Rh7CG468400

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000393
Physical Location & Seq
Forward (+)
62633033 .. 62634743
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG468400.1

Sequence Viewer

Length: 792 bp
ATGTCGTCGCCGTTCGTAGGGGTTTTCGCCTTTGGAGATTCGGTTCTTGATACAGGCAACAACAATGACCTTCCTACTGTAGCCAGATGCAATTTCCCACCCTATGGAAGAGATTTTATAGGAGGCATCCCAACGGGAAGATTTAGCAATGGGAAAGTTTACTCCGACATTATAGTGGAAGCCTTGGGTATCAAGCATCTCTTGCCAGCATATCTTGACCCAAACCTACGCTCTGAAGATCTCCCAACTGGTGTATGCTTTGCTTCTGGCAATTCCGGTTATGATCCTCTAACACCATCTCTAGTGGGAGTTCTATCTTTGTCAGATCAGCTAGAACTCTTCAAAGACTATAGAGTCAAACTAACAGGATTTGTTGGAGAAGAGAGGGCAAAATCCATCATAGCCAACAGTCTATTTCTAGTTTCGTCAGGCAACAATGATATTCTTATTACATATAGAGAGAGACAATTTGAGTATGATTTTCACTCATATGCTACTCTTTTGGTTAGCTTCGCTTCTACATTTTTAAAGGATTTATATAGCCTTGGGGCACGACGAATTGCTATTATAAGTGCATTCCCAGTGGGATGCGCACCATTGGAAAGAAATGGAGGAGGATTACTAGGAGAGTGTTTAGAGTTGCAAAACCAAAGAGCAAAGATGTTCAACTCTCTATTATCAGCCGAATTAGATACCATCAACAGGGACTTCCCTGACGCGAAGCTAGTTTTTCTTGATGTCTACCACCCTTTTCTTGAACTCAATCAACACCCTGAAAACTCAGGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

263

Amino Acids

28.87

Weight (kDa)

4.92

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 8 - 254 6.2e-16 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 353
Acc16I TGCGCA 1 cut(s) 592
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 741
AccII CGCG 1 cut(s) 719
AclWI GGATC 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 787
AfiI CCNNNNNNNGG 3 cut(s) 17, 104, 702
AgsI TTSAA 3 cut(s) 343, 667, 758
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 331, 510, 724
AluI AGCT 3 cut(s) 331, 510, 724
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 553
BccI CCATC 3 cut(s) 304, 404, 704
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 5 cut(s) 302, 332, 419, 623, 725
BfmI CTRYAG 2 cut(s) 78, 349
BglII AGATCT 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 4 cut(s) 77, 135, 205, 578
BmuI ACTGGG 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 183, 544
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 104, 702
Bse1I ACTGG 2 cut(s) 253, 581
Bse3DI GCAATG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 183, 544
BseGI GGATG 2 cut(s) 126, 593
BseLI CCNNNNNNNGG 3 cut(s) 17, 104, 702
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 253, 581
BseRI GAGGAG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 719
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 17, 104, 702
BsmAI GTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 3 cut(s) 238, 283, 325
BspFNI CGCG 1 cut(s) 719
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 253, 581
BssECI CCNNGG 2 cut(s) 183, 544
BssMI GATC 3 cut(s) 238, 283, 325
BssT1I CCWWGG 2 cut(s) 183, 544
Bst4CI ACNGT 2 cut(s) 79, 410
Bst6I CTCTTC 3 cut(s) 103, 344, 375
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 781
BstF5I GGATG 2 cut(s) 126, 593
BstFNI CGCG 1 cut(s) 719
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 3 cut(s) 241, 286, 328
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 3 cut(s) 238, 283, 325
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 78, 349
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 2 cut(s) 126, 593
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 593
CseI GACGC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 786
CviJI RGCY 8 cut(s) 83, 182, 331, 404, 510, 543, 683, 724
CviKI_1 RGCY 8 cut(s) 83, 182, 331, 404, 510, 543, 683, 724
CviQI GTAC 1 cut(s) 786
DdeI CTNAG 1 cut(s) 781
DpnI GATC 3 cut(s) 240, 285, 327
DpnII GATC 3 cut(s) 238, 283, 325
DraI TTTAAA 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1104I CTCTTC 3 cut(s) 103, 344, 375
EarI CTCTTC 3 cut(s) 103, 344, 375
Eco130I CCWWGG 2 cut(s) 183, 544
Eco57I CTGAAG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 183, 544
ErhI CCWWGG 2 cut(s) 183, 544
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 719
FauNDI CATATG 1 cut(s) 490
FblI GTMKAC 1 cut(s) 741
FokI GGATG 2 cut(s) 113, 600
FspAI RTGCGCAY 1 cut(s) 592
FspBI CTAG 5 cut(s) 302, 332, 419, 623, 725
FspI TGCGCA 1 cut(s) 592
GlaI GCGC 1 cut(s) 592
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 593
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HinfI GANTC 2 cut(s) 38, 354
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 160, 742
Hpy188I TCNGA 3 cut(s) 166, 235, 325
Hpy188III TCNNGA 4 cut(s) 47, 215, 734, 755
Hpy8I GTNNAC 2 cut(s) 160, 742
Hpy99I CGWCG 2 cut(s) 10, 558
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 79, 410
HpyCH4V TGCA 3 cut(s) 90, 575, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 781
HspAI GCGC 1 cut(s) 591
Kzo9I GATC 3 cut(s) 238, 283, 325
LweI GCATC 4 cut(s) 77, 135, 205, 578
MaeI CTAG 5 cut(s) 302, 332, 419, 623, 725
MalI GATC 3 cut(s) 240, 285, 327
MboI GATC 3 cut(s) 238, 283, 325
MboII GAAGA 5 cut(s) 120, 150, 248, 331, 392
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 5 cut(s) 91, 271, 467, 558, 686
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 2 cut(s) 189, 355
MnlI CCTC 5 cut(s) 116, 297, 378, 605, 608
MseI TTAA 2 cut(s) 527, 790
MslI CAYNNNNRTG 2 cut(s) 173, 489
MspI CCGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 575
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeI CATATG 1 cut(s) 490
NdeII GATC 3 cut(s) 238, 283, 325
NsbI TGCGCA 1 cut(s) 592
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 104
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PsiI TTATAA 1 cut(s) 569
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 787
RsaNI GTAC 1 cut(s) 786
RseI CAYNNNNRTG 2 cut(s) 173, 489
SaqAI TTAA 2 cut(s) 527, 790
Sau3AI GATC 3 cut(s) 238, 283, 325
SchI GAGTC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 553
SetI ASST 6 cut(s) 72, 228, 333, 512, 726, 787
SfaNI GCATC 4 cut(s) 77, 135, 205, 578
SfcI CTRYAG 2 cut(s) 78, 349
SmiMI CAYNNNNRTG 2 cut(s) 173, 489
Sse9I AATT 5 cut(s) 91, 271, 467, 558, 686
SspMI CTAG 5 cut(s) 302, 332, 419, 623, 725
StyI CCWWGG 2 cut(s) 183, 544
TaaI ACNGT 2 cut(s) 79, 410
TasI AATT 5 cut(s) 91, 271, 467, 558, 686
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 527, 790
Tru9I TTAA 2 cut(s) 527, 790
TscAI CASTG 1 cut(s) 588
TspRI CASTG 1 cut(s) 588
Van91I CCANNNNNTGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 741
XspI CTAG 5 cut(s) 302, 332, 419, 623, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.