Rmu_sc0008564.1_g000009

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008564.1
OG0000393
Physical Location & Seq
Reverse (-)
26247 .. 27596
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008564.1_g000009.1.cds

Sequence Viewer

Length: 936 bp
atggacacgggcaataatgactacatcatttctatagccaaaagcaatttcccaccttatgggagagactttgtgggaggaaagcctaccggaagatttagcaatggaaaagtcccctcagattttgttgctgaaatatttggagtgaagaagattttgccggcttatctggatccgaaattgcagcttcaagacctactcactggtgtatgttttgcctcagcaggatcaggatatgaccctctcactgccaaattactttctgtcttgtcactaccagatcaattagacttgttcaaaaaatacaaaagcaagataactgcagccgttgggactgaaagaacagccactatactgtcgaaaagcatttcctttctttccatgggaagcaatgaccttgcaattaattatttttctacaccactgaggagccctcactatgacattccagcttatacagatctcatgattgaatcagcttcaaatttcttgcaggaactttatgccctgggagcaagagtgatcggagtagtatgtataccatcaattgggtgtttgccagcacagagaacacttaatggaggtataaagagagcgtgctacgaaaccgggaatcaagcagcaatccttttcaactcgaagctctcccaccttatagattccctcaataagagacttccagaagcacacctcatgtacattgataactacagccctttgctttccctgatccaaaaccctgctcaatatggatttgaagtggtggataaaggatgctgtggaacaggagatcttgaatttggccctctgtgtaacaaagacaccccgggtacttgtaacgatgtgtccaagtacatattctgggatagctttcatcctacagagaaggcatacaggatcctcacctctattagttcaaaggaagttaagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

311

Amino Acids

33.97

Weight (kDa)

7.51

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 59, 548
AccI GTMKAC 1 cut(s) 538
AclWI GGATC 6 cut(s) 167, 180, 235, 724, 892, 905
AcsI RAATTY 2 cut(s) 484, 797
AfaI GTAC 3 cut(s) 698, 832, 854
AfiI CCNNNNNNNGG 2 cut(s) 59, 548
AgsI TTSAA 8 cut(s) 191, 298, 473, 483, 634, 758, 797, 918
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 842, 874
AluBI AGCT 5 cut(s) 187, 452, 479, 643, 870
AluI AGCT 5 cut(s) 187, 452, 479, 643, 870
Alw26I GTCTC 2 cut(s) 60, 667
AlwI GGATC 6 cut(s) 167, 180, 235, 724, 892, 905
Ama87I CYCGRG 1 cut(s) 826
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 3 cut(s) 184, 323, 620
ApoI RAATTY 2 cut(s) 484, 797
AseI ATTAAT 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 803
AsuC2I CCSGG 3 cut(s) 610, 827, 828
AsuHPI GGTGA 1 cut(s) 895
AvaI CYCGRG 1 cut(s) 826
BamHI GGATCC 2 cut(s) 172, 897
BanII GRGCYC 1 cut(s) 434
BbvCI CCTCAGC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 196, 335, 632
BccI CCATC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 3 cut(s) 610, 827, 828
BcoDI GTCTC 2 cut(s) 60, 667
BfmI CTRYAG 4 cut(s) 33, 321, 709, 879
BglII AGATCT 2 cut(s) 460, 790
BisI GCNGC 3 cut(s) 185, 324, 621
BlsI GCNGC 3 cut(s) 186, 325, 622
Bme1390I CCNGG 4 cut(s) 509, 610, 827, 828
BmeT110I CYCGRG 1 cut(s) 826
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 3 cut(s) 174, 431, 899
BmrFI CCNGG 4 cut(s) 509, 610, 827, 828
BmsI GCATC 1 cut(s) 764
BplI GAGNNNNNCTC 2 cut(s) 418, 450
Bpu10I CCTNAGC 1 cut(s) 220
BpuMI CCSGG 3 cut(s) 610, 827, 828
BsaJI CCNNGG 5 cut(s) 381, 507, 508, 825, 826
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 548
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 2 cut(s) 109, 397
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 5 cut(s) 381, 507, 508, 825, 826
BseGI GGATG 2 cut(s) 779, 874
BseLI CCNNNNNNNGG 2 cut(s) 59, 548
BseMI GCAATG 2 cut(s) 109, 397
BseMII CTCAG 3 cut(s) 132, 234, 416
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 196, 335, 632
BshFI GGCC 1 cut(s) 804
BsiHKCI CYCGRG 1 cut(s) 826
BsiSI CCGG 4 cut(s) 90, 161, 609, 827
BslFI GGGAC 2 cut(s) 98, 346
BslI CCNNNNNNNGG 2 cut(s) 59, 548
BsmAI GTCTC 2 cut(s) 60, 667
BsmFI GGGAC 2 cut(s) 98, 346
BsnI GGCC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 826
Bsp1286I GDGCHC 1 cut(s) 434
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
Bsp19I CCATGG 1 cut(s) 381
BspANI GGCC 1 cut(s) 804
BspCNI CTCAG 3 cut(s) 131, 233, 417
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 174, 431, 899
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 6 cut(s) 167, 180, 235, 724, 892, 905
BsrDI GCAATG 2 cut(s) 109, 397
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 5 cut(s) 381, 507, 508, 825, 826
BssMI GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
BssNAI GTATAC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 381
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 162, 561, 598
BstDEI CTNAG 3 cut(s) 118, 220, 425
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 779, 874
BstKTI GATC 8 cut(s) 175, 230, 283, 463, 525, 732, 793, 900
BstMAI GTCTC 2 cut(s) 60, 667
BstMBI GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 507, 608, 825, 826
BstSFI CTRYAG 4 cut(s) 33, 321, 709, 879
BstV1I GCAGC 3 cut(s) 196, 335, 632
BstX2I RGATCY 4 cut(s) 172, 460, 790, 897
BstYI RGATCY 4 cut(s) 172, 460, 790, 897
BstZ17I GTATAC 1 cut(s) 539
BsuRI GGCC 1 cut(s) 804
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 779, 874
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 201, 246, 422
Cac8I GCNNGC 3 cut(s) 162, 561, 598
CciI TCATGA 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 803
Cfr9I CCCGGG 1 cut(s) 826
Csp6I GTAC 3 cut(s) 697, 831, 853
CviAII CATG 3 cut(s) 382, 466, 694
CviQI GTAC 3 cut(s) 697, 831, 853
DdeI CTNAG 3 cut(s) 118, 220, 425
DpnI GATC 8 cut(s) 174, 229, 282, 462, 524, 731, 792, 899
DpnII GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
Eco130I CCWWGG 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 385, 469, 697
FaqI GGGAC 2 cut(s) 98, 346
FatI CATG 3 cut(s) 381, 465, 693
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 185, 324, 621
FokI GGATG 2 cut(s) 786, 861
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 185, 324, 621
GluI GCNGC 3 cut(s) 185, 324, 621
HaeIII GGCC 1 cut(s) 804
HapII CCGG 4 cut(s) 90, 161, 609, 827
Hin1II CATG 3 cut(s) 385, 469, 697
HinfI GANTC 3 cut(s) 473, 613, 659
HpaII CCGG 4 cut(s) 90, 161, 609, 827
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 3 cut(s) 121, 177, 527
Hpy188III TCNNGA 6 cut(s) 170, 191, 231, 466, 680, 794
Hpy8I GTNNAC 1 cut(s) 539
HpyAV CCTTC 1 cut(s) 880
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 184, 323, 401, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 3 cut(s) 118, 220, 425
Hsp92II CATG 3 cut(s) 385, 469, 697
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
LmnI GCTCC 2 cut(s) 429, 512
Lsp1109I GCAGC 3 cut(s) 196, 335, 632
LweI GCATC 1 cut(s) 764
MaeIII GTNAC 3 cut(s) 270, 812, 836
MalI GATC 8 cut(s) 174, 229, 282, 462, 524, 731, 792, 899
MboI GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
MboII GAAGA 3 cut(s) 105, 160, 163
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 4 cut(s) 172, 460, 790, 897
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 9 cut(s) 46, 179, 254, 284, 402, 406, 484, 546, 797
MroNI GCCGGC 1 cut(s) 160
MseI TTAA 3 cut(s) 405, 576, 927
MspI CCGG 4 cut(s) 90, 161, 609, 827
MspR9I CCNGG 4 cut(s) 509, 610, 827, 828
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 512
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 3 cut(s) 610, 827, 828
NcoI CCATGG 1 cut(s) 381
NdeII GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 3 cut(s) 385, 469, 697
NlaIV GGNNCC 3 cut(s) 174, 431, 899
NmuCI GTSAC 1 cut(s) 270
PagI TCATGA 1 cut(s) 465
PasI CCCWGGG 1 cut(s) 508
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 3 cut(s) 473, 613, 659
PflMI CCANNNNNTGG 2 cut(s) 59, 548
PkrI GCNGC 3 cut(s) 186, 325, 622
PshBI ATTAAT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 174, 431, 899
PspPI GGNCC 1 cut(s) 803
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 4 cut(s) 172, 460, 790, 897
RsaI GTAC 3 cut(s) 698, 832, 854
RsaNI GTAC 3 cut(s) 697, 831, 853
SaqAI TTAA 3 cut(s) 405, 576, 927
SatI GCNGC 3 cut(s) 185, 324, 621
Sau3AI GATC 8 cut(s) 172, 227, 280, 460, 522, 729, 790, 897
Sau96I GGNCC 1 cut(s) 803
ScrFI CCNGG 4 cut(s) 509, 610, 827, 828
SduI GDGCHC 1 cut(s) 434
SfaNI GCATC 1 cut(s) 764
SfcI CTRYAG 4 cut(s) 33, 321, 709, 879
SmaI CCCGGG 1 cut(s) 828
Sse9I AATT 9 cut(s) 46, 179, 254, 284, 402, 406, 484, 546, 797
SspI AATATT 1 cut(s) 138
StyD4I CCNGG 4 cut(s) 507, 608, 825, 826
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 359, 638
TasI AATT 9 cut(s) 46, 179, 254, 284, 402, 406, 484, 546, 797
TatI WGTACW 2 cut(s) 696, 852
TfiI GAWTC 3 cut(s) 473, 613, 659
Tru1I TTAA 3 cut(s) 405, 576, 927
Tru9I TTAA 3 cut(s) 405, 576, 927
TscAI CASTG 3 cut(s) 208, 253, 429
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 184, 323, 620
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 863
TspMI CCCGGG 1 cut(s) 826
TspRI CASTG 3 cut(s) 208, 253, 429
Van91I CCANNNNNTGG 2 cut(s) 59, 548
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 2 cut(s) 484, 797
XmaI CCCGGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.