Rorug02G0291200

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000393
Physical Location & Seq
Reverse (-)
32016452 .. 32020814
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0291200.1

Sequence Viewer

Length: 1011 bp
ATGTCGGGTATGGGGGACGGGTACGTGGGCACGGCCCAAGACGCCGTGAGGATCCGAAGGCTGGAGAAGCAAAGAGAAGCTGAGCGCCAGAAAATCCAAGAGCTCAAGACCAAGTCTGCCTCCGATAAAGGCCAGCCCGGCCTCCTCCAATTCGGCTCAAGTACTTCTGAGATTCTTGAGACGGCGTTTAAGAAAGAGACTGTTGGTTTGGTCACCAGGGAGCAATACGTCGAGAAGAGAGTAAATATTCGGAACAAAATCGAGGAGGAAGAGAAGGAAAAGCTTCAGAAGCTTCAACAGGAAGAGGAGGCATTTCAGTTACAGAAGCGTAAGAAGAGGAAGGTCAAGGGGATTAATCGATTGTCCTTTGCCGATGACATTGAGGATGGAAGTGAAGAGGAAGATGGAGAAAATAAAAGTACAGAGACTACAAGGTTATGGTCTGGTAGATTTGGCAAAGATCCTACTGTGGAAACTAGCTTTCTGCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAAAGGTTGCGAAAACAGTGGTTTCTTGAGCAGGAGAAGATACGAAATGAGCCACTTCAAATTACTTACAGTTACTGGGATGGAGCAGGGCATAGGCGGACGATCCAGGTTCGAAAGGGGGATAAAATAGGAGATTTTCTTCGCTCTGTTCAACAGCAACTAGCACCTGAGTTTCGAGAAGTTCGAACTACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCGCATCAGCACAGTTTCTATGAGCTAATTGTAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTGCGAACTATTGCTGATGCTACGATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTTGAGAGGCATTGGTATGACAAGAATAAGCATATTTTCCCTGCTTCTAGATGGGAGATATATGATCCAACGAAGAAATGGGAGCGTTACACCATCCATGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

336

Amino Acids

39.44

Weight (kDa)

6.38

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XAP5 PF04921 193 - 332 1.1e-52 XAP5, circadian clock regulator C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 4 cut(s) 499, 622, 761, 818
AclWI GGATC 5 cut(s) 46, 59, 455, 622, 962
AcsI RAATTY 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 23, 163, 421
AfiI CCNNNNNNNGG 2 cut(s) 61, 1002
AgsI TTSAA 3 cut(s) 296, 584, 677
AjnI CCWGG 2 cut(s) 215, 630
AluBI AGCT 7 cut(s) 80, 103, 283, 292, 480, 518, 784
AluI AGCT 7 cut(s) 80, 103, 283, 292, 480, 518, 784
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 4 cut(s) 173, 191, 419, 891
AlwI GGATC 5 cut(s) 46, 59, 455, 622, 962
AlwNI CAGNNNCTG 1 cut(s) 600
AoxI GGCC 3 cut(s) 33, 130, 139
ApoI RAATTY 1 cut(s) 727
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 34, 815
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 2 cut(s) 637, 709
AvaII GGWCC 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 5 cut(s) 380, 398, 599, 948, 1004
BceAI ACGGC 3 cut(s) 29, 48, 198
BciT130I CCWGG 2 cut(s) 217, 632
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 4 cut(s) 173, 191, 419, 891
BfaI CTAG 3 cut(s) 477, 686, 951
BfoI RGCGCY 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 138
BglII AGATCT 1 cut(s) 748
BlpI GCTNAGC 2 cut(s) 81, 519
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 3 cut(s) 138, 217, 632
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 2 cut(s) 34, 815
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 3 cut(s) 138, 217, 632
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 2 cut(s) 772, 853
BmuI ACTGGG 1 cut(s) 610
BpmI CTGGAG 1 cut(s) 83
Bpu1102I GCTNAGC 2 cut(s) 81, 519
Bpu14I TTCGAA 2 cut(s) 637, 709
BpuEI CTTGAG 4 cut(s) 89, 142, 197, 572
BpuMI CCSGG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 216, 1000
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 1002
Bse1I ACTGG 1 cut(s) 605
BseBI CCWGG 2 cut(s) 217, 632
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 216, 1000
BseGI GGATG 5 cut(s) 391, 610, 850, 886, 996
BseLI CCNNNNNNNGG 2 cut(s) 61, 1002
BseMII CTCAG 5 cut(s) 72, 159, 510, 684, 732
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 3 cut(s) 134, 278, 320
BseSI GKGCMC 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 893
BshFI GGCC 3 cut(s) 35, 132, 141
BshVI ATCGAT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 61, 1002
BsmAI GTCTC 4 cut(s) 173, 191, 419, 891
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 3 cut(s) 35, 132, 141
Bsp119I TTCGAA 2 cut(s) 637, 709
Bsp1286I GDGCHC 2 cut(s) 32, 105
Bsp143I GATC 5 cut(s) 51, 460, 627, 748, 967
Bsp1720I GCTNAGC 2 cut(s) 81, 519
Bsp19I CCATGG 1 cut(s) 1000
BspACI CCGC 4 cut(s) 499, 622, 761, 818
BspANI GGCC 3 cut(s) 35, 132, 141
BspCNI CTCAG 5 cut(s) 73, 160, 511, 685, 731
BspDI ATCGAT 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 5 cut(s) 46, 59, 455, 622, 962
BspT104I TTCGAA 2 cut(s) 637, 709
BsrBI CCGCTC 1 cut(s) 499
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 216, 1000
BssMI GATC 5 cut(s) 51, 460, 627, 748, 967
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 1000
Bst2UI CCWGG 2 cut(s) 217, 632
Bst4CI ACNGT 5 cut(s) 202, 469, 543, 596, 773
Bst6I CTCTTC 5 cut(s) 230, 264, 297, 329, 390
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 25
BstBI TTCGAA 2 cut(s) 637, 709
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 5 cut(s) 81, 168, 519, 693, 718
BstDSI CCRYGG 1 cut(s) 1000
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 5 cut(s) 391, 610, 850, 886, 996
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 5 cut(s) 54, 463, 630, 751, 970
BstMAI GTCTC 4 cut(s) 173, 191, 419, 891
BstMBI GATC 5 cut(s) 51, 460, 627, 748, 967
BstMWI GCNNNNNNNGC 4 cut(s) 41, 67, 138, 289
BstNI CCWGG 2 cut(s) 217, 632
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 136, 215, 630
BstSLI GKGCMC 1 cut(s) 32
BstX2I RGATCY 3 cut(s) 51, 460, 748
BstYI RGATCY 3 cut(s) 51, 460, 748
Bsu15I ATCGAT 1 cut(s) 358
BsuRI GGCC 3 cut(s) 35, 132, 141
BsuTUI ATCGAT 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 1000
BtsCI GGATG 5 cut(s) 391, 610, 850, 886, 996
BtsIMutI CAGTG 2 cut(s) 548, 726
Cac8I GCNNGC 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 600
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 34, 815
ClaI ATCGAT 1 cut(s) 358
CseI GACGC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 22, 162, 420
CviAII CATG 3 cut(s) 839, 890, 1001
CviQI GTAC 3 cut(s) 22, 162, 420
DdeI CTNAG 5 cut(s) 81, 168, 519, 693, 718
DpnI GATC 5 cut(s) 53, 462, 629, 750, 969
DpnII GATC 5 cut(s) 51, 460, 627, 748, 967
Eam1104I CTCTTC 5 cut(s) 230, 264, 297, 329, 390
EarI CTCTTC 5 cut(s) 230, 264, 297, 329, 390
EciI GGCGGA 1 cut(s) 637
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 1000
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 215, 630
EcoT14I CCWWGG 1 cut(s) 1000
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 1000
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 842, 893, 1004
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 838, 889, 1000
FauI CCCGC 1 cut(s) 492
FokI GGATG 5 cut(s) 398, 617, 857, 893, 983
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 3 cut(s) 477, 686, 951
GlaI GCGC 1 cut(s) 86
GsaI CCCAGC 1 cut(s) 897
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 3 cut(s) 35, 132, 141
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 842, 893, 1004
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 281, 290
HinfI GANTC 2 cut(s) 172, 884
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 793, 815
Hpy188I TCNGA 5 cut(s) 56, 124, 169, 252, 288
Hpy188III TCNNGA 6 cut(s) 106, 176, 232, 551, 701, 951
Hpy8I GTNNAC 2 cut(s) 793, 815
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 51, 268, 334, 871, 892
HpyCH4III ACNGT 5 cut(s) 202, 469, 543, 596, 773
HpyCH4IV ACGT 2 cut(s) 24, 228
HpyCH4V TGCA 1 cut(s) 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 67, 138, 289
HpyF3I CTNAG 5 cut(s) 81, 168, 519, 693, 718
HpySE526I ACGT 2 cut(s) 24, 228
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 842, 893, 1004
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 51, 460, 627, 748, 967
LmnI GCTCC 3 cut(s) 220, 608, 985
LweI GCATC 2 cut(s) 772, 853
MaeI CTAG 3 cut(s) 477, 686, 951
MaeII ACGT 2 cut(s) 24, 228
MaeIII GTNAC 4 cut(s) 211, 318, 596, 989
MalI GATC 5 cut(s) 53, 462, 629, 750, 969
MbiI CCGCTC 1 cut(s) 499
MboI GATC 5 cut(s) 51, 460, 627, 748, 967
MflI RGATCY 3 cut(s) 51, 460, 748
MhlI GDGCHC 2 cut(s) 32, 105
MluCI AATT 4 cut(s) 149, 585, 727, 786
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 1 cut(s) 995
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 189, 354
MslI CAYNNNNRTG 3 cut(s) 831, 843, 918
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 3 cut(s) 138, 217, 632
MvaI CCWGG 2 cut(s) 217, 632
MwoI GCNNNNNNNGC 4 cut(s) 41, 67, 138, 289
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 1000
NdeII GATC 5 cut(s) 51, 460, 627, 748, 967
NlaIII CATG 3 cut(s) 842, 893, 1004
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 2 cut(s) 637, 709
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 172
PflFI GACNNNGTC 1 cut(s) 112
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
Ppu21I YACGTR 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 215, 630
PspEI GGTNACC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 2 cut(s) 215, 630
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 34, 815
PstNI CAGNNNCTG 1 cut(s) 600
PsuI RGATCY 3 cut(s) 51, 460, 748
PsyI GACNNNGTC 1 cut(s) 112
RsaI GTAC 3 cut(s) 23, 163, 421
RsaNI GTAC 3 cut(s) 22, 162, 420
RseI CAYNNNNRTG 3 cut(s) 831, 843, 918
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 189, 354
Sau3AI GATC 5 cut(s) 51, 460, 627, 748, 967
Sau96I GGNCC 2 cut(s) 34, 815
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 3 cut(s) 138, 217, 632
SduI GDGCHC 2 cut(s) 32, 105
SfaNI GCATC 2 cut(s) 772, 853
SfiI GGCCNNNNNGGCC 1 cut(s) 138
SfuI TTCGAA 2 cut(s) 637, 709
SinI GGWCC 1 cut(s) 815
SmiMI CAYNNNNRTG 3 cut(s) 831, 843, 918
SmlI CTYRAG 4 cut(s) 104, 157, 176, 551
SmoI CTYRAG 4 cut(s) 104, 157, 176, 551
Sse9I AATT 4 cut(s) 149, 585, 727, 786
SsiI CCGC 4 cut(s) 499, 622, 761, 818
SspI AATATT 1 cut(s) 247
SspMI CTAG 3 cut(s) 477, 686, 951
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 136, 215, 630
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 5 cut(s) 202, 469, 543, 596, 773
TaiI ACGT 2 cut(s) 27, 231
TaqI TCGA 6 cut(s) 231, 261, 358, 637, 700, 709
TasI AATT 4 cut(s) 149, 585, 727, 786
TatI WGTACW 2 cut(s) 161, 419
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 189, 354
Tru9I TTAA 2 cut(s) 189, 354
TscAI CASTG 2 cut(s) 548, 726
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 815
TspRI CASTG 2 cut(s) 548, 726
Tth111I GACNNNGTC 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 815
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 727
XbaI TCTAGA 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 978
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 477, 686, 951
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.