Rorug02G0075200

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000393
Physical Location & Seq
Reverse (-)
5953079 .. 5956235
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0075200.1

Sequence Viewer

Length: 954 bp
ATGCCCAAATGTGTTGGAATTGGACTCGGGCTTCCTCATCGACTTCCATATTTGGCGAGTGTTTATTCTTGTTCTTCTTCTTATTCAACCACTAGTGCAGTTGGGTCTGTCCCTAATCTTGCAAAAGTAGTAAGCAAATGGAACAGTGGAGGTAGAGCACCTCGGCGTCTGGTTTTGGGCCTTGCAGCTTCATTTTGGGCTCAGTTGATGAACATGTCTGGTGCTATTGGCGGCAAGGCTTTCACTGCCTCTGCCAGGTTGAAGAGTGGTCCTTCCTTTGAAGAGATATTGAAGAATGTGGATTGGCCGGAGCAGATTCCTTACAAGCCGGAGGATTTCCAGCGCTATGATGAGTCACCAGATACATTGTTTTATGAGAGTCCGCGCTTTGTGACACATATTGATGATCCAGCCATTGTGGCACTGACTAAGTACTATTCTAAGGTGTTTCCGCCTAGCAACACTCCAGGAGTAAGCATGCTGGACATGTGTAGCAGTTGGGTTAGTCACTTTCCACCAGGATACAAGCAAGAGCGAATAGTTGGAATGGGAATGAATGAAGCAGAGCTAAAGGCGAATCCAGTTTTGACAGAGTATGTTCTTCAAGACTTGAATGTCAACCCTAAACTTCCCTTTGAAGATAATTCTTTTGATGTGATAACTAATGTGGTTAGTGTTGATTATATAAACAAGCCTATTGAAGTATTCAAGGAAATGTGCCGGATTCTTAAGCCAGGGGGACTTGCTATAATTAGCTTTTCCAACCGATGTTTCTGGACTAAAGCAATCTCAATCTGGACATCAACTGGTGATGCTGATCATGGTTTGATTGTTGGGTCATATTTCCACTATGCTGGAGGATTTGAACCTCCTCAGGGGGTGGATATTTCTCCCAACCCTGGACGCTCAGACCCCATGTACATTGTATACTCTAGAAAGTTATCTTCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.95

Weight (kDa)

6.95

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 191 - 251 7.2e-11 Methyltransferase domain
Methyltransf_25 PF13649 193 - 247 3.4e-06 Methyltransferase domain
Methyltransf_23 PF13489 205 - 272 6.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 927
AccII CGCG 1 cut(s) 385
AciI CCGC 3 cut(s) 231, 383, 452
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 2 cut(s) 434, 920
AfeI AGCGCT 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 255, 875, 899
AflII CTTAAG 1 cut(s) 728
AflIII ACRYGT 2 cut(s) 213, 486
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 5 cut(s) 254, 466, 517, 733, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 3 cut(s) 188, 568, 756
AluI AGCT 3 cut(s) 188, 568, 756
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 344
AoxI GGCC 2 cut(s) 178, 305
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 345, 387
AspS9I GGNCC 2 cut(s) 178, 269
AsuHPI GGTGA 2 cut(s) 348, 821
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 873
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 197
BciT130I CCWGG 5 cut(s) 256, 468, 519, 735, 900
BciVI GTATCC 1 cut(s) 515
BclI TGATCA 1 cut(s) 817
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 3 cut(s) 93, 456, 933
BfoI RGCGCY 1 cut(s) 346
BfrI CTTAAG 1 cut(s) 728
BfuI GTATCC 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 2 cut(s) 186, 232
BlsI GCNGC 2 cut(s) 187, 233
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 5 cut(s) 256, 468, 519, 735, 900
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 178, 269
BmrFI CCNGG 5 cut(s) 256, 468, 519, 735, 900
BmsI GCATC 1 cut(s) 802
BpmI CTGGAG 2 cut(s) 450, 876
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 161, 734, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 875, 899
Bse1I ACTGG 2 cut(s) 581, 811
Bse21I CCTNAGG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 5 cut(s) 256, 468, 519, 735, 900
BseDI CCNNGG 3 cut(s) 161, 734, 898
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 255, 875, 899
BseMII CTCAG 3 cut(s) 215, 887, 921
BseNI ACTGG 2 cut(s) 581, 811
BseRI GAGGAG 1 cut(s) 861
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 180, 307
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 308, 329, 721
BslFI GGGAC 2 cut(s) 95, 753
BslI CCNNNNNNNGG 3 cut(s) 255, 875, 899
BsmFI GGGAC 2 cut(s) 95, 753
BsnI GGCC 2 cut(s) 180, 307
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 160, 202
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 2 cut(s) 406, 817
BspACI CCGC 3 cut(s) 231, 383, 452
BspANI GGCC 2 cut(s) 180, 307
BspCNI CTCAG 3 cut(s) 214, 886, 920
BspFNI CGCG 1 cut(s) 385
BspPI GGATC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 2 cut(s) 581, 811
BssECI CCNNGG 3 cut(s) 161, 734, 898
BssMI GATC 2 cut(s) 406, 817
BssNAI GTATAC 1 cut(s) 928
BssNI GRCGYC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 928
Bst2UI CCWGG 5 cut(s) 256, 468, 519, 735, 900
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 257, 276
BstACI GRCGYC 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 5 cut(s) 201, 429, 441, 873, 907
BstENI CCTNNNNNAGG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 385
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 2 cut(s) 345, 387
BstKTI GATC 2 cut(s) 409, 820
BstMBI GATC 2 cut(s) 406, 817
BstMWI GCNNNNNNNGC 2 cut(s) 245, 419
BstNI CCWGG 5 cut(s) 256, 468, 519, 735, 900
BstNSI RCATGY 3 cut(s) 217, 481, 490
BstSCI CCNGG 5 cut(s) 254, 466, 517, 733, 898
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 854
BstZ17I GTATAC 1 cut(s) 928
Bsu36I CCTNAGG 1 cut(s) 873
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 180, 307
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 151, 243, 422
Cac8I GCNNGC 1 cut(s) 479
CfoI GCGC 2 cut(s) 345, 387
Cfr13I GGNCC 2 cut(s) 178, 269
CseI GACGC 2 cut(s) 155, 912
Csp6I GTAC 2 cut(s) 433, 919
CviAII CATG 5 cut(s) 214, 478, 487, 821, 916
CviQI GTAC 2 cut(s) 433, 919
DdeI CTNAG 5 cut(s) 201, 429, 441, 873, 907
DpnI GATC 2 cut(s) 408, 819
DpnII GATC 2 cut(s) 406, 817
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 257, 276
EarI CTCTTC 2 cut(s) 257, 276
EciI GGCGGA 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoRII CCWGG 5 cut(s) 254, 466, 517, 733, 898
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 5 cut(s) 217, 481, 490, 824, 919
FaqI GGGAC 2 cut(s) 95, 753
FatI CATG 5 cut(s) 213, 477, 486, 820, 915
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 2 cut(s) 186, 232
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 186, 232
FspBI CTAG 3 cut(s) 93, 456, 933
GlaI GCGC 2 cut(s) 344, 386
GluI GCNGC 2 cut(s) 186, 232
GsuI CTGGAG 2 cut(s) 450, 876
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 2 cut(s) 180, 307
HapII CCGG 3 cut(s) 308, 329, 721
HgaI GACGC 2 cut(s) 155, 912
HhaI GCGC 2 cut(s) 345, 387
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 5 cut(s) 217, 481, 490, 824, 919
Hin6I GCGC 2 cut(s) 343, 385
HinP1I GCGC 2 cut(s) 343, 385
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 6 cut(s) 24, 316, 353, 379, 577, 724
HpaII CCGG 3 cut(s) 308, 329, 721
HphI GGTGA 2 cut(s) 348, 821
Hpy166II GTNNAC 2 cut(s) 619, 928
Hpy188I TCNGA 1 cut(s) 910
Hpy188III TCNNGA 4 cut(s) 605, 775, 796, 933
Hpy8I GTNNAC 2 cut(s) 619, 928
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 98, 122, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 419
HpyF3I CTNAG 5 cut(s) 201, 429, 441, 873, 907
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 5 cut(s) 217, 481, 490, 824, 919
HspAI GCGC 2 cut(s) 343, 385
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 2 cut(s) 406, 817
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 802
MaeI CTAG 3 cut(s) 93, 456, 933
MaeIII GTNAC 3 cut(s) 354, 391, 506
MalI GATC 2 cut(s) 408, 819
MboI GATC 2 cut(s) 406, 817
MboII GAAGA 8 cut(s) 66, 69, 274, 293, 304, 593, 650, 936
MhlI GDGCHC 2 cut(s) 160, 202
MluCI AATT 3 cut(s) 18, 643, 750
MlyI GAGTC 3 cut(s) 18, 362, 388
MmeI TCCRAC 2 cut(s) 523, 786
MnlI CCTC 8 cut(s) 45, 143, 171, 259, 325, 851, 879, 882
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 402
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 3 cut(s) 308, 329, 721
MspR9I CCNGG 5 cut(s) 256, 468, 519, 735, 900
MvaI CCWGG 5 cut(s) 256, 468, 519, 735, 900
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 245, 419
NdeII GATC 2 cut(s) 406, 817
NlaIII CATG 5 cut(s) 217, 481, 490, 824, 919
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 3 cut(s) 354, 391, 506
NspI RCATGY 3 cut(s) 217, 481, 490
PaeI GCATGC 1 cut(s) 481
PciI ACATGT 2 cut(s) 213, 486
PfeI GAWTC 3 cut(s) 316, 577, 724
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 2 cut(s) 187, 233
PleI GAGTC 3 cut(s) 18, 361, 387
PpsI GAGTC 3 cut(s) 18, 361, 387
PscI ACATGT 2 cut(s) 213, 486
Psp6I CCWGG 5 cut(s) 254, 466, 517, 733, 898
PspGI CCWGG 5 cut(s) 254, 466, 517, 733, 898
PspPI GGNCC 2 cut(s) 178, 269
RsaI GTAC 2 cut(s) 434, 920
RsaNI GTAC 2 cut(s) 433, 919
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 186, 232
Sau3AI GATC 2 cut(s) 406, 817
Sau96I GGNCC 2 cut(s) 178, 269
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 3 cut(s) 18, 362, 388
ScrFI CCNGG 5 cut(s) 256, 468, 519, 735, 900
SduI GDGCHC 2 cut(s) 160, 202
SetI ASST 8 cut(s) 154, 163, 190, 260, 447, 570, 758, 871
SfaNI GCATC 1 cut(s) 802
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SpeI ACTAGT 1 cut(s) 92
SphI GCATGC 1 cut(s) 481
Sse9I AATT 3 cut(s) 18, 643, 750
SsiI CCGC 3 cut(s) 231, 383, 452
SspMI CTAG 3 cut(s) 93, 456, 933
StyD4I CCNGG 5 cut(s) 254, 466, 517, 733, 898
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 40
TasI AATT 3 cut(s) 18, 643, 750
TatI WGTACW 2 cut(s) 432, 918
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 3 cut(s) 316, 577, 724
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 3 cut(s) 151, 250, 429
TseFI GTSAC 3 cut(s) 354, 391, 506
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 3 cut(s) 354, 391, 506
TspDTI ATGAA 4 cut(s) 180, 224, 569, 573
TspRI CASTG 3 cut(s) 151, 250, 429
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 932
XceI RCATGY 3 cut(s) 217, 481, 490
XmiI GTMKAC 1 cut(s) 927
XspI CTAG 3 cut(s) 93, 456, 933
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.