RLG00000019130

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000393
Physical Location & Seq
Reverse (-)
47013099 .. 47014595
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019130

Sequence Viewer

Length: 1086 bp
ATGGCTTCTCTCTCCCAAATACTTGTTCCTTCATCTTCATCTGTCAGAATTTTCTCAATCATTGCAGTCATTTTCCTCTCCCATAATGTTGCTGCAGTAACATCAGCCAAAAATAAAACAACTAGAGCAGTTTTTACTTTCGGAGATTCAATAATGGACACGGGCAATAATGACTACATCATTTCTATAGCCAAAAGCAATTTTCCACCTTACGGGAGAGACTTTGTGGGAGGAAAGCCTACTGGAAGATTTAGCAATGGAAAAGTCCCCTCAGATTTTATTGCTGAAATATTTGGAGTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAAATTGCAGCTTCAAGACCTAATTACTGGTGTATGTTTGGCCTCAGCAGGATCAGGATATGACCTTCTCACTGCCAAAATACTTTCTGTCTTGTCAATAACAGATCAATTAGACTTGTTTAAAAAATACAAAAGCAAGATAACTGCAGCAGTCGGGAATGAAAGAACAGCCACTATACTGTCGGAAAGCATTTCCTTTCTTTCCATGGGAAGCACTGACCTTGCAATTAATTATTTTTCTACACCACTGAGGAGCCCTCACTATGACATTCCAGCTTATACAGATCTCATGATCGAATCAGCTTCATATTTCTTGCAGGAACTTCATGCACTGGGAGCAAGAGCGATCGGAGTAATATCTATACCACCAATTGGGTGTTTGCCAGCACAGAGAACACTTAATGGAGGTATAAAGAGAGCGTGCTACGAAACCGGGAATCAAGCAGCAATCCTTTTCAACTCGAAGCTCTCCCACCTTATAGATGCCCTCAATGAGAGACTTCCAGAAGCACACCTCATGTACATTGATAGCTACAGCCCTTTGCTTTCCCTGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGGGGAACAGGAGATCTTGAATTTGGCCCTCTGTGTAACAAAGACACCCAGGGTACTTGTAACGATGTGTCCAAGTACATATTCTGGGATAGCTTTCATCCTACAGAGAAGGCATACAGGATCCTCGCCTCTATTATTTTCAAAGTTAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.34

Weight (kDa)

7.59

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 355 8.5e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 701
AclWI GGATC 6 cut(s) 320, 333, 388, 877, 1045, 1058
AcsI RAATTY 2 cut(s) 48, 950
AfaI GTAC 3 cut(s) 851, 985, 1007
AfiI CCNNNNNNNGG 2 cut(s) 212, 701
AgsI TTSAA 6 cut(s) 150, 344, 787, 911, 950, 1072
AjnI CCWGG 1 cut(s) 978
AjuI GAANNNNNNNTTGG 4 cut(s) 9, 41, 995, 1027
AluBI AGCT 6 cut(s) 340, 605, 632, 796, 861, 1023
AluI AGCT 6 cut(s) 340, 605, 632, 796, 861, 1023
Alw26I GTCTC 2 cut(s) 213, 820
AlwI GGATC 6 cut(s) 320, 333, 388, 877, 1045, 1058
AoxI GGCC 2 cut(s) 369, 955
ApeKI GCWGC 4 cut(s) 92, 337, 476, 773
ApoI RAATTY 2 cut(s) 48, 950
AseI ATTAAT 1 cut(s) 558
AspS9I GGNCC 1 cut(s) 956
AsuC2I CCSGG 1 cut(s) 763
BamHI GGATCC 2 cut(s) 325, 1050
BanII GRGCYC 1 cut(s) 587
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 4 cut(s) 79, 349, 488, 785
BciT130I CCWGG 1 cut(s) 980
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 213, 820
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 5 cut(s) 93, 186, 474, 862, 1032
BglII AGATCT 2 cut(s) 613, 943
BisI GCNGC 4 cut(s) 93, 338, 477, 774
BlsI GCNGC 4 cut(s) 94, 339, 478, 775
Bme1390I CCNGG 2 cut(s) 763, 980
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 3 cut(s) 327, 584, 1052
BmrFI CCNGG 2 cut(s) 763, 980
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 2 cut(s) 802, 917
BmuI ACTGGG 1 cut(s) 671
BplI GAGNNNNNCTC 2 cut(s) 571, 603
Bpu10I CCTNAGC 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 763
BsaJI CCNNGG 3 cut(s) 534, 978, 979
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 701
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 247, 361, 666
Bse3DI GCAATG 2 cut(s) 60, 262
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 3 cut(s) 534, 978, 979
BseGI GGATG 2 cut(s) 932, 1027
BseLI CCNNNNNNNGG 2 cut(s) 212, 701
BseMI GCAATG 2 cut(s) 60, 262
BseMII CTCAG 3 cut(s) 285, 387, 569
BseNI ACTGG 3 cut(s) 247, 361, 666
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 4 cut(s) 79, 349, 488, 785
BseYI CCCAGC 1 cut(s) 930
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 2 cut(s) 371, 957
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 2 cut(s) 314, 762
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 212, 701
BsmAI GTCTC 2 cut(s) 213, 820
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 371, 957
Bsp1286I GDGCHC 1 cut(s) 587
Bsp1407I TGTACA 1 cut(s) 849
Bsp143I GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
Bsp19I CCATGG 1 cut(s) 534
BspANI GGCC 2 cut(s) 371, 957
BspCNI CTCAG 3 cut(s) 284, 386, 570
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 3 cut(s) 327, 584, 1052
BspMAI CTGCAG 2 cut(s) 97, 478
BspPI GGATC 6 cut(s) 320, 333, 388, 877, 1045, 1058
BsrDI GCAATG 2 cut(s) 60, 262
BsrFI RCCGGY 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 849
BsrI ACTGG 3 cut(s) 247, 361, 666
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 534, 978, 979
BssMI GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 849
BstC8I GCNNGC 3 cut(s) 315, 714, 751
BstDEI CTNAG 3 cut(s) 271, 373, 578
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 932, 1027
BstKTI GATC 9 cut(s) 328, 383, 436, 616, 624, 678, 885, 946, 1053
BstMAI GTCTC 2 cut(s) 213, 820
BstMBI GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 761, 978
BstSFI CTRYAG 5 cut(s) 93, 186, 474, 862, 1032
BstV1I GCAGC 4 cut(s) 79, 349, 488, 785
BstX2I RGATCY 4 cut(s) 325, 613, 943, 1050
BstYI RGATCY 4 cut(s) 325, 613, 943, 1050
BsuRI GGCC 2 cut(s) 371, 957
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 932, 1027
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 4 cut(s) 399, 543, 575, 659
Cac8I GCNNGC 3 cut(s) 315, 714, 751
CciI TCATGA 1 cut(s) 618
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 850, 984, 1006
CviAII CATG 4 cut(s) 535, 619, 656, 847
CviQI GTAC 3 cut(s) 850, 984, 1006
DdeI CTNAG 3 cut(s) 271, 373, 578
DpnI GATC 9 cut(s) 327, 382, 435, 615, 623, 677, 884, 945, 1052
DpnII GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
DraI TTTAAA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 978
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 4 cut(s) 538, 622, 659, 850
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 534, 618, 655, 846
Fnu4HI GCNGC 4 cut(s) 93, 338, 477, 774
FokI GGATG 2 cut(s) 939, 1014
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 93, 338, 477, 774
FspBI CTAG 1 cut(s) 123
GluI GCNGC 4 cut(s) 93, 338, 477, 774
GsaI CCCAGC 1 cut(s) 934
HaeIII GGCC 2 cut(s) 371, 957
HapII CCGG 2 cut(s) 314, 762
Hin1II CATG 4 cut(s) 538, 622, 659, 850
HinfI GANTC 3 cut(s) 146, 626, 766
HpaII CCGG 2 cut(s) 314, 762
Hpy188I TCNGA 6 cut(s) 47, 143, 274, 330, 514, 680
Hpy188III TCNNGA 7 cut(s) 323, 344, 384, 484, 619, 833, 947
HpyAV CCTTC 3 cut(s) 39, 404, 1033
HpyCH4III ACNGT 1 cut(s) 510
HpyCH4V TGCA 7 cut(s) 65, 95, 337, 476, 554, 646, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 3 cut(s) 271, 373, 578
Hsp92II CATG 4 cut(s) 538, 622, 659, 850
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
LmnI GCTCC 2 cut(s) 582, 665
Lsp1109I GCAGC 4 cut(s) 79, 349, 488, 785
LweI GCATC 2 cut(s) 802, 917
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 3 cut(s) 97, 965, 989
MalI GATC 9 cut(s) 327, 382, 435, 615, 623, 677, 884, 945, 1052
MboI GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
MboII GAAGA 4 cut(s) 27, 258, 313, 316
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 4 cut(s) 325, 613, 943, 1050
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 9 cut(s) 48, 199, 332, 351, 437, 555, 559, 699, 950
MmeI TCCRAC 1 cut(s) 492
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 4 cut(s) 450, 558, 729, 1077
MspI CCGG 2 cut(s) 314, 762
MspR9I CCNGG 2 cut(s) 763, 980
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 980
MwoI GCNNNNNNNGC 1 cut(s) 665
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 763
NcoI CCATGG 1 cut(s) 534
NdeII GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 4 cut(s) 538, 622, 659, 850
NlaIV GGNNCC 3 cut(s) 327, 584, 1052
PagI TCATGA 1 cut(s) 618
PasI CCCWGGG 1 cut(s) 979
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 146, 626, 766
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 4 cut(s) 94, 339, 478, 775
Ple19I CGATCG 1 cut(s) 678
PshBI ATTAAT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 978
PspFI CCCAGC 1 cut(s) 930
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 3 cut(s) 327, 584, 1052
PspPI GGNCC 1 cut(s) 956
PstI CTGCAG 2 cut(s) 97, 478
PsuI RGATCY 4 cut(s) 325, 613, 943, 1050
PvuI CGATCG 1 cut(s) 678
RsaI GTAC 3 cut(s) 851, 985, 1007
RsaNI GTAC 3 cut(s) 850, 984, 1006
SaqAI TTAA 4 cut(s) 450, 558, 729, 1077
SatI GCNGC 4 cut(s) 93, 338, 477, 774
Sau3AI GATC 9 cut(s) 325, 380, 433, 613, 621, 675, 882, 943, 1050
Sau96I GGNCC 1 cut(s) 956
ScrFI CCNGG 2 cut(s) 763, 980
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 802, 917
SfcI CTRYAG 5 cut(s) 93, 186, 474, 862, 1032
Sse9I AATT 9 cut(s) 48, 199, 332, 351, 437, 555, 559, 699, 950
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 761, 978
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 510
TaqI TCGA 2 cut(s) 624, 791
TasI AATT 9 cut(s) 48, 199, 332, 351, 437, 555, 559, 699, 950
TatI WGTACW 2 cut(s) 849, 1005
TfiI GAWTC 3 cut(s) 146, 626, 766
Tru1I TTAA 4 cut(s) 450, 558, 729, 1077
Tru9I TTAA 4 cut(s) 450, 558, 729, 1077
TscAI CASTG 4 cut(s) 406, 550, 582, 666
TseI GCWGC 4 cut(s) 92, 337, 476, 773
TspDTI ATGAA 6 cut(s) 21, 27, 504, 624, 644, 1016
TspRI CASTG 4 cut(s) 406, 550, 582, 666
Van91I CCANNNNNTGG 1 cut(s) 701
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 2 cut(s) 48, 950
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.