Rmu_co8282213.1_g000001

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282213.1
OG0000393
Physical Location & Seq
Reverse (-)
1 .. 701
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282213.1_g000001.1.cds

Sequence Viewer

Length: 316 bp
atgtggaggcactatgaaaatttgctttcgaagtgtttgaaagcagtattactatttgttcaagtccgagttctattagtatgtctgtgcacctcaaacgtagtagctgaagctggggaccgaccagctgaaatcaacagaatgtcgtcgccgttcgtaggggttttcgcctttggagattcggttcttgacacaggcaacaacaatgacctccctactgtagccagatgcaatttcccaccctatggaagagattttataggaggcatccctacgggaagatttagcaatgggaaagtttactccgacattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

105

Amino Acids

11.56

Weight (kDa)

7.66

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 158, 245
AgsI TTSAA 2 cut(s) 40, 62
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 107, 113, 128
AluI AGCT 3 cut(s) 107, 113, 128
Alw21I GWGCWC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 119
BmsI GCATC 2 cut(s) 218, 276
Bpu14I TTCGAA 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 245
Bse3DI GCAATG 1 cut(s) 295
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 158, 245
BseMI GCAATG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 92
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 158, 245
BsmFI GGGAC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 29
BstF5I GGATG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 118
CviJI RGCY 4 cut(s) 107, 113, 128, 224
CviKI_1 RGCY 4 cut(s) 107, 113, 128, 224
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 129
FaiI YATR 5 cut(s) 15, 82, 246, 260, 314
FaqI GGGAC 1 cut(s) 131
FokI GGATG 1 cut(s) 254
GsaI CCCAGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 90, 301
Hpy188I TCNGA 2 cut(s) 68, 307
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 90, 301
Hpy99I CGWCG 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 90, 231
HpySE526I ACGT 1 cut(s) 99
LpnPI CCDG 4 cut(s) 99, 138, 180, 238
LweI GCATC 2 cut(s) 218, 276
MaeII ACGT 1 cut(s) 99
MboII GAAGA 2 cut(s) 261, 291
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 2 cut(s) 19, 232
MnlI CCTC 3 cut(s) 103, 221, 257
MspA1I CMGCKG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 29
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 92
SetI ASST 6 cut(s) 95, 102, 109, 115, 130, 213
SfaNI GCATC 2 cut(s) 218, 276
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 29
SgeI CNNG 8 cut(s) 74, 80, 126, 137, 200, 207, 237, 288
SinI GGWCC 1 cut(s) 118
Sse9I AATT 2 cut(s) 19, 232
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 29
TaqII GACCGA 1 cut(s) 135
TasI AATT 2 cut(s) 19, 232
TfiI GAWTC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.