Rh2CG330100

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000393
Physical Location & Seq
Reverse (-)
43106379 .. 43108093
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG330100.1

Sequence Viewer

Length: 948 bp
ATGGCTTTTCTCTCCCAAATACTTGTTCCTTCATCTTCATCTGTCGAAATTTTCTCAATCATTGCAGTCATTTTCCTCTCCCATAATGTTGCTGCAGTAACACCAGCCACAAATAAAACAACTAGAGCAGTTTTTACTTTCGGAGATTCAATAATGGACACGGGCAATAATGACTACATCATTTCTATAGCCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTGCGGGAGGAAAGCCTACTGGAAGATTTAGCAATGGAAAAGTCGCCTCAGATTTTGCTGCTGAAATGTTTGGAGTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAAATTGCAGCTTGAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGATCAGGATATGACCCTCTCACTGCCAAATTACTTTCTGTCTTGTCACTACCAGATCAATTAGACTTGTTTAAAAAATACAAAAGCAAGATAACTGCAGCAGTTGGGAATGAAAGAACAGCCACTATACTGTCGAAAAGCATTTCCTTCCTTTCCATGGGAAGCAATGACCTTGCAATTGATTATTTTTCTACACCACTAAGGAGCCCTCACTATGATATTCCAGCTTATACAGATCTCATGATCGAATCAGCTTCAAATTTCTTGCAGGAACTTCATGCACTGGGAGCAAGAGTGATCGGAGTAATATGTATACCACCAATTGGGTGTTTGCCAGCACAGAGAACACTTAATGGAGGTATAAAGAGAGCGTGCTACGAAACCGGGAATCAAGCAGCAACCCTTTTCAACTCGAAGCTCTCCCACCTTATAGATTCCCTCAATGAGAGACTTCCAGAAGCACACCTCATGTACCTTGATAGCTACAGCCCTGCGCTTTCCCTGATCCAAAACCCTGCTCAATATGGTAATGTCTCATGCATCATCATTTTCAATATATTAACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

315

Amino Acids

34.01

Weight (kDa)

6.95

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 291 2.8e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 212, 701
AccI GTMKAC 1 cut(s) 691
AciI CCGC 1 cut(s) 227
AclWI GGATC 4 cut(s) 320, 333, 388, 877
AcsI RAATTY 2 cut(s) 48, 637
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 3 cut(s) 212, 535, 701
AgsI TTSAA 5 cut(s) 150, 344, 636, 787, 931
AjuI GAANNNNNNNTTGG 4 cut(s) 9, 41, 185, 217
AluBI AGCT 5 cut(s) 340, 605, 632, 796, 861
AluI AGCT 5 cut(s) 340, 605, 632, 796, 861
Alw26I GTCTC 3 cut(s) 213, 820, 916
AlwI GGATC 4 cut(s) 320, 333, 388, 877
ApeKI GCWGC 5 cut(s) 92, 281, 337, 476, 773
ApoI RAATTY 2 cut(s) 48, 637
AspLEI GCGC 1 cut(s) 874
AsuC2I CCSGG 1 cut(s) 763
BamHI GGATCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 351
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 5 cut(s) 79, 268, 349, 488, 785
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 3 cut(s) 213, 820, 916
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 4 cut(s) 93, 186, 474, 862
BglII AGATCT 1 cut(s) 613
BisI GCNGC 5 cut(s) 93, 282, 338, 477, 774
BlsI GCNGC 5 cut(s) 94, 283, 339, 478, 775
Bme1390I CCNGG 1 cut(s) 763
BmiI GGNNCC 2 cut(s) 327, 584
BmrFI CCNGG 1 cut(s) 763
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 927
BmuI ACTGGG 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 763
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 535, 701
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 247, 361, 666
Bse3DI GCAATG 3 cut(s) 60, 262, 550
BseDI CCNNGG 1 cut(s) 534
BseLI CCNNNNNNNGG 3 cut(s) 212, 535, 701
BseMI GCAATG 3 cut(s) 60, 262, 550
BseMII CTCAG 2 cut(s) 285, 387
BseNI ACTGG 3 cut(s) 247, 361, 666
BseXI GCAGC 5 cut(s) 79, 268, 349, 488, 785
BsiSI CCGG 2 cut(s) 314, 762
BslI CCNNNNNNNGG 3 cut(s) 212, 535, 701
BsmAI GTCTC 3 cut(s) 213, 820, 916
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 284, 386
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 327, 584
BspMAI CTGCAG 2 cut(s) 97, 478
BspPI GGATC 4 cut(s) 320, 333, 388, 877
BsrDI GCAATG 3 cut(s) 60, 262, 550
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 3 cut(s) 247, 361, 666
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
BssNAI GTATAC 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 534
Bst1107I GTATAC 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 510
BstC8I GCNNGC 3 cut(s) 315, 714, 751
BstDEI CTNAG 3 cut(s) 271, 373, 578
BstDSI CCRYGG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 7 cut(s) 328, 383, 436, 616, 624, 678, 885
BstMAI GTCTC 3 cut(s) 213, 820, 916
BstMBI GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 761
BstSFI CTRYAG 4 cut(s) 93, 186, 474, 862
BstV1I GCAGC 5 cut(s) 79, 268, 349, 488, 785
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 325, 613
BstYI RGATCY 2 cut(s) 325, 613
BstZ17I GTATAC 1 cut(s) 692
BtgI CCRYGG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 399, 659
Cac8I GCNNGC 3 cut(s) 315, 714, 751
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 313
Csp6I GTAC 1 cut(s) 850
CviAII CATG 5 cut(s) 535, 619, 656, 847, 915
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 3 cut(s) 271, 373, 578
DpnI GATC 7 cut(s) 327, 382, 435, 615, 623, 677, 884
DpnII GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
DraI TTTAAA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 534
EcoT22I ATGCAT 1 cut(s) 920
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 538, 622, 659, 850, 918
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 5 cut(s) 534, 618, 655, 846, 914
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 93, 282, 338, 477, 774
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 5 cut(s) 93, 282, 338, 477, 774
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 873
GluI GCNGC 5 cut(s) 93, 282, 338, 477, 774
HapII CCGG 2 cut(s) 314, 762
HhaI GCGC 1 cut(s) 874
Hin1II CATG 5 cut(s) 538, 622, 659, 850, 918
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HinfI GANTC 4 cut(s) 146, 626, 766, 812
HpaII CCGG 2 cut(s) 314, 762
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 4 cut(s) 143, 274, 330, 680
Hpy188III TCNNGA 4 cut(s) 323, 384, 619, 833
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 2 cut(s) 39, 535
HpyCH4III ACNGT 1 cut(s) 510
HpyCH4V TGCA 8 cut(s) 65, 95, 337, 476, 554, 646, 659, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 3 cut(s) 271, 373, 578
Hsp92II CATG 5 cut(s) 538, 622, 659, 850, 918
HspAI GCGC 1 cut(s) 872
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
LmnI GCTCC 2 cut(s) 582, 665
Lsp1109I GCAGC 5 cut(s) 79, 268, 349, 488, 785
LweI GCATC 1 cut(s) 927
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 97, 423
MalI GATC 7 cut(s) 327, 382, 435, 615, 623, 677, 884
MboI GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
MboII GAAGA 5 cut(s) 27, 258, 313, 316, 356
MfeI CAATTG 2 cut(s) 555, 699
MflI RGATCY 2 cut(s) 325, 613
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 8 cut(s) 48, 199, 332, 407, 437, 555, 637, 699
MnlI CCTC 9 cut(s) 86, 224, 280, 382, 405, 597, 728, 827, 854
Mph1103I ATGCAT 1 cut(s) 920
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 3 cut(s) 450, 729, 938
MspI CCGG 2 cut(s) 314, 762
MspR9I CCNGG 1 cut(s) 763
MunI CAATTG 2 cut(s) 555, 699
MwoI GCNNNNNNNGC 1 cut(s) 665
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 763
NcoI CCATGG 1 cut(s) 534
NdeII GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 5 cut(s) 538, 622, 659, 850, 918
NlaIV GGNNCC 2 cut(s) 327, 584
NmuCI GTSAC 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 920
PagI TCATGA 1 cut(s) 618
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 4 cut(s) 146, 626, 766, 812
PflMI CCANNNNNTGG 2 cut(s) 212, 701
PkrI GCNGC 5 cut(s) 94, 283, 339, 478, 775
PspN4I GGNNCC 2 cut(s) 327, 584
PstI CTGCAG 2 cut(s) 97, 478
PsuI RGATCY 2 cut(s) 325, 613
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
SaqAI TTAA 3 cut(s) 450, 729, 938
SatI GCNGC 5 cut(s) 93, 282, 338, 477, 774
Sau3AI GATC 7 cut(s) 325, 380, 433, 613, 621, 675, 882
ScrFI CCNGG 1 cut(s) 763
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 1 cut(s) 927
SfcI CTRYAG 4 cut(s) 93, 186, 474, 862
Sse9I AATT 8 cut(s) 48, 199, 332, 407, 437, 555, 637, 699
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 761
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 510
TaqI TCGA 4 cut(s) 45, 512, 624, 791
TasI AATT 8 cut(s) 48, 199, 332, 407, 437, 555, 637, 699
TfiI GAWTC 4 cut(s) 146, 626, 766, 812
Tru1I TTAA 3 cut(s) 450, 729, 938
Tru9I TTAA 3 cut(s) 450, 729, 938
TscAI CASTG 2 cut(s) 406, 666
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 5 cut(s) 92, 281, 337, 476, 773
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 4 cut(s) 21, 27, 504, 644
TspRI CASTG 2 cut(s) 406, 666
Van91I CCANNNNNTGG 2 cut(s) 212, 701
XapI RAATTY 2 cut(s) 48, 637
XmiI GTMKAC 1 cut(s) 691
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.