AT1G20120

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000393
Physical Location & Seq
Forward (+)
6975339 .. 6977267
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20120.1

Sequence Viewer

Length: 1209 bp
ATGTTGCAAGATAGAGTTTCTGGTTCTTTGTCTAGTTCGAAAATATCTCGATGTGTTTTGTTTCTCTCACTCTTTTGTTTCTTCCTCTTGACGATGCATGCTTCAGCAAACCGCTTACAGCGAGTTCCAAATCCAGGGCCTTCCCCGGCACCAGAGCCTAAGCCATGTCCGAGTCCAGGGCCAAACCCCGCACCAGCGACAACTAAGAGGACACATAACACTACGTTTCCGGCGATCTTCGCCTTTGGGGATTCGATCTTAGACACAGGAAATAACGATTATATTTTGACCTTGATCAAAGCTAATTTTCTTCCATATGGCATGAATTTTCCAGATAAAGTTCCCACCGGCAGATTTTGCAACGGCAAAATCCCTTCGGACTTTATCGCGGATTATATAGGAGTAAAACCAGTTGTACCGGCATATTTGAGACCGGGACTGACCCAGGAAGATTTGCTCACTGGTGTATCCTTTGCTTCGGGTGGTTCTGGCTATGATCCTTTGACACCAATCGTAGTAAGTGCGATACCGATGTCAAAACAATTGACATACTTTCAAGAATACATAGAGAAAGTGAAAGGCTTTGTGGGAAAAGAGAAAGCCGAGCACATAATATCCAAAGGCCTAGCCATTGTGGTAGCGGGCAGCGACGATCTGGCCAATACCTACTATGGTGAACACTTAGAGGAATTCTTGTATGACATAGATACATATACCTCTTTTATGGCTAGCTCTGCTGCAAGTTTTGCTATGCAACTATATGAATCAGGAGCAAAAAAAATAGGATTTATTGGTGTTTCTCCGATCGGGTGTATACCGATACAGAGAACCACAAGAGGAGGACTTAAAAGAAAATGTGCTGATGAACTCAACTTTGCAGCTCAGCTTTTTAATTCCAAACTCTCCACAAGTTTGAACGAATTGGCTAAAACCATGAAAAATACCACATTGGTGTATATTGACATCTACTCTTCTTTCAATGATATGATTCAAAACCCCAAAAAATATGGATTTGATGAGATTGATAGAGGATGTTGCGGGACGGGGCTACTCGAATTAGGTCCGCTTTGCAACAAATATACATCACTTCTTTGCAAGAATGTGTCTTCTTTTATGTTTTGGGACTCTTACCATCCAACGGAAAGAGCTTATAAAATCTTAAGCCAAAAGTTTGTAGAGAATGACATGGGCCCTTTCTATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

402

Amino Acids

44.22

Weight (kDa)

7.48

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 79 - 390 4.1e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AccB1I GGYRCC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 814
AccII CGCG 1 cut(s) 389
AciI CCGC 6 cut(s) 112, 189, 389, 641, 1038, 1064
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 325, 689
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 3 cut(s) 134, 176, 1138
AflII CTTAAG 1 cut(s) 1159
AgsI TTSAA 4 cut(s) 557, 916, 979, 992
AjnI CCWGG 3 cut(s) 133, 175, 444
AleI CACNNNNGTG 1 cut(s) 950
AluBI AGCT 5 cut(s) 302, 732, 881, 886, 1148
AluI AGCT 5 cut(s) 302, 732, 881, 886, 1148
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 491
AoxI GGCC 5 cut(s) 137, 179, 622, 657, 1189
ApaI GGGCCC 1 cut(s) 1193
ApeKI GCWGC 3 cut(s) 645, 737, 878
ApoI RAATTY 2 cut(s) 325, 689
AspS9I GGNCC 5 cut(s) 137, 179, 1061, 1189, 1190
AsuC2I CCSGG 2 cut(s) 146, 435
AsuHPI GGTGA 1 cut(s) 686
AsuII TTCGAA 1 cut(s) 38
AsuNHI GCTAGC 1 cut(s) 728
AvaII GGWCC 1 cut(s) 1061
BaeGI GKGCMC 1 cut(s) 1193
BaeI ACNNNNGTAYC 4 cut(s) 450, 483, 518, 551
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 1193
BbsI GAAGAC 1 cut(s) 1098
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 657, 724, 890
BccI CCATC 1 cut(s) 1140
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 3 cut(s) 135, 177, 446
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 2 cut(s) 146, 435
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 3 cut(s) 33, 626, 729
BfrI CTTAAG 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 3 cut(s) 646, 738, 879
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 3 cut(s) 647, 739, 880
Bme1390I CCNGG 5 cut(s) 135, 146, 177, 435, 446
Bme18I GGWCC 1 cut(s) 1061
BmgT120I GGNCC 5 cut(s) 137, 179, 1061, 1189, 1190
BmiI GGNNCC 2 cut(s) 150, 1191
BmrFI CCNGG 5 cut(s) 135, 146, 177, 435, 446
BmsI GCATC 1 cut(s) 84
BmtI GCTAGC 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 1098
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 882
Bpu14I TTCGAA 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 146, 435
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 4 cut(s) 134, 144, 176, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 176, 1138
Bse118I RCCGGY 2 cut(s) 347, 418
Bse1I ACTGG 2 cut(s) 410, 466
BseBI CCWGG 3 cut(s) 135, 177, 446
BseDI CCNNGG 4 cut(s) 134, 144, 176, 444
BseGI GGATG 2 cut(s) 1037, 1132
BseLI CCNNNNNNNGG 3 cut(s) 134, 176, 1138
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 2 cut(s) 410, 466
BseRI GAGGAG 1 cut(s) 852
BseSI GKGCMC 1 cut(s) 1193
BseXI GCAGC 3 cut(s) 657, 724, 890
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 5 cut(s) 139, 181, 624, 659, 1191
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 5 cut(s) 146, 230, 348, 419, 434
BslFI GGGAC 3 cut(s) 450, 1054, 1136
BslI CCNNNNNNNGG 3 cut(s) 134, 176, 1138
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 3 cut(s) 450, 1054, 1136
BsnI GGCC 5 cut(s) 139, 181, 624, 659, 1191
Bso31I GGTCTC 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 38
Bsp120I GGGCCC 1 cut(s) 1189
Bsp1286I GDGCHC 2 cut(s) 609, 1193
Bsp143I GATC 6 cut(s) 234, 255, 294, 496, 652, 804
Bsp1720I GCTNAGC 1 cut(s) 882
BspACI CCGC 6 cut(s) 112, 189, 389, 641, 1038, 1064
BspANI GGCC 5 cut(s) 139, 181, 624, 659, 1191
BspCNI CTCAG 1 cut(s) 895
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 150, 1191
BspOI GCTAGC 1 cut(s) 732
BspPI GGATC 1 cut(s) 491
BspT104I TTCGAA 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 1159
BspTNI GGTCTC 1 cut(s) 424
BsrFI RCCGGY 2 cut(s) 347, 418
BsrI ACTGG 2 cut(s) 410, 466
BssAI RCCGGY 2 cut(s) 347, 418
BssECI CCNNGG 4 cut(s) 134, 144, 176, 444
BssMI GATC 6 cut(s) 234, 255, 294, 496, 652, 804
BssNAI GTATAC 1 cut(s) 815
Bst1107I GTATAC 1 cut(s) 815
Bst2UI CCWGG 3 cut(s) 135, 177, 446
Bst6I CTCTTC 1 cut(s) 976
BstAFI CTTAAG 1 cut(s) 1159
BstAPI GCANNNNNTGC 2 cut(s) 357, 746
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 99, 643, 730
BstDEI CTNAG 5 cut(s) 159, 204, 259, 682, 882
BstF5I GGATG 2 cut(s) 1037, 1132
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 6 cut(s) 237, 258, 297, 499, 655, 807
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 6 cut(s) 234, 255, 294, 496, 652, 804
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 4 cut(s) 239, 357, 734, 746
BstNI CCWGG 3 cut(s) 135, 177, 446
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 133, 144, 175, 433, 444
BstSLI GKGCMC 1 cut(s) 1193
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 657, 724, 890
BstV2I GAAGAC 1 cut(s) 1098
BstZ17I GTATAC 1 cut(s) 815
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 5 cut(s) 139, 181, 624, 659, 1191
BtsCI GGATG 2 cut(s) 1037, 1132
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 3 cut(s) 99, 643, 730
Cfr10I RCCGGY 2 cut(s) 347, 418
Cfr13I GGNCC 5 cut(s) 137, 179, 1061, 1189, 1190
Csp6I GTAC 1 cut(s) 416
CviAII CATG 5 cut(s) 98, 165, 322, 934, 1186
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 5 cut(s) 159, 204, 259, 682, 882
DpnI GATC 6 cut(s) 236, 257, 296, 498, 654, 806
DpnII GATC 6 cut(s) 234, 255, 294, 496, 652, 804
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 976
EarI CTCTTC 1 cut(s) 976
Eco147I AGGCCT 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 1193
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 1061
Eco57I CTGAAG 1 cut(s) 87
EcoO109I RGGNCCY 2 cut(s) 137, 1190
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 3 cut(s) 133, 175, 444
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 1193
FaeI CATG 5 cut(s) 101, 168, 325, 937, 1189
FaqI GGGAC 3 cut(s) 450, 1054, 1136
FatI CATG 5 cut(s) 97, 164, 321, 933, 1185
FauI CCCGC 3 cut(s) 196, 634, 1031
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 646, 738, 879
FokI GGATG 2 cut(s) 1044, 1119
FriOI GRGCYC 1 cut(s) 1193
Fsp4HI GCNGC 3 cut(s) 646, 738, 879
FspBI CTAG 3 cut(s) 33, 626, 729
GluI GCNGC 3 cut(s) 646, 738, 879
HaeIII GGCC 5 cut(s) 139, 181, 624, 659, 1191
HapII CCGG 5 cut(s) 146, 230, 348, 419, 434
Hin1II CATG 5 cut(s) 101, 168, 325, 937, 1189
HinfI GANTC 5 cut(s) 172, 251, 764, 988, 1124
HpaII CCGG 5 cut(s) 146, 230, 348, 419, 434
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 2 cut(s) 677, 815
Hpy188I TCNGA 3 cut(s) 171, 379, 804
Hpy188III TCNNGA 5 cut(s) 48, 88, 332, 557, 768
Hpy8I GTNNAC 2 cut(s) 677, 815
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 2 cut(s) 150, 384
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 8 cut(s) 7, 97, 360, 740, 754, 878, 1071, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 357, 734, 746
HpyF3I CTNAG 5 cut(s) 159, 204, 259, 682, 882
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 5 cut(s) 101, 168, 325, 937, 1189
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 6 cut(s) 234, 255, 294, 496, 652, 804
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 3 cut(s) 657, 724, 890
LweI GCATC 1 cut(s) 84
MaeI CTAG 3 cut(s) 33, 626, 729
MaeII ACGT 1 cut(s) 224
MalI GATC 6 cut(s) 236, 257, 296, 498, 654, 806
MboI GATC 6 cut(s) 234, 255, 294, 496, 652, 804
MboII GAAGA 6 cut(s) 73, 229, 302, 461, 963, 1098
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 2 cut(s) 609, 1193
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 8 cut(s) 304, 325, 542, 689, 892, 920, 1055, 1204
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 2 cut(s) 181, 1118
MmeI TCCRAC 1 cut(s) 1160
MnlI CCTC 7 cut(s) 95, 201, 679, 727, 830, 833, 1022
Mox20I TGGCCA 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 99
MscI TGGCCA 1 cut(s) 659
MseI TTAA 4 cut(s) 846, 891, 1160, 1207
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 1159
MspI CCGG 5 cut(s) 146, 230, 348, 419, 434
MspR9I CCNGG 5 cut(s) 135, 146, 177, 435, 446
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 3 cut(s) 135, 177, 446
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 239, 357, 734, 746
NciI CCSGG 2 cut(s) 146, 435
NdeI CATATG 1 cut(s) 316
NdeII GATC 6 cut(s) 234, 255, 294, 496, 652, 804
NheI GCTAGC 1 cut(s) 728
NlaIII CATG 5 cut(s) 101, 168, 325, 937, 1189
NlaIV GGNNCC 2 cut(s) 150, 1191
NmeAIII GCCGAG 1 cut(s) 628
NsiI ATGCAT 1 cut(s) 99
NspI RCATGY 1 cut(s) 101
NspV TTCGAA 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 950
PaeI GCATGC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfeI GAWTC 3 cut(s) 251, 764, 988
PkrI GCNGC 3 cut(s) 647, 739, 880
Ple19I CGATCG 1 cut(s) 807
PleI GAGTC 2 cut(s) 180, 1118
PpsI GAGTC 2 cut(s) 180, 1118
PsiI TTATAA 1 cut(s) 1152
Psp6I CCWGG 3 cut(s) 133, 175, 444
PspGI CCWGG 3 cut(s) 133, 175, 444
PspN4I GGNNCC 2 cut(s) 150, 1191
PspOMI GGGCCC 1 cut(s) 1189
PspPI GGNCC 5 cut(s) 137, 179, 1061, 1189, 1190
PvuI CGATCG 1 cut(s) 807
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 950
SaqAI TTAA 4 cut(s) 846, 891, 1160, 1207
SatI GCNGC 3 cut(s) 646, 738, 879
Sau3AI GATC 6 cut(s) 234, 255, 294, 496, 652, 804
Sau96I GGNCC 5 cut(s) 137, 179, 1061, 1189, 1190
SchI GAGTC 2 cut(s) 181, 1118
ScrFI CCNGG 5 cut(s) 135, 146, 177, 435, 446
SduI GDGCHC 2 cut(s) 609, 1193
SfaNI GCATC 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 1061
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SphI GCATGC 1 cut(s) 101
Sse9I AATT 8 cut(s) 304, 325, 542, 689, 892, 920, 1055, 1204
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 6 cut(s) 112, 189, 389, 641, 1038, 1064
SspMI CTAG 3 cut(s) 33, 626, 729
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 5 cut(s) 133, 144, 175, 433, 444
TaiI ACGT 1 cut(s) 227
TaqI TCGA 4 cut(s) 38, 49, 254, 1053
TasI AATT 8 cut(s) 304, 325, 542, 689, 892, 920, 1055, 1204
TfiI GAWTC 3 cut(s) 251, 764, 988
Tru1I TTAA 4 cut(s) 846, 891, 1160, 1207
Tru9I TTAA 4 cut(s) 846, 891, 1160, 1207
TscAI CASTG 1 cut(s) 466
TseI GCWGC 3 cut(s) 645, 737, 878
TspDTI ATGAA 4 cut(s) 338, 777, 879, 950
TspGWI ACGGA 1 cut(s) 1154
TspRI CASTG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 1159
VpaK11BI GGWCC 1 cut(s) 1061
XapI RAATTY 2 cut(s) 325, 689
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 814
XspI CTAG 3 cut(s) 33, 626, 729
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.