Rw7G037230

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000393
Physical Location & Seq
Forward (+)
56577746 .. 56579973
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037230.1

Sequence Viewer

Length: 1122 bp
ATGTGGAGCCACTATGAAAATTTGCTTTCGAAGTGTTTGAAAGCAGTATTACTATTTGTTCAAGTCCGAGTTCTATTAGTATGTCTGTGCACCTCAAACGTAGTAGCTGAAGCTGGGGACCGACCAGCTGAAATCAACAGAATGTCGTCGCCGTTCGTAGGGGTTTTCGCCTTTGGAGATTCGGTTCTTGACACAGGCAACAACAATGACCTCCCTACTGTAGCCAGATGCAATTTCCCACCCTATGGAAGAGATTTTATAGGAGGCATCCCTACGGGAAGATTTAGCAATGGGAAAGTTTACTCCGACATTATAGTGGAAGCCTTGGGTATCAAGCATCTCTTGCCAGCATACCTTGACCCAAACCTACGCTCTGAAGATCTCCCAACTGGTGTATGCTTTGCTTCTGGCAATTCCGGTTATGATCCTCTAACACCATCTCTAGTGGGAGTTCTATCTTTGTCAGATCAGCTAGAACTCTTCAAAGACTATAGAGTCAAACTAACAGGATTTGTTGGAGAAGAGAGGGCAAAATCCATCATAGCCAACAGTCTATTTCTAGTTTCGTCAGGCAACAATGATATTCTTATTACATATTCTCTCTATATCCAACAATTTCAGTATGATTTTCACTCATATGCTACTCTTTTGGTTAGCTTCGCTTCTACATTTTTAAAGGATTTATATAGCCTAGGGGCACGACGAATTGCTATTATAAGTGCATTCCCACTGGGATGCGCACCATTGGAAAGAAATGGAGAAGGATTACTAGGAGAGTGTTTAGAGTTGCAAAACCAAAGAGCAAAGATGTTCAACTCTCTATTATCATCCGAATTAGATACCATCAACAGGGACTTCCCTGACGCGAAGCTAGTTTTTCTTGATGTCTACCACCCTTTTCTTGAACTCAATCAACACCCTGAAAACTCAGGATTCGAAGTCTTGAGGATTGGGTGTTGTGGTACTGGAACATTTGAAGTGACATCGTTTTTATGTAACCCATGGAATCCATTCACATGTTCAAATGCATCTAATTATCTATACTGGGATGCAATTCATCCGAGCGAACGAGCTCAAAGAATCGTCGCTTCTCAAACTCTCAAATTCATCACGAGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

373

Amino Acids

41.29

Weight (kDa)

5.21

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 55 - 364 1.1e-21 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AasI GACNNNNNNGTC 1 cut(s) 494
Acc16I TGCGCA 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 866
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 2 cut(s) 19, 1103
AcuI CTGAAG 2 cut(s) 129, 396
AfaI GTAC 2 cut(s) 964, 1117
AfiI CCNNNNNNNGG 3 cut(s) 158, 245, 849
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 7 cut(s) 40, 62, 484, 814, 905, 977, 1023
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 7 cut(s) 107, 113, 128, 472, 657, 871, 1073
AluI AGCT 7 cut(s) 107, 113, 128, 472, 657, 871, 1073
Alw21I GWGCWC 2 cut(s) 92, 1075
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 419
ApaLI GTGCAC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 19, 1103
Asp700I GAANNNNTTC 1 cut(s) 1010
AspA2I CCTAGG 1 cut(s) 691
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 118
AsuII TTCGAA 2 cut(s) 29, 936
AvaII GGWCC 1 cut(s) 118
AvrII CCTAGG 1 cut(s) 691
BaeGI GKGCMC 2 cut(s) 92, 700
BanII GRGCYC 1 cut(s) 1075
BauI CACGAG 1 cut(s) 1111
Bbv12I GWGCWC 2 cut(s) 92, 1075
BccI CCATC 3 cut(s) 445, 545, 851
BceAI ACGGC 1 cut(s) 136
BfaI CTAG 6 cut(s) 443, 473, 560, 692, 770, 872
BfmI CTRYAG 2 cut(s) 219, 490
BglII AGATCT 1 cut(s) 379
BlnI CCTAGG 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 8, 119
BmrI ACTGGG 2 cut(s) 740, 1054
BmsI GCATC 6 cut(s) 218, 276, 346, 725, 1037, 1039
BmuI ACTGGG 2 cut(s) 740, 1054
Bpu14I TTCGAA 2 cut(s) 29, 936
BpuEI CTTGAG 1 cut(s) 964
BsaAI YACGTR 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 324, 691, 1001
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 245, 849
Bse1I ACTGG 4 cut(s) 394, 735, 970, 1049
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 3 cut(s) 324, 691, 1001
BseGI GGATG 5 cut(s) 267, 740, 827, 1054, 1057
BseLI CCNNNNNNNGG 3 cut(s) 158, 245, 849
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 942
BseNI ACTGG 4 cut(s) 394, 735, 970, 1049
BseSI GKGCMC 2 cut(s) 92, 700
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 866
BsiHKAI GWGCWC 2 cut(s) 92, 1075
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 2 cut(s) 131, 866
BslI CCNNNNNNNGG 3 cut(s) 158, 245, 849
BsmFI GGGAC 2 cut(s) 131, 866
BsmI GAATGC 1 cut(s) 722
Bsp119I TTCGAA 2 cut(s) 29, 936
Bsp1286I GDGCHC 3 cut(s) 92, 700, 1075
Bsp143I GATC 3 cut(s) 379, 424, 466
Bsp19I CCATGG 1 cut(s) 1001
BspCNI CTCAG 1 cut(s) 941
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 2 cut(s) 8, 119
BspPI GGATC 1 cut(s) 419
BspT104I TTCGAA 2 cut(s) 29, 936
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 4 cut(s) 394, 735, 970, 1049
BssECI CCNNGG 3 cut(s) 324, 691, 1001
BssMI GATC 3 cut(s) 379, 424, 466
BssSI CACGAG 1 cut(s) 1111
BssT1I CCWWGG 3 cut(s) 324, 691, 1001
Bst2BI CACGAG 1 cut(s) 1111
Bst4CI ACNGT 2 cut(s) 220, 551
Bst6I CTCTTC 3 cut(s) 244, 485, 516
BstAPI GCANNNNNTGC 1 cut(s) 343
BstBAI YACGTR 1 cut(s) 1119
BstBI TTCGAA 2 cut(s) 29, 936
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 928
BstDSI CCRYGG 1 cut(s) 1001
BstF5I GGATG 5 cut(s) 267, 740, 827, 1054, 1057
BstFNI CGCG 1 cut(s) 866
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 382, 427, 469
BstMBI GATC 3 cut(s) 379, 424, 466
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 1020
BstSFI CTRYAG 2 cut(s) 219, 490
BstSLI GKGCMC 2 cut(s) 92, 700
BstSNI TACGTA 1 cut(s) 1119
BstUI CGCG 1 cut(s) 866
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 1001
BtsCI GGATG 5 cut(s) 267, 740, 827, 1054, 1057
BtsIMutI CAGTG 1 cut(s) 728
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 872
Csp6I GTAC 2 cut(s) 963, 1116
CviAII CATG 2 cut(s) 1002, 1017
CviQI GTAC 2 cut(s) 963, 1116
DdeI CTNAG 1 cut(s) 928
DpnI GATC 3 cut(s) 381, 426, 468
DpnII GATC 3 cut(s) 379, 424, 466
DraI TTTAAA 1 cut(s) 675
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eam1104I CTCTTC 3 cut(s) 244, 485, 516
EarI CTCTTC 3 cut(s) 244, 485, 516
Ecl136II GAGCTC 1 cut(s) 1073
Eco105I TACGTA 1 cut(s) 1119
Eco130I CCWWGG 3 cut(s) 324, 691, 1001
Eco24I GRGCYC 1 cut(s) 1075
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 1073
Eco57I CTGAAG 2 cut(s) 129, 396
EcoICRI GAGCTC 1 cut(s) 1073
EcoT14I CCWWGG 3 cut(s) 324, 691, 1001
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 1075
ErhI CCWWGG 3 cut(s) 324, 691, 1001
FaeI CATG 2 cut(s) 1005, 1020
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 2 cut(s) 131, 866
FatI CATG 2 cut(s) 1001, 1016
FauNDI CATATG 1 cut(s) 637
FblI GTMKAC 1 cut(s) 888
FokI GGATG 5 cut(s) 254, 747, 814, 1044, 1061
FriOI GRGCYC 1 cut(s) 1075
FspAI RTGCGCAY 1 cut(s) 739
FspBI CTAG 6 cut(s) 443, 473, 560, 692, 770, 872
FspI TGCGCA 1 cut(s) 739
GlaI GCGC 1 cut(s) 739
GsaI CCCAGC 1 cut(s) 117
HapII CCGG 1 cut(s) 417
HgaI GACGC 1 cut(s) 872
HhaI GCGC 1 cut(s) 740
Hin1II CATG 2 cut(s) 1005, 1020
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HinfI GANTC 5 cut(s) 179, 495, 933, 1006, 1080
HpaII CCGG 1 cut(s) 417
Hpy166II GTNNAC 3 cut(s) 90, 301, 889
Hpy188I TCNGA 6 cut(s) 68, 307, 376, 466, 832, 1062
Hpy188III TCNNGA 6 cut(s) 188, 881, 902, 930, 943, 1111
Hpy8I GTNNAC 3 cut(s) 90, 301, 889
Hpy99I CGWCG 3 cut(s) 151, 705, 1088
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 2 cut(s) 220, 551
HpyCH4IV ACGT 2 cut(s) 99, 1118
HpyCH4V TGCA 6 cut(s) 90, 231, 722, 790, 1028, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 1 cut(s) 928
HpySE526I ACGT 2 cut(s) 99, 1118
Hsp92II CATG 2 cut(s) 1005, 1020
HspAI GCGC 1 cut(s) 738
Kzo9I GATC 3 cut(s) 379, 424, 466
LmnI GCTCC 1 cut(s) 6
LweI GCATC 6 cut(s) 218, 276, 346, 725, 1037, 1039
MaeI CTAG 6 cut(s) 443, 473, 560, 692, 770, 872
MaeII ACGT 2 cut(s) 99, 1118
MaeIII GTNAC 2 cut(s) 979, 995
MalI GATC 3 cut(s) 381, 426, 468
MboI GATC 3 cut(s) 379, 424, 466
MboII GAAGA 5 cut(s) 261, 291, 389, 472, 533
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 3 cut(s) 92, 700, 1075
MluCI AATT 9 cut(s) 19, 232, 412, 614, 705, 833, 1033, 1053, 1103
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 3 cut(s) 330, 496, 634
MnlI CCTC 6 cut(s) 103, 221, 257, 438, 519, 939
Mph1103I ATGCAT 1 cut(s) 1030
MroXI GAANNNNTTC 1 cut(s) 1010
MseI TTAA 1 cut(s) 674
MslI CAYNNNNRTG 4 cut(s) 314, 636, 733, 1015
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 722
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 1001
NdeI CATATG 1 cut(s) 637
NdeII GATC 3 cut(s) 379, 424, 466
NlaIII CATG 2 cut(s) 1005, 1020
NlaIV GGNNCC 2 cut(s) 8, 119
NmuCI GTSAC 1 cut(s) 979
NsbI TGCGCA 1 cut(s) 739
NsiI ATGCAT 1 cut(s) 1030
NspI RCATGY 1 cut(s) 1020
NspV TTCGAA 2 cut(s) 29, 936
PciI ACATGT 1 cut(s) 1016
PctI GAATGC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 4 cut(s) 179, 933, 1006, 1080
PflMI CCANNNNNTGG 1 cut(s) 245
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 1119
PscI ACATGT 1 cut(s) 1016
PsiI TTATAA 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 8, 119
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 964, 1117
RsaNI GTAC 2 cut(s) 963, 1116
RseI CAYNNNNRTG 4 cut(s) 314, 636, 733, 1015
SacI GAGCTC 1 cut(s) 1075
SaqAI TTAA 1 cut(s) 674
Sau3AI GATC 3 cut(s) 379, 424, 466
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 504
SduI GDGCHC 3 cut(s) 92, 700, 1075
SfaNI GCATC 6 cut(s) 218, 276, 346, 725, 1037, 1039
SfcI CTRYAG 2 cut(s) 219, 490
SfuI TTCGAA 2 cut(s) 29, 936
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 4 cut(s) 314, 636, 733, 1015
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
SnaBI TACGTA 1 cut(s) 1119
Sse9I AATT 9 cut(s) 19, 232, 412, 614, 705, 833, 1033, 1053, 1103
SspMI CTAG 6 cut(s) 443, 473, 560, 692, 770, 872
SstI GAGCTC 1 cut(s) 1075
StyI CCWWGG 3 cut(s) 324, 691, 1001
TaaI ACNGT 2 cut(s) 220, 551
TaiI ACGT 2 cut(s) 102, 1121
TaqI TCGA 2 cut(s) 29, 936
TaqII GACCGA 1 cut(s) 135
TasI AATT 9 cut(s) 19, 232, 412, 614, 705, 833, 1033, 1053, 1103
TfiI GAWTC 4 cut(s) 179, 933, 1006, 1080
Tru1I TTAA 1 cut(s) 674
Tru9I TTAA 1 cut(s) 674
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 979
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 3 cut(s) 30, 1046, 1096
TspRI CASTG 1 cut(s) 735
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 19, 1103
XceI RCATGY 1 cut(s) 1020
XmaJI CCTAGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 888
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 6 cut(s) 443, 473, 560, 692, 770, 872
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.