Prupe.7G172300_v2.0.a1

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000393
Physical Location & Seq
Forward (+)
17333734 .. 17336081
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G172300.1

Sequence Viewer

Length: 1101 bp
ATGAATTTTCTCTTCCAAAAACTTCTTCCTTCATCTAATTCATCTGTCAAAGTTTTCTTAATCATCATAGTTTTATTCTTGTACCATAATGCTGCTGCTGTGACACTACCCGAAAACGAAACAATTCCAGCAGTGATTGTTTTTGGAGATTCAATTGTGGATCCTGGCAACAACAACAATATCAGAACTATAGTCAAATGCAATTTCCCACCATATGGCAGGGACTTCATAGGGAGAAAGCCTACTGGAAGGTTTAGCAATGGAAGAGTCCCCTCAGACTTGATAGCTGAATCGGTTGGAGTGAAGAACATTTTGCCAGCTTATCTGGATCCAAGTCTGAAGGTTCAAGACCTACTTACTGGTGTAAGTTTTGCCTCAGGGGGTACAGGATATGATCCTCTGACTCCCCAAGTAGTGTCCGTCTTATCATTATCAGATCAACTAGACCTGTTCAAAAAATACCTAAGCAAGGTAAATGCAGCAGTCGGGGAGGCGAGAACCGCGACTATACTATCAAAAAGCATATACATTGTGTGCTTAGGAAGCGATGACATTGCAAACACTTATTATTCTACATCACTGAGGAGACCTCAATATGACATTCCAGCATATACAGATCTGATGATTAAATCAGCTTCAAGTTTCTTTCAGGAACTATATGACCTGGGAGCTCGAAGGATTGGCATAGTAAGCTTGCCAGCAATTGGGTGTGTGCCATCACAAAGAACACTGAATGGAGGCATAGACAAGGGGTGCTCAGACAATGCTAACCAAGCAGCAAGCCTCTTCAACTCCAAGCTCACTGCCCAAATAGATGCCTTCAACAAGAGGCTTCCAGAAGCAAGGCTTGTCTACATTGATATCTACCACACATTGCTTTCTCTCATCCAAAACCCTTCTCAATATGGATTGGAAGTGGTGAACAAAGGCTGCTGTGGAACAGGTAATATTGAGGTCAGTGTTTTGTGTACTCGTTACTCTCCAGGTACCTGCAAGGATCCATCAAAATATCTATTCTGGGACAGTTACCATCCCACAGAGAAGGCATATAAGGTTCTTGTCCCTCTGGTTTTTGATAAGCAAGTTCATAAATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

367

Amino Acids

40.17

Weight (kDa)

8.64

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 998
Acc65I GGTACC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 2 cut(s) 215, 704
AccI GTMKAC 1 cut(s) 852
AccII CGCG 1 cut(s) 503
AciI CCGC 1 cut(s) 501
AclWI GGATC 7 cut(s) 155, 168, 323, 336, 389, 992, 1005
AcsI RAATTY 2 cut(s) 4, 1091
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 4 cut(s) 83, 385, 970, 988
AfiI CCNNNNNNNGG 3 cut(s) 215, 469, 704
AgsI TTSAA 6 cut(s) 153, 347, 454, 639, 790, 823
AjnI CCWGG 3 cut(s) 163, 663, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 6 cut(s) 287, 320, 635, 671, 693, 799
AluI AGCT 6 cut(s) 287, 320, 635, 671, 693, 799
Alw21I GWGCWC 2 cut(s) 673, 758
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 7 cut(s) 155, 168, 323, 336, 389, 992, 1005
ApeKI GCWGC 5 cut(s) 92, 95, 479, 776, 930
ApoI RAATTY 2 cut(s) 4, 1091
Asp700I GAANNNNTTC 1 cut(s) 123
Asp718I GGTACC 1 cut(s) 986
AsuHPI GGTGA 1 cut(s) 931
AxyI CCTNAGG 1 cut(s) 376
BamHI GGATCC 3 cut(s) 160, 328, 997
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 673
Bbv12I GWGCWC 2 cut(s) 673, 758
BbvI GCAGC 5 cut(s) 79, 82, 491, 788, 917
BccI CCATC 3 cut(s) 724, 1009, 1038
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 3 cut(s) 165, 665, 984
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 616
BisI GCNGC 5 cut(s) 93, 96, 480, 777, 931
BlsI GCNGC 5 cut(s) 94, 97, 481, 778, 932
Bme1390I CCNGG 3 cut(s) 165, 665, 984
BmiI GGNNCC 4 cut(s) 162, 330, 988, 999
BmrFI CCNGG 3 cut(s) 165, 665, 984
BmsI GCATC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 574, 606
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 2 cut(s) 464, 538
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 664
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 469, 704
Bse1I ACTGG 2 cut(s) 250, 364
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 3 cut(s) 265, 552, 872
BseBI CCWGG 3 cut(s) 165, 665, 984
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 2 cut(s) 885, 1030
BseLI CCNNNNNNNGG 3 cut(s) 215, 469, 704
BseMI GCAATG 3 cut(s) 265, 552, 872
BseMII CTCAG 4 cut(s) 288, 390, 572, 771
BseNI ACTGG 2 cut(s) 250, 364
BseRI GAGGAG 1 cut(s) 598
BseXI GCAGC 5 cut(s) 79, 82, 491, 788, 917
Bsh1236I CGCG 1 cut(s) 503
BshNI GGYRCC 1 cut(s) 986
BsiHKAI GWGCWC 2 cut(s) 673, 758
BslFI GGGAC 4 cut(s) 236, 254, 1034, 1046
BslI CCNNNNNNNGG 3 cut(s) 215, 469, 704
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 4 cut(s) 236, 254, 1034, 1046
Bso31I GGTCTC 1 cut(s) 580
Bsp1286I GDGCHC 2 cut(s) 673, 758
Bsp143I GATC 6 cut(s) 160, 328, 394, 436, 616, 997
BspACI CCGC 1 cut(s) 501
BspCNI CTCAG 4 cut(s) 287, 389, 573, 770
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 4 cut(s) 162, 330, 988, 999
BspMI ACCTGC 1 cut(s) 998
BspPI GGATC 7 cut(s) 155, 168, 323, 336, 389, 992, 1005
BspT107I GGYRCC 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 580
BsrDI GCAATG 3 cut(s) 265, 552, 872
BsrI ACTGG 2 cut(s) 250, 364
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 6 cut(s) 160, 328, 394, 436, 616, 997
Bst2UI CCWGG 3 cut(s) 165, 665, 984
Bst4CI ACNGT 1 cut(s) 1025
Bst6I CTCTTC 3 cut(s) 17, 259, 791
BstC8I GCNNGC 4 cut(s) 318, 695, 699, 781
BstDEI CTNAG 6 cut(s) 274, 376, 464, 538, 581, 757
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 885, 1030
BstFNI CGCG 1 cut(s) 503
BstKTI GATC 6 cut(s) 163, 331, 397, 439, 619, 1000
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 6 cut(s) 160, 328, 394, 436, 616, 997
BstMWI GCNNNNNNNGC 4 cut(s) 500, 543, 690, 773
BstNI CCWGG 3 cut(s) 165, 665, 984
BstSCI CCNGG 3 cut(s) 163, 663, 982
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 5 cut(s) 79, 82, 491, 788, 917
BstX2I RGATCY 4 cut(s) 160, 328, 616, 997
BstYI RGATCY 4 cut(s) 160, 328, 616, 997
Bsu36I CCTNAGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 885, 1030
BtsI GCAGTG 2 cut(s) 138, 801
BtsIMutI CAGTG 5 cut(s) 138, 578, 728, 801, 964
BveI ACCTGC 1 cut(s) 998
Cac8I GCNNGC 4 cut(s) 318, 695, 699, 781
Csp6I GTAC 4 cut(s) 82, 384, 969, 987
CviQI GTAC 4 cut(s) 82, 384, 969, 987
DdeI CTNAG 6 cut(s) 274, 376, 464, 538, 581, 757
DpnI GATC 6 cut(s) 162, 330, 396, 438, 618, 999
DpnII GATC 6 cut(s) 160, 328, 394, 436, 616, 997
Eam1104I CTCTTC 3 cut(s) 17, 259, 791
EarI CTCTTC 3 cut(s) 17, 259, 791
Ecl136II GAGCTC 1 cut(s) 671
Eco24I GRGCYC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 580
Eco32I GATATC 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRII CCWGG 3 cut(s) 163, 663, 982
EcoRV GATATC 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 673
FalI AAGNNNNNCTT 4 cut(s) 339, 371, 831, 863
FaqI GGGAC 4 cut(s) 236, 254, 1034, 1046
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 852
Fnu4HI GCNGC 5 cut(s) 93, 96, 480, 777, 931
FokI GGATG 2 cut(s) 872, 1017
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 5 cut(s) 93, 96, 480, 777, 931
FspBI CTAG 1 cut(s) 443
GluI GCNGC 5 cut(s) 93, 96, 480, 777, 931
GsuI CTGGAG 1 cut(s) 966
HindIII AAGCTT 1 cut(s) 691
HinfI GANTC 4 cut(s) 149, 267, 290, 403
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 3 cut(s) 853, 922, 969
Hpy188I TCNGA 8 cut(s) 185, 277, 339, 402, 436, 621, 760, 1100
Hpy188III TCNNGA 4 cut(s) 326, 347, 650, 836
Hpy8I GTNNAC 3 cut(s) 853, 922, 969
HpyAV CCTTC 7 cut(s) 39, 243, 334, 669, 829, 906, 1036
HpyCH4III ACNGT 1 cut(s) 1025
HpyCH4V TGCA 4 cut(s) 201, 479, 557, 993
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 543, 690, 773
HpyF3I CTNAG 6 cut(s) 274, 376, 464, 538, 581, 757
KpnI GGTACC 1 cut(s) 990
Kzo9I GATC 6 cut(s) 160, 328, 394, 436, 616, 997
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 5 cut(s) 79, 82, 491, 788, 917
LweI GCATC 1 cut(s) 805
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 3 cut(s) 100, 974, 1025
MalI GATC 6 cut(s) 162, 330, 396, 438, 618, 999
MboI GATC 6 cut(s) 160, 328, 394, 436, 616, 997
MboII GAAGA 6 cut(s) 4, 17, 276, 316, 778, 1087
MfeI CAATTG 2 cut(s) 153, 702
MflI RGATCY 4 cut(s) 160, 328, 616, 997
MhlI GDGCHC 2 cut(s) 673, 758
MluCI AATT 7 cut(s) 4, 37, 123, 153, 202, 702, 1091
MlyI GAGTC 2 cut(s) 276, 397
MmeI TCCRAC 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 59, 627
MspR9I CCNGG 3 cut(s) 165, 665, 984
MunI CAATTG 2 cut(s) 153, 702
MvaI CCWGG 3 cut(s) 165, 665, 984
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 4 cut(s) 500, 543, 690, 773
NdeI CATATG 1 cut(s) 214
NdeII GATC 6 cut(s) 160, 328, 394, 436, 616, 997
NlaIV GGNNCC 4 cut(s) 162, 330, 988, 999
NmuCI GTSAC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 149, 290
PflMI CCANNNNNTGG 2 cut(s) 215, 704
PkrI GCNGC 5 cut(s) 94, 97, 481, 778, 932
PleI GAGTC 2 cut(s) 275, 397
PpsI GAGTC 2 cut(s) 275, 397
Psp124BI GAGCTC 1 cut(s) 673
Psp6I CCWGG 3 cut(s) 163, 663, 982
PspGI CCWGG 3 cut(s) 163, 663, 982
PspN4I GGNNCC 4 cut(s) 162, 330, 988, 999
PsuI RGATCY 4 cut(s) 160, 328, 616, 997
RsaI GTAC 4 cut(s) 83, 385, 970, 988
RsaNI GTAC 4 cut(s) 82, 384, 969, 987
SacI GAGCTC 1 cut(s) 673
SaqAI TTAA 2 cut(s) 59, 627
SatI GCNGC 5 cut(s) 93, 96, 480, 777, 931
Sau3AI GATC 6 cut(s) 160, 328, 394, 436, 616, 997
SchI GAGTC 2 cut(s) 276, 397
ScrFI CCNGG 3 cut(s) 165, 665, 984
SduI GDGCHC 2 cut(s) 673, 758
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 1 cut(s) 189
Sse9I AATT 7 cut(s) 4, 37, 123, 153, 202, 702, 1091
SsiI CCGC 1 cut(s) 501
SspI AATATT 1 cut(s) 949
SspMI CTAG 1 cut(s) 443
SstI GAGCTC 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 163, 663, 982
TaaI ACNGT 1 cut(s) 1025
TaqI TCGA 1 cut(s) 673
TasI AATT 7 cut(s) 4, 37, 123, 153, 202, 702, 1091
TatI WGTACW 1 cut(s) 968
TfiI GAWTC 2 cut(s) 149, 290
Tru1I TTAA 2 cut(s) 59, 627
Tru9I TTAA 2 cut(s) 59, 627
TscAI CASTG 5 cut(s) 138, 585, 735, 808, 964
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 5 cut(s) 92, 95, 479, 776, 930
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 17, 21, 30, 217, 1076
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 5 cut(s) 138, 585, 735, 808, 964
Van91I CCANNNNNTGG 2 cut(s) 215, 704
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 2 cut(s) 4, 1091
XmiI GTMKAC 1 cut(s) 852
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.