FvH4_1g11341

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000393
Physical Location & Seq
Reverse (-)
6182608 .. 6184099
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11341.t1

Sequence Viewer

Length: 1095 bp
ATGGCTTTTGATCTCTCCCAAGGACTTGTTCTTTCATCTTCATCTGTCAAGTTTTTCTCAATTTTTGTAGTCATATTCCTCCTCCATCATAATGTTGCTGCAGTACCACCACCCAAAAATGGAACCACTCTAGCAGTCTTTACTTTCGGAGATTCATTTTTGGATACAGGCAATAACAACTACATCATTTCAATAGGCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTGTGGGAGGAAAGCCTACAGGAAGATCTAGCAATGGAAAACTCCCCTCTGATCTTATTGCTGAAATATATGGAGTGAAGAAGATATTGCCGGCTTATCTGGATCCGACTTTGCAGCTTCAAGACTTACTTACCGGTGTGAACTTTGCTTCAGCAGGATCAGGATATGATCCTGAAACTGCCAAATTGCTGACTGCCTTGGCACTACCAGATCAGTTAAACTTGTTCAAAGAATACAAAAGCAAAATAACTGCAGCAGTTGGGAATGAAACAACAGCCACTATACTGTCGAAAAGCTTTTTTGTTCTTTCTGTGGGAAGCATTGACCTTGCATTTAATTATTTTGCTACACCACTGAGGAGTTCTCAATATGACATTCAAGCATACACAGATCTCCTGATTAAGTTTGCTTCAGATTTCATTCAGGCAATTTATGCAGTGGGAGCAAGAGTGATTGGAATACTAGGTGTACTACCATCTGGGTGCTTTCCATTTGAGAGAACTCTTCATGGAGGCATAGGGAGAGCGTGCTATGATACCGAGAACCAAGCAGCAGTCCTCTTCAACTCTAAGCTCCGCACCCTTATAGATTCCCTCAATGTGAGACTTCCAGAAGCAAAAGTCATTTACCTTGACATATATACCACTTTGCTTTCATTGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAAATCTTGAATTTGGCCCTCTGTGTAACAAACTCTCCCCGGGTACTTGTAACAATGTGTCCGAGTACTTATACTGGGATAGCATTCATCCCACAGAGAAGGCATACAGGATCCTCACCTCTATGATTTTAGAGAAAGCTAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

365

Amino Acids

39.58

Weight (kDa)

6.43

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 46 - 354 1.7e-30 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AciI CCGC 1 cut(s) 805
AclWI GGATC 7 cut(s) 326, 339, 392, 394, 883, 1051, 1064
AcsI RAATTY 1 cut(s) 956
AcuI CTGAAG 2 cut(s) 363, 624
AfaI GTAC 4 cut(s) 105, 699, 991, 1013
AfiI CCNNNNNNNGG 2 cut(s) 119, 218
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 7 cut(s) 192, 350, 457, 608, 793, 917, 956
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 4 cut(s) 346, 525, 802, 1085
AluI AGCT 4 cut(s) 346, 525, 802, 1085
Alw26I GTCTC 2 cut(s) 219, 826
AlwI GGATC 7 cut(s) 326, 339, 392, 394, 883, 1051, 1064
Ama87I CYCGRG 1 cut(s) 985
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 4 cut(s) 98, 343, 482, 779
ApoI RAATTY 1 cut(s) 956
AsiGI ACCGGT 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 962
AsuC2I CCSGG 2 cut(s) 986, 987
AsuHPI GGTGA 1 cut(s) 1054
AvaI CYCGRG 1 cut(s) 985
BamHI GGATCC 2 cut(s) 331, 1056
BbvI GCAGC 4 cut(s) 85, 355, 494, 791
BccI CCATC 2 cut(s) 93, 712
BciVI GTATCC 1 cut(s) 157
BcnI CCSGG 2 cut(s) 986, 987
BcoDI GTCTC 2 cut(s) 219, 826
BfaI CTAG 3 cut(s) 131, 258, 692
BfmI CTRYAG 3 cut(s) 99, 246, 480
BfuI GTATCC 1 cut(s) 157
BglII AGATCT 2 cut(s) 254, 619
BisI GCNGC 4 cut(s) 99, 344, 483, 780
BlsI GCNGC 4 cut(s) 100, 345, 484, 781
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 2 cut(s) 986, 987
BmeT110I CYCGRG 1 cut(s) 985
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 3 cut(s) 124, 333, 1058
BmrFI CCNGG 2 cut(s) 986, 987
BmrI ACTGGG 1 cut(s) 1030
BmsI GCATC 1 cut(s) 923
BmuI ACTGGG 1 cut(s) 1030
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpuMI CCSGG 2 cut(s) 986, 987
BsaJI CCNNGG 4 cut(s) 19, 426, 984, 985
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 965, 995
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 218
Bse118I RCCGGY 2 cut(s) 319, 362
Bse1I ACTGG 1 cut(s) 1025
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 19, 426, 984, 985
BseGI GGATG 2 cut(s) 938, 1033
BseLI CCNNNNNNNGG 2 cut(s) 119, 218
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 1025
BseRI GAGGAG 2 cut(s) 71, 601
BseXI GCAGC 4 cut(s) 85, 355, 494, 791
BshFI GGCC 1 cut(s) 963
BshTI ACCGGT 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 985
BsiSI CCGG 3 cut(s) 320, 363, 986
BslI CCNNNNNNNGG 2 cut(s) 119, 218
BsmAI GTCTC 2 cut(s) 219, 826
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 1 cut(s) 963
BsoBI CYCGRG 1 cut(s) 985
BspACI CCGC 1 cut(s) 805
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 124, 333, 1058
BspMAI CTGCAG 2 cut(s) 103, 484
BspPI GGATC 7 cut(s) 326, 339, 392, 394, 883, 1051, 1064
BsrDI GCAATG 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 319, 362
BsrI ACTGG 1 cut(s) 1025
BssAI RCCGGY 2 cut(s) 319, 362
BssECI CCNNGG 4 cut(s) 19, 426, 984, 985
BssT1I CCWWGG 2 cut(s) 19, 426
Bst4CI ACNGT 1 cut(s) 516
Bst6I CTCTTC 2 cut(s) 738, 794
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 321, 757
BstDEI CTNAG 3 cut(s) 584, 798, 1086
BstF5I GGATG 2 cut(s) 938, 1033
BstMAI GTCTC 2 cut(s) 219, 826
BstMWI GCNNNNNNNGC 2 cut(s) 662, 671
BstSCI CCNGG 2 cut(s) 984, 985
BstSFI CTRYAG 3 cut(s) 99, 246, 480
BstV1I GCAGC 4 cut(s) 85, 355, 494, 791
BstX2I RGATCY 4 cut(s) 254, 331, 619, 1056
BstYI RGATCY 4 cut(s) 254, 331, 619, 1056
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 963
BtsCI GGATG 2 cut(s) 938, 1033
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 581, 672
Cac8I GCNNGC 2 cut(s) 321, 757
Cfr10I RCCGGY 2 cut(s) 319, 362
Cfr13I GGNCC 1 cut(s) 962
Cfr9I CCCGGG 1 cut(s) 985
Csp6I GTAC 4 cut(s) 104, 698, 990, 1012
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 1 cut(s) 737
CviJI RGCY 9 cut(s) 5, 244, 323, 346, 506, 525, 802, 963, 1085
CviKI_1 RGCY 9 cut(s) 5, 244, 323, 346, 506, 525, 802, 963, 1085
CviQI GTAC 4 cut(s) 104, 698, 990, 1012
DdeI CTNAG 3 cut(s) 584, 798, 1086
Eam1104I CTCTTC 2 cut(s) 738, 794
EarI CTCTTC 2 cut(s) 738, 794
Eco130I CCWWGG 2 cut(s) 19, 426
Eco57I CTGAAG 2 cut(s) 363, 624
Eco88I CYCGRG 1 cut(s) 985
EcoT14I CCWWGG 2 cut(s) 19, 426
ErhI CCWWGG 2 cut(s) 19, 426
FaeI CATG 1 cut(s) 740
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 1 cut(s) 736
Fnu4HI GCNGC 4 cut(s) 99, 344, 483, 780
FokI GGATG 2 cut(s) 945, 1020
Fsp4HI GCNGC 4 cut(s) 99, 344, 483, 780
FspBI CTAG 3 cut(s) 131, 258, 692
GluI GCNGC 4 cut(s) 99, 344, 483, 780
HaeIII GGCC 1 cut(s) 963
HapII CCGG 3 cut(s) 320, 363, 986
Hin1II CATG 1 cut(s) 740
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 2 cut(s) 152, 818
HpaII CCGG 3 cut(s) 320, 363, 986
HphI GGTGA 1 cut(s) 1054
Hpy166II GTNNAC 2 cut(s) 370, 698
Hpy188I TCNGA 5 cut(s) 149, 280, 336, 643, 1009
Hpy188III TCNNGA 7 cut(s) 329, 350, 390, 401, 625, 839, 953
Hpy8I GTNNAC 2 cut(s) 370, 698
HpyAV CCTTC 1 cut(s) 1039
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4V TGCA 5 cut(s) 101, 343, 482, 560, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 671
HpyF3I CTNAG 3 cut(s) 584, 798, 1086
Hsp92II CATG 1 cut(s) 740
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 671, 807
Lsp1109I GCAGC 4 cut(s) 85, 355, 494, 791
LweI GCATC 1 cut(s) 923
MaeI CTAG 3 cut(s) 131, 258, 692
MaeIII GTNAC 2 cut(s) 971, 995
MboII GAAGA 6 cut(s) 30, 264, 319, 322, 725, 781
MflI RGATCY 4 cut(s) 254, 331, 619, 1056
MluCI AATT 6 cut(s) 60, 205, 413, 565, 657, 956
MmeI TCCRAC 1 cut(s) 359
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 3 cut(s) 446, 564, 630
MslI CAYNNNNRTG 3 cut(s) 90, 709, 1067
MspI CCGG 3 cut(s) 320, 363, 986
MspR9I CCNGG 2 cut(s) 986, 987
Mva1269I GAATGC 1 cut(s) 1029
MwoI GCNNNNNNNGC 2 cut(s) 662, 671
NaeI GCCGGC 1 cut(s) 321
NciI CCSGG 2 cut(s) 986, 987
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 740
NlaIV GGNNCC 3 cut(s) 124, 333, 1058
PctI GAATGC 1 cut(s) 1029
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 152, 818
PflMI CCANNNNNTGG 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 4 cut(s) 100, 345, 484, 781
PspN4I GGNNCC 3 cut(s) 124, 333, 1058
PspPI GGNCC 1 cut(s) 962
PstI CTGCAG 2 cut(s) 103, 484
PsuI RGATCY 4 cut(s) 254, 331, 619, 1056
RsaI GTAC 4 cut(s) 105, 699, 991, 1013
RsaNI GTAC 4 cut(s) 104, 698, 990, 1012
RseI CAYNNNNRTG 3 cut(s) 90, 709, 1067
SaqAI TTAA 3 cut(s) 446, 564, 630
SatI GCNGC 4 cut(s) 99, 344, 483, 780
Sau96I GGNCC 1 cut(s) 962
ScaI AGTACT 1 cut(s) 1013
ScrFI CCNGG 2 cut(s) 986, 987
SetI ASST 9 cut(s) 217, 348, 527, 558, 697, 804, 861, 1067, 1087
SfaNI GCATC 1 cut(s) 923
SfcI CTRYAG 3 cut(s) 99, 246, 480
SmaI CCCGGG 1 cut(s) 987
SmiMI CAYNNNNRTG 3 cut(s) 90, 709, 1067
Sse9I AATT 6 cut(s) 60, 205, 413, 565, 657, 956
SsiI CCGC 1 cut(s) 805
SspMI CTAG 3 cut(s) 131, 258, 692
StyD4I CCNGG 2 cut(s) 984, 985
StyI CCWWGG 2 cut(s) 19, 426
TaaI ACNGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 518
TasI AATT 6 cut(s) 60, 205, 413, 565, 657, 956
TatI WGTACW 2 cut(s) 697, 1011
TfiI GAWTC 2 cut(s) 152, 818
Tru1I TTAA 3 cut(s) 446, 564, 630
Tru9I TTAA 3 cut(s) 446, 564, 630
TscAI CASTG 2 cut(s) 588, 672
TseI GCWGC 4 cut(s) 98, 343, 482, 779
TspDTI ATGAA 8 cut(s) 24, 30, 144, 510, 637, 725, 873, 1022
TspMI CCCGGG 1 cut(s) 985
TspRI CASTG 2 cut(s) 588, 672
Van91I CCANNNNNTGG 1 cut(s) 218
XapI RAATTY 1 cut(s) 956
XmaI CCCGGG 1 cut(s) 985
XspI CTAG 3 cut(s) 131, 258, 692
ZrmI AGTACT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.