Rmu_co8160810.1_g000001

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8160810.1
OG0000393
Physical Location & Seq
Reverse (-)
2 .. 662
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8160810.1_g000001.1.cds

Sequence Viewer

Length: 335 bp
agagggtgttcagccaaagccaatcgagcagctagcctcttcaactccaagctctcttccctaatagagtccctcaataagaagcttccagaagcaaagtttgtctactttgatatctataatccattggtttcaatcatccaaaatccttctaaatatggatttgaagtggtgaataaagggtgctgcggaactggaaacatagaggtcagcattctttgtactcgtttctctctgggcacttgcagcgatccatcgaaatacatattctgggacagttaccatcccacagagaaggcatacaagacccttgtccccatggctttcgataagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

9.0

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 245
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 3 cut(s) 43, 135, 167
AluBI AGCT 3 cut(s) 32, 52, 85
AluI AGCT 3 cut(s) 32, 52, 85
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 29, 186, 246
AsuHPI GGTGA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 41, 173, 258
BccI CCATC 2 cut(s) 262, 291
BfaI CTAG 1 cut(s) 33
BisI GCNGC 3 cut(s) 30, 187, 247
BlsI GCNGC 3 cut(s) 31, 188, 248
BmtI GCTAGC 1 cut(s) 36
BoxI GACNNNNGTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 138, 283
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 41, 173, 258
BslFI GGGAC 3 cut(s) 55, 287, 299
BsmFI GGGAC 3 cut(s) 55, 287, 299
BsmI GAATGC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 189
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 44, 61
BstC8I GCNNGC 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 138, 283
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 26, 246
BstPAI GACNNNNGTC 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 41, 173, 258
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 138, 283
Cac8I GCNNGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 319
CviJI RGCY 7 cut(s) 14, 20, 32, 36, 52, 85, 323
CviKI_1 RGCY 7 cut(s) 14, 20, 32, 36, 52, 85, 323
CviQI GTAC 1 cut(s) 222
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 44, 61
EarI CTCTTC 2 cut(s) 44, 61
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 322
FaiI YATR 6 cut(s) 120, 159, 203, 266, 301, 320
FaqI GGGAC 3 cut(s) 55, 287, 299
FatI CATG 1 cut(s) 318
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 30, 187, 247
FokI GGATG 2 cut(s) 125, 270
Fsp4HI GCNGC 3 cut(s) 30, 187, 247
FspBI CTAG 1 cut(s) 33
GluI GCNGC 3 cut(s) 30, 187, 247
Hin1II CATG 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 68
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 159, 289
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 246
Hsp92II CATG 1 cut(s) 322
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 102, 180, 221, 256
Lsp1109I GCAGC 3 cut(s) 41, 173, 258
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 31, 48
MhlI GDGCHC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 47, 83, 199
Mva1269I GAATGC 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 26, 246
NcoI CCATGG 1 cut(s) 318
NdeII GATC 1 cut(s) 250
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 322
PctI GAATGC 1 cut(s) 213
PkrI GCNGC 3 cut(s) 31, 188, 248
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 311
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 3 cut(s) 30, 187, 247
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 242
SetI ASST 4 cut(s) 34, 54, 87, 210
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 25, 257, 327
TatI WGTACW 1 cut(s) 221
TseI GCWGC 3 cut(s) 29, 186, 246
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.