Rh7AG447900

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000393
Physical Location & Seq
Forward (+)
61059103 .. 61071626
12524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG447900.1

Sequence Viewer

Length: 510 bp
ATGCAACAAGTTGGGAAGGGAGTTCTATCTTTGTCAGATCAGCTAGAACTCTTCAAAGACTATAGAGTCAAACTAACAGGATTTGTTGGAGAAGAGAGGGCAAAATCCATCATAGCCAACAGTCTATTTCTAGTTTCGTCAGGCAACAATGATATTCTTATTACATATTCTCTCTTTATCCGAATATTTCAGTATGATTTTCACTCATATGCTACTCTTTTGGTTAGCTTCGCTTCTACATTTTTAAAGGATTTATATAGCCTTGGGGCACGACGAATTGCTATTATAAGTGCATTCCCATTGGGATGCGCACCATTGGAAAGAAATGGAGGAGGATTACTAGGAGAGTGTTTAGAGTTGCAAAACCAAAGAGCAAAGATGTTCAACTCTCTATTATCATCCGAATTAGATACCATCAACAGGGACTTCCCTAACGCGAAGCTAGTTTTTCTTGATGTCTACCACCCTTTTCTAGAACTCAATCAACACCCTGAAAACTCAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

169

Amino Acids

18.95

Weight (kDa)

5.89

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 5 - 162 6.3e-09 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AasI GACNNNNNNGTC 1 cut(s) 65
Acc16I TGCGCA 1 cut(s) 310
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 437
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 2 cut(s) 55, 385
AluBI AGCT 3 cut(s) 43, 228, 442
AluI AGCT 3 cut(s) 43, 228, 442
AspLEI GCGC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 271
BccI CCATC 2 cut(s) 116, 422
BfaI CTAG 5 cut(s) 44, 131, 341, 443, 473
BfmI CTRYAG 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 505
BmsI GCATC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 311, 398
BseLI CCNNNNNNNGG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 37
BspFNI CGCG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 2 cut(s) 56, 87
BstF5I GGATG 2 cut(s) 311, 398
BstFNI CGCG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 437
BtsCI GGATG 2 cut(s) 311, 398
CfoI GCGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 504
CviJI RGCY 5 cut(s) 43, 116, 228, 261, 442
CviKI_1 RGCY 5 cut(s) 43, 116, 228, 261, 442
CviQI GTAC 1 cut(s) 504
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraI TTTAAA 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 56, 87
EarI CTCTTC 2 cut(s) 56, 87
Eco130I CCWWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 9 cut(s) 63, 113, 166, 195, 208, 210, 256, 258, 287
FaqI GGGAC 1 cut(s) 437
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 1 cut(s) 459
FokI GGATG 2 cut(s) 318, 385
FspAI RTGCGCAY 1 cut(s) 310
FspBI CTAG 5 cut(s) 44, 131, 341, 443, 473
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 3 cut(s) 37, 182, 403
Hpy188III TCNNGA 2 cut(s) 452, 473
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 4, 293, 361
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 63, 126, 406, 504
LweI GCATC 1 cut(s) 296
MaeI CTAG 5 cut(s) 44, 131, 341, 443, 473
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 43, 104
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 276, 404
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 90, 323, 326
MseI TTAA 2 cut(s) 245, 508
MslI CAYNNNNRTG 2 cut(s) 207, 304
Mva1269I GAATGC 1 cut(s) 293
MvnI CGCG 1 cut(s) 437
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 37
NsbI TGCGCA 1 cut(s) 310
PctI GAATGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PsiI TTATAA 1 cut(s) 287
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 2 cut(s) 207, 304
SaqAI TTAA 2 cut(s) 245, 508
Sau3AI GATC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 271
SetI ASST 3 cut(s) 45, 230, 444
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 207, 304
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 2 cut(s) 276, 404
SspI AATATT 1 cut(s) 186
SspMI CTAG 5 cut(s) 44, 131, 341, 443, 473
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 122
TasI AATT 2 cut(s) 276, 404
TatI WGTACW 1 cut(s) 503
Tru1I TTAA 2 cut(s) 245, 508
Tru9I TTAA 2 cut(s) 245, 508
XbaI TCTAGA 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 5 cut(s) 44, 131, 341, 443, 473
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.