FvH4_1g11340

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000393
Physical Location & Seq
Reverse (-)
6179029 .. 6180512
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11340.t1

Sequence Viewer

Length: 1068 bp
ATGGCTTGTGTCTCATCTGTCAGAGTTTTTTCAATCATTATAGTCATTTTCTTCCCCCATAATGTTGCTGCAGTAACAGCATTACCCACAAATGAAACAACTCGAGCGGTGTTTGCTTTCGGAGATTCAATATTCGATACTGGCAATAACGACTACATAATTTCTTTAGCCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTGTGGGAGGAAAGCCTACTGGAAGATTTTGCAATGGAAAACTCCCCTCAGATTTAGTTGCTGAAAAATATGGAGTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGATCTACTTACTGGTGTATGTTTTGCCTCAGCAGGATCAGGATATGACCCTCTCACTCCCAAACTACTTTCTGTCTTGTCACTACCAGATCAATTAGGCATGTTCAGAAAATACAAAAGCAAGATATCTGCAGCAGTTGGGAATGAAAGAACAGCCACTATACTGTCGAAAAGCATTTCCTTTGTTTCCATGGGAAGCAATGACTTTGCAATCAATTATTTTTCCACACCGCTGAGGAGCCCTCACTATGACATTCCAGCTTATACAGATCTCATGATTCAATCAGCTTCAACTTTCTTGCAGGAACTTCATGCACTGGGATCAAGAGTGATTGGAATATTATCTGTACCACCAATTGGGTGTTTGCCAGCACTGAGAACACTCGATGGAGGTATAGAGAAAGCCTGCTACGAAACTGCTAACCAAGCAGCAATTCTCTTCAACTCAAAGCTCTCCCACCTTATAAATTCCCTTAATGAGAGACTTCCAGAAGCACACTTCATCTACATTGAAAACTACAGCCCTTTGCTTTCTCTCTTACAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAAACCTTGAATTTGGCCCTCTGTGTAACAAAGCCTCCCCTGGTACTTGTACGGATGTGTCCAAGTACTTATTCTGGGATAGCTTTCATCCTACAGAGAAGGCATACAGGATCCTCTCCTCTATTAGTTTAAAGGATATTAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

356

Amino Acids

38.66

Weight (kDa)

7.53

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 345 9.7e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AccB7I CCANNNNNTGG 2 cut(s) 191, 680
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 2 cut(s) 107, 554
AclWI GGATC 6 cut(s) 299, 312, 367, 652, 1024, 1037
AcsI RAATTY 3 cut(s) 310, 790, 929
AfaI GTAC 4 cut(s) 672, 964, 970, 986
AfiI CCNNNNNNNGG 2 cut(s) 191, 680
AgsI TTSAA 9 cut(s) 33, 129, 323, 605, 615, 766, 836, 890, 929
AjnI CCWGG 1 cut(s) 958
AjuI GAANNNNNNNTTGG 6 cut(s) 164, 196, 741, 773, 974, 1006
AluBI AGCT 5 cut(s) 319, 584, 611, 775, 1002
AluI AGCT 5 cut(s) 319, 584, 611, 775, 1002
Alw26I GTCTC 3 cut(s) 16, 192, 799
AlwI GGATC 6 cut(s) 299, 312, 367, 652, 1024, 1037
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 934
ApeKI GCWGC 4 cut(s) 68, 316, 455, 752
ApoI RAATTY 3 cut(s) 310, 790, 929
AspS9I GGNCC 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 102
BamHI GGATCC 2 cut(s) 304, 1029
BanII GRGCYC 1 cut(s) 566
BbvCI CCTCAGC 2 cut(s) 352, 557
BbvI GCAGC 4 cut(s) 55, 328, 467, 764
BccI CCATC 1 cut(s) 704
BciT130I CCWGG 1 cut(s) 960
BcoDI GTCTC 3 cut(s) 16, 192, 799
BfmI CTRYAG 4 cut(s) 69, 453, 841, 1011
BglII AGATCT 2 cut(s) 325, 592
BisI GCNGC 4 cut(s) 69, 317, 456, 753
BlsI GCNGC 4 cut(s) 70, 318, 457, 754
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 1 cut(s) 960
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 3 cut(s) 306, 563, 1031
BmrFI CCNGG 1 cut(s) 960
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 1 cut(s) 896
BmuI ACTGGG 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 550, 582
Bpu10I CCTNAGC 2 cut(s) 352, 557
BsaJI CCNNGG 2 cut(s) 513, 958
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 680
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 4 cut(s) 145, 226, 340, 645
Bse3DI GCAATG 2 cut(s) 241, 529
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 513, 958
BseGI GGATG 3 cut(s) 911, 979, 1006
BseLI CCNNNNNNNGG 2 cut(s) 191, 680
BseMI GCAATG 2 cut(s) 241, 529
BseMII CTCAG 4 cut(s) 264, 366, 548, 689
BseNI ACTGG 4 cut(s) 145, 226, 340, 645
BseRI GAGGAG 2 cut(s) 574, 1027
BseXI GCAGC 4 cut(s) 55, 328, 467, 764
BshFI GGCC 1 cut(s) 936
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 191, 680
BsmAI GTCTC 3 cut(s) 16, 192, 799
BsnI GGCC 1 cut(s) 936
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 2 cut(s) 107, 554
BspANI GGCC 1 cut(s) 936
BspCNI CTCAG 4 cut(s) 263, 365, 549, 690
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 306, 563, 1031
BspMAI CTGCAG 2 cut(s) 73, 457
BspPI GGATC 6 cut(s) 299, 312, 367, 652, 1024, 1037
BsrBI CCGCTC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 241, 529
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 4 cut(s) 145, 226, 340, 645
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 513, 958
BssMI GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 767
BstC8I GCNNGC 3 cut(s) 294, 693, 730
BstDEI CTNAG 4 cut(s) 250, 352, 557, 698
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 911, 979, 1006
BstKTI GATC 7 cut(s) 307, 328, 362, 415, 595, 647, 1032
BstMAI GTCTC 3 cut(s) 16, 192, 799
BstMBI GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 77, 113, 749
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 958
BstSFI CTRYAG 4 cut(s) 69, 453, 841, 1011
BstV1I GCAGC 4 cut(s) 55, 328, 467, 764
BstX2I RGATCY 4 cut(s) 304, 325, 592, 1029
BstYI RGATCY 4 cut(s) 304, 325, 592, 1029
BsuRI GGCC 1 cut(s) 936
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 911, 979, 1006
BtsIMutI CAGTG 2 cut(s) 638, 695
Cac8I GCNNGC 3 cut(s) 294, 693, 730
CciI TCATGA 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 935
Csp6I GTAC 4 cut(s) 671, 963, 969, 985
CviAII CATG 4 cut(s) 424, 514, 598, 635
CviQI GTAC 4 cut(s) 671, 963, 969, 985
DdeI CTNAG 4 cut(s) 250, 352, 557, 698
DpnI GATC 7 cut(s) 306, 327, 361, 414, 594, 646, 1031
DpnII GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
DraI TTTAAA 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 958
EcoRV GATATC 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 4 cut(s) 427, 517, 601, 638
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 4 cut(s) 423, 513, 597, 634
Fnu4HI GCNGC 4 cut(s) 69, 317, 456, 753
FokI GGATG 3 cut(s) 918, 986, 993
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 4 cut(s) 69, 317, 456, 753
GluI GCNGC 4 cut(s) 69, 317, 456, 753
HaeIII GGCC 1 cut(s) 936
HapII CCGG 1 cut(s) 293
Hin1II CATG 4 cut(s) 427, 517, 601, 638
HinfI GANTC 2 cut(s) 125, 601
HpaII CCGG 1 cut(s) 293
Hpy188I TCNGA 5 cut(s) 23, 122, 253, 309, 431
Hpy188III TCNNGA 6 cut(s) 302, 323, 363, 598, 648, 812
HpyAV CCTTC 1 cut(s) 1012
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 7 cut(s) 71, 234, 316, 455, 533, 625, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 113, 749
HpyF3I CTNAG 4 cut(s) 250, 352, 557, 698
Hsp92II CATG 4 cut(s) 427, 517, 601, 638
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
LmnI GCTCC 1 cut(s) 561
Lsp1109I GCAGC 4 cut(s) 55, 328, 467, 764
LweI GCATC 1 cut(s) 896
MaeIII GTNAC 3 cut(s) 73, 402, 944
MalI GATC 7 cut(s) 306, 327, 361, 414, 594, 646, 1031
MbiI CCGCTC 1 cut(s) 107
MboI GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
MboII GAAGA 5 cut(s) 43, 237, 292, 295, 754
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 4 cut(s) 304, 325, 592, 1029
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 9 cut(s) 159, 178, 310, 416, 538, 678, 756, 790, 929
MroNI GCCGGC 1 cut(s) 292
MseI TTAA 3 cut(s) 798, 1049, 1059
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 960
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 3 cut(s) 77, 113, 749
NaeI GCCGGC 1 cut(s) 294
NcoI CCATGG 1 cut(s) 513
NdeII GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 4 cut(s) 427, 517, 601, 638
NlaIV GGNNCC 3 cut(s) 306, 563, 1031
NmuCI GTSAC 1 cut(s) 402
NspI RCATGY 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 102
PagI TCATGA 1 cut(s) 597
PdiI GCCGGC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 125, 601
PflMI CCANNNNNTGG 2 cut(s) 191, 680
PkrI GCNGC 4 cut(s) 70, 318, 457, 754
PsiI TTATAA 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 3 cut(s) 306, 563, 1031
PspPI GGNCC 1 cut(s) 935
PspXI VCTCGAGB 1 cut(s) 102
PstI CTGCAG 2 cut(s) 73, 457
PsuI RGATCY 4 cut(s) 304, 325, 592, 1029
RsaI GTAC 4 cut(s) 672, 964, 970, 986
RsaNI GTAC 4 cut(s) 671, 963, 969, 985
SaqAI TTAA 3 cut(s) 798, 1049, 1059
SatI GCNGC 4 cut(s) 69, 317, 456, 753
Sau3AI GATC 7 cut(s) 304, 325, 359, 412, 592, 644, 1029
Sau96I GGNCC 1 cut(s) 935
ScaI AGTACT 1 cut(s) 986
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 1 cut(s) 566
SetI ASST 9 cut(s) 190, 321, 586, 613, 718, 777, 786, 927, 1004
SfaNI GCATC 1 cut(s) 896
SfcI CTRYAG 4 cut(s) 69, 453, 841, 1011
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 9 cut(s) 159, 178, 310, 416, 538, 678, 756, 790, 929
SsiI CCGC 2 cut(s) 107, 554
SspI AATATT 2 cut(s) 132, 663
StyD4I CCNGG 1 cut(s) 958
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 103, 135, 491, 708
TasI AATT 9 cut(s) 159, 178, 310, 416, 538, 678, 756, 790, 929
TatI WGTACW 1 cut(s) 984
TfiI GAWTC 2 cut(s) 125, 601
Tru1I TTAA 3 cut(s) 798, 1049, 1059
Tru9I TTAA 3 cut(s) 798, 1049, 1059
TscAI CASTG 2 cut(s) 645, 702
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 4 cut(s) 68, 316, 455, 752
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 5 cut(s) 108, 483, 623, 814, 995
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 2 cut(s) 645, 702
Van91I CCANNNNNTGG 2 cut(s) 191, 680
XapI RAATTY 3 cut(s) 310, 790, 929
XceI RCATGY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.