RchiOBHm_Chr2g0098851

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000393
Physical Location & Seq
Forward (+)
11139755 .. 11141843
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47361

Sequence Viewer

Length: 1086 bp
ATGGCTTTTCTCTCCCCAAAAATTTTTCCTTCAGCTTCATCTGTCAGAGTTTCTGTGATTATCTTATTTATATTGCTCTCCCATAATGTTGCTGCTATAACACTACCCAAAAATGGAACAACTCCAGTGGTGTTTGCTTTTGGAGATTCAATATTGGATACTGGCAATAACGATTACATCATTTCTATGACCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAATGCCTACAGGAAGGTTTAGCAATGGAAGAGTCCCCTCAGACTTCGTTGCTGAAGAATTGGGAGTGAAGAAGATGTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGGAGGTTCAGGATTTGACCCTCTCACTCCCAAATTACAGTCTGGCTTTTCATTATCAGATCAATTAGACTTCTTCAAAGAATACAAAGGGAGGATAACTACAGCAGTTGGGGAGGAAAGAACAGCCACTATAATATCAAAAAGTTTATACGTTGTCTCCGTTGGAAGCAATGACATTGCAAATACTTATTTCTCTACACCACTGAGGAGCTCTCACTATGACATTCCAGCTTATACAGATCTCCTGCTCGAATCAGCAATAAATTTTGTTCAGGAACTTTATGCACTGGGAGCAAGAGTCATTGGAGTATTCAATTTTCCACCACTTGGGTGCTTGCCATCACAGAGAACACTGCATGGAGGCATAGTGAGGGCGTGCTACGAGGCCGAGAACCAAGCTGCAATCCTCTTCAACTCTAAGCTCTCCCCCCAAATAGATTCCCTCAATAAGAGACTTCCAGAAGCAGATGTCATTTACCTTGATATCTATACTCCTTTGCTTTCCATGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGATATATTGAGGTTGGTCCTTTGTGTAACAAAGACTCCCCAGGTACTTGCAGTGACCCGTCAAAGTACCTATTCTGGGATGCTTACCATCCCACGGAGACAGGATACAGGTTCCTCACCTCTATGATTTCCGAACAATCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

361

Amino Acids

39.42

Weight (kDa)

5.07

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 352 3e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1084
AccB7I CCANNNNNTGG 2 cut(s) 212, 701
AclWI GGATC 3 cut(s) 320, 333, 877
AcsI RAATTY 3 cut(s) 21, 331, 637
AcuI CTGAAG 2 cut(s) 15, 306
AfaI GTAC 2 cut(s) 985, 1007
AfiI CCNNNNNNNGG 5 cut(s) 113, 212, 701, 1015, 1033
AgsI TTSAA 6 cut(s) 150, 344, 451, 688, 787, 911
AjnI CCWGG 1 cut(s) 979
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 703
AluBI AGCT 6 cut(s) 35, 340, 585, 605, 773, 796
AluI AGCT 6 cut(s) 35, 340, 585, 605, 773, 796
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 213, 535, 820, 1031
AlwI GGATC 3 cut(s) 320, 333, 877
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 3 cut(s) 92, 337, 773
ApoI RAATTY 3 cut(s) 21, 331, 637
AspS9I GGNCC 1 cut(s) 956
AsuHPI GGTGA 1 cut(s) 1048
AvaII GGWCC 1 cut(s) 956
AxyI CCTNAGG 1 cut(s) 373
BamHI GGATCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 79, 349, 760
BccI CCATC 2 cut(s) 721, 1035
BciT130I CCWGG 1 cut(s) 981
BciVI GTATCC 2 cut(s) 151, 1037
BcoDI GTCTC 4 cut(s) 213, 535, 820, 1031
BfmI CTRYAG 2 cut(s) 240, 474
BfuI GTATCC 2 cut(s) 151, 1037
BglII AGATCT 1 cut(s) 613
BisI GCNGC 3 cut(s) 93, 338, 774
BlsI GCNGC 3 cut(s) 94, 339, 775
Bme1390I CCNGG 1 cut(s) 981
Bme18I GGWCC 1 cut(s) 956
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 2 cut(s) 327, 1052
BmrFI CCNGG 1 cut(s) 981
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 2 cut(s) 917, 1009
BmuI ACTGGG 1 cut(s) 671
BplI GAGNNNNNCTC 2 cut(s) 571, 603
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 979, 1032
BsaXI ACNNNNNCTCC 8 cut(s) 515, 545, 657, 687, 726, 756, 959, 989
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 212, 701, 1015, 1033
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 125, 166, 361, 666
Bse21I CCTNAGG 1 cut(s) 373
Bse3DI GCAATG 3 cut(s) 262, 549, 550
BseBI CCWGG 1 cut(s) 981
BseDI CCNNGG 2 cut(s) 979, 1032
BseGI GGATG 3 cut(s) 932, 1024, 1027
BseLI CCNNNNNNNGG 5 cut(s) 113, 212, 701, 1015, 1033
BseMI GCAATG 3 cut(s) 262, 549, 550
BseMII CTCAG 3 cut(s) 285, 387, 569
BseNI ACTGG 4 cut(s) 125, 166, 361, 666
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 79, 349, 760
BshFI GGCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 5 cut(s) 113, 212, 701, 1015, 1033
BsmAI GTCTC 4 cut(s) 213, 535, 820, 1031
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 4 cut(s) 325, 433, 613, 882
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 3 cut(s) 284, 386, 570
BspLI GGNNCC 2 cut(s) 327, 1052
BspPI GGATC 3 cut(s) 320, 333, 877
BsrDI GCAATG 3 cut(s) 262, 549, 550
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 4 cut(s) 125, 166, 361, 666
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 979, 1032
BssMI GATC 4 cut(s) 325, 433, 613, 882
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 256, 788
BstC8I GCNNGC 3 cut(s) 315, 710, 751
BstDEI CTNAG 4 cut(s) 271, 373, 578, 792
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 3 cut(s) 932, 1024, 1027
BstKTI GATC 4 cut(s) 328, 436, 616, 885
BstMAI GTCTC 4 cut(s) 213, 535, 820, 1031
BstMBI GATC 4 cut(s) 325, 433, 613, 882
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 981
BstSCI CCNGG 1 cut(s) 979
BstSFI CTRYAG 2 cut(s) 240, 474
BstV1I GCAGC 3 cut(s) 79, 349, 760
BstX2I RGATCY 2 cut(s) 325, 613
BstYI RGATCY 2 cut(s) 325, 613
Bsu36I CCTNAGG 1 cut(s) 373
BsuI GTATCC 2 cut(s) 151, 1037
BsuRI GGCC 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 1032
BtsCI GGATG 3 cut(s) 932, 1024, 1027
BtsI GCAGTG 2 cut(s) 725, 997
BtsIMutI CAGTG 5 cut(s) 132, 575, 659, 725, 997
Cac8I GCNNGC 3 cut(s) 315, 710, 751
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 984, 1006
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 2 cut(s) 731, 880
CviQI GTAC 2 cut(s) 984, 1006
DdeI CTNAG 4 cut(s) 271, 373, 578, 792
DpnI GATC 4 cut(s) 327, 435, 615, 884
DpnII GATC 4 cut(s) 325, 433, 613, 882
Eam1104I CTCTTC 2 cut(s) 256, 788
EarI CTCTTC 2 cut(s) 256, 788
Ecl136II GAGCTC 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 956
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 2 cut(s) 15, 306
Eco81I CCTNAGG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 979
EcoRV GATATC 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 587
FaeI CATG 2 cut(s) 734, 883
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 730, 879
Fnu4HI GCNGC 3 cut(s) 93, 338, 774
FokI GGATG 3 cut(s) 939, 1014, 1031
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 3 cut(s) 93, 338, 774
GluI GCNGC 3 cut(s) 93, 338, 774
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 761
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 734, 883
HinfI GANTC 6 cut(s) 146, 264, 626, 672, 812, 974
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 1048
Hpy188I TCNGA 5 cut(s) 47, 274, 330, 433, 1072
Hpy188III TCNNGA 6 cut(s) 323, 344, 375, 384, 647, 833
HpyAV CCTTC 2 cut(s) 39, 240
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 6 cut(s) 337, 554, 659, 730, 776, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 4 cut(s) 271, 373, 578, 792
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 2 cut(s) 734, 883
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 325, 433, 613, 882
LmnI GCTCC 2 cut(s) 582, 665
Lsp1109I GCAGC 3 cut(s) 79, 349, 760
LweI GCATC 2 cut(s) 917, 1009
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 965, 992
MalI GATC 4 cut(s) 327, 435, 615, 884
MboI GATC 4 cut(s) 325, 433, 613, 882
MboII GAAGA 6 cut(s) 273, 299, 313, 316, 439, 775
MflI RGATCY 2 cut(s) 325, 613
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 8 cut(s) 21, 199, 290, 331, 407, 437, 637, 688
MlyI GAGTC 3 cut(s) 273, 681, 968
MmeI TCCRAC 1 cut(s) 517
MroNI GCCGGC 1 cut(s) 313
MslI CAYNNNNRTG 3 cut(s) 185, 703, 1061
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 981
MwoI GCNNNNNNNGC 1 cut(s) 665
NaeI GCCGGC 1 cut(s) 315
NdeII GATC 4 cut(s) 325, 433, 613, 882
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 2 cut(s) 734, 883
NlaIV GGNNCC 2 cut(s) 327, 1052
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 1 cut(s) 992
OliI CACNNNNGTG 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 146, 626, 812
PflMI CCANNNNNTGG 2 cut(s) 212, 701
PkrI GCNGC 3 cut(s) 94, 339, 775
PleI GAGTC 3 cut(s) 272, 680, 968
PpsI GAGTC 3 cut(s) 272, 680, 968
PsiI TTATAA 1 cut(s) 1084
Psp124BI GAGCTC 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 979
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 2 cut(s) 327, 1052
PspPI GGNCC 1 cut(s) 956
PsuI RGATCY 2 cut(s) 325, 613
RsaI GTAC 2 cut(s) 985, 1007
RsaNI GTAC 2 cut(s) 984, 1006
RseI CAYNNNNRTG 3 cut(s) 185, 703, 1061
SacI GAGCTC 1 cut(s) 587
SatI GCNGC 3 cut(s) 93, 338, 774
Sau3AI GATC 4 cut(s) 325, 433, 613, 882
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 3 cut(s) 273, 681, 968
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 917, 1009
SfcI CTRYAG 2 cut(s) 240, 474
SinI GGWCC 1 cut(s) 956
SmiMI CAYNNNNRTG 3 cut(s) 185, 703, 1061
Sse9I AATT 8 cut(s) 21, 199, 290, 331, 407, 437, 637, 688
SspI AATATT 1 cut(s) 153
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 979
TaaI ACNGT 1 cut(s) 414
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 624
TasI AATT 8 cut(s) 21, 199, 290, 331, 407, 437, 637, 688
TfiI GAWTC 3 cut(s) 146, 626, 812
TscAI CASTG 5 cut(s) 132, 582, 666, 732, 997
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 3 cut(s) 92, 337, 773
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 2 cut(s) 27, 414
TspGWI ACGGA 2 cut(s) 523, 1049
TspRI CASTG 5 cut(s) 132, 582, 666, 732, 997
Van91I CCANNNNNTGG 2 cut(s) 212, 701
VpaK11BI GGWCC 1 cut(s) 956
XapI RAATTY 3 cut(s) 21, 331, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.