RLG00000001135

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000393
Physical Location & Seq
Reverse (-)
10653312 .. 10654761
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001135

Sequence Viewer

Length: 687 bp
ATGTGGAGGCACTATGGAAATTTGCTTTCGAAGTGTTTGAAAGCAGTATTACTATTTGTTCAAGTCCGAGTTCTATTAGTATGTCTGTGCACCTCAAACGTCGTAGCTGAAGCTGGGGACCGACCAGCTGAAATCAACAGAATGTCGTCGCCATTCGTAGGGGTTTTCGCCTTTGGAGATTCGATTCTTGATACAGGCAACAACAATGACCTCCCTACTGTAGCCAGATGCAATTTCCCACCCTGTGGAAGAGATTTTATAGGAGGCATCCCAACGGGAAGATTTAACAATGGGAAAGTTTACTCCGACATTATAGTGGAAGCCTTGGGTATCAAGCATCTCTTGCCAGCATATCTTGACCCAAACCTACGCTCTGAAGATCTCCCAACTGGTGTATGCTTTGCTTCTGGCAATTCCGGTTATGATCCCCTAACACCATCTCTAGTGGGAGTTCTATCTTTGTCAGATCAGCTAGAACTCTTCAAAGACTATAGAGTCAAACTAACAGGATTTGTTGGAGAAGAGAGGGCAAAATCCATCATAGCCAACAGTCTATTTCTAGTTTCGTCAGGCAACAATGATATTCTTATTACATATTCTCTCTATACCCGACAATTTCAGTATGATTTTCACTCATATGCTACCCTTTTGGTTAGCTTCGCTTCTACATTTTTAAAGGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

229

Amino Acids

25.04

Weight (kDa)

6.28

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 55 - 202 1.2e-06 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 245
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 2 cut(s) 129, 396
AdeI CACNNNGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 158, 245
AgsI TTSAA 3 cut(s) 40, 62, 484
AluBI AGCT 5 cut(s) 107, 113, 128, 472, 657
AluI AGCT 5 cut(s) 107, 113, 128, 472, 657
Alw21I GWGCWC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 419
ApaLI GTGCAC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 2 cut(s) 445, 545
BfaI CTAG 3 cut(s) 443, 473, 560
BfmI CTRYAG 2 cut(s) 219, 490
BglII AGATCT 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 119
BmsI GCATC 3 cut(s) 218, 276, 346
Bpu14I TTCGAA 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 245
Bse1I ACTGG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 158, 245
BseNI ACTGG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 158, 245
BsmFI GGGAC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 379, 424, 466
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 29
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 379, 424, 466
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 220, 551
Bst6I CTCTTC 3 cut(s) 244, 485, 516
BstAPI GCANNNNNTGC 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 348
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 3 cut(s) 382, 427, 469
BstMBI GATC 3 cut(s) 379, 424, 466
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstSFI CTRYAG 2 cut(s) 219, 490
BstSLI GKGCMC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 118
CviJI RGCY 8 cut(s) 107, 113, 128, 224, 323, 472, 545, 657
CviKI_1 RGCY 8 cut(s) 107, 113, 128, 224, 323, 472, 545, 657
DpnI GATC 3 cut(s) 381, 426, 468
DpnII GATC 3 cut(s) 379, 424, 466
DraI TTTAAA 1 cut(s) 675
DraIII CACNNNGTG 1 cut(s) 245
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eam1104I CTCTTC 3 cut(s) 244, 485, 516
EarI CTCTTC 3 cut(s) 244, 485, 516
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 129, 396
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 131
FauNDI CATATG 1 cut(s) 637
FokI GGATG 1 cut(s) 254
FspBI CTAG 3 cut(s) 443, 473, 560
GsaI CCCAGC 1 cut(s) 117
HapII CCGG 1 cut(s) 417
HinfI GANTC 3 cut(s) 179, 184, 495
HpaII CCGG 1 cut(s) 417
Hpy166II GTNNAC 2 cut(s) 90, 301
Hpy188I TCNGA 4 cut(s) 68, 307, 376, 466
Hpy188III TCNNGA 2 cut(s) 188, 356
Hpy8I GTNNAC 2 cut(s) 90, 301
Hpy99I CGWCG 2 cut(s) 104, 151
HpyCH4III ACNGT 2 cut(s) 220, 551
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 90, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 3 cut(s) 379, 424, 466
LweI GCATC 3 cut(s) 218, 276, 346
MaeI CTAG 3 cut(s) 443, 473, 560
MaeII ACGT 1 cut(s) 99
MalI GATC 3 cut(s) 381, 426, 468
MboI GATC 3 cut(s) 379, 424, 466
MboII GAAGA 5 cut(s) 261, 291, 389, 472, 533
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 5 cut(s) 19, 232, 412, 614, 682
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 330, 496
MnlI CCTC 4 cut(s) 103, 221, 257, 519
MseI TTAA 3 cut(s) 285, 674, 685
MslI CAYNNNNRTG 2 cut(s) 314, 636
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeI CATATG 1 cut(s) 637
NdeII GATC 3 cut(s) 379, 424, 466
NlaIV GGNNCC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 29
PfeI GAWTC 2 cut(s) 179, 184
PflMI CCANNNNNTGG 1 cut(s) 245
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 314, 636
SaqAI TTAA 3 cut(s) 285, 674, 685
Sau3AI GATC 3 cut(s) 379, 424, 466
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 504
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 218, 276, 346
SfcI CTRYAG 2 cut(s) 219, 490
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 314, 636
Sse9I AATT 5 cut(s) 19, 232, 412, 614, 682
SspMI CTAG 3 cut(s) 443, 473, 560
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 220, 551
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 29, 182
TaqII GACCGA 1 cut(s) 135
TasI AATT 5 cut(s) 19, 232, 412, 614, 682
TfiI GAWTC 2 cut(s) 179, 184
Tru1I TTAA 3 cut(s) 285, 674, 685
Tru9I TTAA 3 cut(s) 285, 674, 685
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 19
XspI CTAG 3 cut(s) 443, 473, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.