Rh2CG128300

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000393
Physical Location & Seq
Reverse (-)
11463642 .. 11464114
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG128300.1

Sequence Viewer

Length: 333 bp
ATGGCCAATTCAGCTTCAATTTTCTATCAGGAACTATATAGACAAGGAGCAAGAAGGATTGGAGTACTAAGCTTGCCACCAATTGGGTGTGTGCCGTCACAGAGGACATTGGGTGGAGGCATAGAAGTCAGAGGGTGTTCAAAGATCGCTAACCAAGCGGCAAGGCTCTTCAACTCCAAGCTCTCTTCCCAAATAGATTCCCTCAATAAGAAGCTTCCAGATGCAAGGCTTGTCTACTTTGATATCTACAACAATTTGCTCTCCCTCATCCAAAACCCTTCAAAATATGGTAGCATCTTTATGCTATCACTTCACAAAACCGAAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

9.8

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 11 - 85 1.3e-08 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AccI GTMKAC 1 cut(s) 234
AciI CCGC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 4 cut(s) 18, 141, 172, 282
AluBI AGCT 4 cut(s) 14, 72, 181, 214
AluI AGCT 4 cut(s) 14, 72, 181, 214
AoxI GGCC 1 cut(s) 3
BalI TGGCCA 1 cut(s) 5
BceAI ACGGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmcAI AGTACT 1 cut(s) 66
BmsI GCATC 2 cut(s) 211, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 83
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 173
BssMI GATC 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 173, 190
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 11, 155
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 65
CviJI RGCY 7 cut(s) 5, 14, 72, 166, 181, 214, 229
CviKI_1 RGCY 7 cut(s) 5, 14, 72, 166, 181, 214, 229
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 173, 190
EarI CTCTTC 2 cut(s) 173, 190
Eco32I GATATC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 244
FaiI YATR 5 cut(s) 37, 39, 122, 288, 302
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 70, 212
HinfI GANTC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 29, 218
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 48, 288
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 155
HpyF3I CTNAG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 144
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 14, 231
LweI GCATC 2 cut(s) 211, 303
MaeIII GTNAC 1 cut(s) 96
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 160, 177
MfeI CAATTG 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 7, 18, 81, 253
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 96, 110, 125, 212, 275
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 11, 155
NdeII GATC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 1 cut(s) 160
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 66
SetI ASST 4 cut(s) 16, 74, 183, 216
SfaNI GCATC 2 cut(s) 211, 303
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 4 cut(s) 7, 18, 81, 253
SsiI CCGC 1 cut(s) 158
TasI AATT 4 cut(s) 7, 18, 81, 253
TatI WGTACW 1 cut(s) 64
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TseFI GTSAC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.