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 199, 331
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 6 cut(s) 86, 114, 224, 280, 382, 405
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 1 cut(s) 299
MspI CCGG 3 cut(s) 125, 162, 314
NaeI GCCGGC 1 cut(s) 315
NdeII GATC 3 cut(s) 60, 325, 407
NgoMIV GCCGGC 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 2 cut(s) 94, 339
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp1406I AACGTT 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 417, 425
RsaNI GTAC 2 cut(s) 416, 424
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 93, 338
Sau3AI GATC 3 cut(s) 60, 325, 407
SchI GAGTC 1 cut(s) 273
SetI ASST 9 cut(s) 25, 90, 106, 211, 342, 351, 382, 417, 425
SfcI CTRYAG 2 cut(s) 240, 457
Sse9I AATT 2 cut(s) 199, 331
TaiI ACGT 1 cut(s) 90
TasI AATT 2 cut(s) 199, 331
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseI GCWGC 2 cut(s) 92, 337
TspDTI ATGAA 3 cut(s) 21, 27, 129
Van91I CCANNNNNTGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.