RchiOBHm_Chr2g0098871

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000393
Physical Location & Seq
Forward (+)
11151618 .. 11152298
681 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47363

Sequence Viewer

Length: 348 bp
ATGGGAGGAAAGCCTACAGGAAGATTTAGCAATGGAAGAGTCCCCTCAGACATCATTGGTGAAGGATTTGGATTAAAGAAGATTTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGTTCAGGATATGACCGTCTTACTGCCAGATCACAGGTATACACACACACACACACACACACACATCATATATCTATAGGATTAGTGGTGGAAAATAAAAACAAAAGTTTGGGTTTGTTCTTTGAGGTTGGAGAAAAGAGGAGGAAAGATAAGTTTGGTGTGGATAGGATTAGTGGTGGAAGCAACGAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

115

Amino Acids

12.57

Weight (kDa)

9.61

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 192
AclI AACGTT 1 cut(s) 343
AclWI GGATC 2 cut(s) 95, 108
AcsI RAATTY 1 cut(s) 106
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 2 cut(s) 95, 108
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 71
BamHI GGATCC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 124
BfmI CTRYAG 2 cut(s) 15, 228
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 60, 162
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 100, 182
BspCNI CTCAG 2 cut(s) 59, 161
BspLI GGNNCC 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 95, 108
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 2 cut(s) 100, 182
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 46, 148
BstKTI GATC 2 cut(s) 103, 185
BstMBI GATC 2 cut(s) 100, 182
BstSFI CTRYAG 2 cut(s) 15, 228
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 193
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 88
CviJI RGCY 3 cut(s) 13, 92, 115
CviKI_1 RGCY 3 cut(s) 13, 92, 115
DdeI CTNAG 2 cut(s) 46, 148
DpnI GATC 2 cut(s) 102, 184
DpnII GATC 2 cut(s) 100, 182
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
FaiI YATR 6 cut(s) 139, 165, 193, 222, 224, 230
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 26
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
HapII CCGG 1 cut(s) 89
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 49, 105
Hpy188III TCNNGA 3 cut(s) 98, 119, 159
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 46, 148
HpySE526I ACGT 1 cut(s) 343
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 100, 182
LpnPI CCDG 8 cut(s) 3, 83, 102, 117, 138, 144, 173, 193
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 1 cut(s) 343
MalI GATC 2 cut(s) 102, 184
MboI GATC 2 cut(s) 100, 182
MboII GAAGA 3 cut(s) 33, 48, 91
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 5 cut(s) 55, 157, 271, 285, 288
MroNI GCCGGC 1 cut(s) 88
MseI TTAA 1 cut(s) 74
MspI CCGG 1 cut(s) 89
NaeI GCCGGC 1 cut(s) 90
NdeII GATC 2 cut(s) 100, 182
NgoMIV GCCGGC 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp1406I AACGTT 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 100
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 2 cut(s) 100, 182
SchI GAGTC 1 cut(s) 48
SetI ASST 6 cut(s) 117, 126, 157, 192, 282, 346
SfcI CTRYAG 2 cut(s) 15, 228
SgeI CNNG 9 cut(s) 30, 101, 110, 131, 144, 165, 171, 192, 200
Sse9I AATT 1 cut(s) 106
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 346
TasI AATT 1 cut(s) 106
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 1 cut(s) 112
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.