pycom02g09900

GDSL esterase lipase EXL3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
6844218 .. 6845733
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09900.3

Sequence Viewer

Length: 1101 bp
ATGAACTTTCTGTCCCAAAAACTTCTTCCTTCATCTAAATCTTCTCTCAAATTTCTTTCGTTCGTTATAGTTTTGTTCTTTTACAGCCATGCTGCTGCTGTGAAACTACCAAACAACGAAAAGATTCCGGCACTGATTGTTTTTGGAGATTCAATAGTGGATCCTGGAAACAACGACAATATTGGCACTATAGTCAAATGCAACTTCCCACCTTATGGGAGGGACTTTATAGGAAAACGGCCTACTGGAAGGTTTAGTAATGGCAGAGTTCCCTCAGACTTGATAGCTGAATCAGTTGGAGTGAAAAATATTTTACCAGCTTATTTGGATCCAAATCTGAAGATTGAAGACCTACTTACTGGTGTAAGTTTTGCCTCAGGTGGTTCAGGATATGATCCTCTCACTCCCCAAATTGTGTCTGTCCTATCATTATCAGATCAACTAGACCTGTTCAAAGATTACATACGCAAGATAACTGCAGCGGCGGGGGAGGAGAGCGCGGCAACTATAGTATCAAAAAGCATATACATTTTGTGCATAGGAAGCGACGACATTGCAAATACTTATTTCTCTACACCAGTGAGGAGACCTTACTATGACATTCCAGCGTATACCGATCTCATGATTAACTCAGCTTCAAGTTTCTTACAGGAACTTTATGGACTCGGAGCAAGAAGAATTGGAGTAATAAATCTGCCGGCAATCGGGTGTGTGCCGTCACAGAGAACACTGGGTAGAGGCATAAATAGGGATTGCTCCGAGACTGCTAACCAAGCGGCCCGCCTCTTCAACTCCAAGCTCTCGGCCAAAATAGATGCCTTCAATAAGAGGCTTCCACAAGCGAGGGTAGTCTACCTTGATATCTACTACACATTGCTTTCCCTCATCCAAAACCCTACTCAATATGGATTTGAAGTGGTGAATGAGGGCTGCTGTGGAACAGGAAACATCGAGGTTAGCGTCCTGTGTACTCGTTATTCTCCGGGAACCTGCAATGATTCATCGAAATACATATTCTGGGACAGCTATCATCCCACAGAGAAGACATATGAGATCCTTGTCCCTCTGGTTTTCGATACGCAAATTCGTAAATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

40.34

Weight (kDa)

8.01

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 998
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 2 cut(s) 611, 852
AccII CGCG 1 cut(s) 500
AciI CCGC 5 cut(s) 482, 485, 500, 776, 781
AclWI GGATC 6 cut(s) 155, 168, 323, 336, 389, 1048
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 3 cut(s) 50, 1083, 1091
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 970
AfiI CCNNNNNNNGG 2 cut(s) 215, 704
AgsI TTSAA 7 cut(s) 153, 347, 454, 639, 790, 823, 914
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 5 cut(s) 287, 320, 635, 799, 1026
AluI AGCT 5 cut(s) 287, 320, 635, 799, 1026
Alw26I GTCTC 2 cut(s) 580, 755
AlwI GGATC 6 cut(s) 155, 168, 323, 336, 389, 1048
AoxI GGCC 3 cut(s) 239, 777, 804
ApeKI GCWGC 4 cut(s) 92, 95, 479, 930
ApoI RAATTY 3 cut(s) 50, 1083, 1091
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 778
AsuC2I CCSGG 1 cut(s) 984
AsuHPI GGTGA 1 cut(s) 931
AxyI CCTNAGG 1 cut(s) 376
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BamHI GGATCC 2 cut(s) 160, 328
BbsI GAAGAC 2 cut(s) 354, 1049
BbvI GCAGC 4 cut(s) 79, 82, 491, 917
BceAI ACGGC 2 cut(s) 254, 700
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 984
BcoDI GTCTC 2 cut(s) 580, 755
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 3 cut(s) 189, 477, 507
BfuAI ACCTGC 1 cut(s) 998
BisI GCNGC 7 cut(s) 93, 96, 480, 483, 501, 777, 931
BlsI GCNGC 7 cut(s) 94, 97, 481, 484, 502, 778, 932
Bme1390I CCNGG 2 cut(s) 165, 984
BmgT120I GGNCC 1 cut(s) 778
BmiI GGNNCC 3 cut(s) 162, 330, 988
BmrFI CCNGG 2 cut(s) 165, 984
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 1 cut(s) 805
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 2 cut(s) 354, 1049
BpuMI CCSGG 1 cut(s) 984
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 580
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 704
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 4 cut(s) 250, 364, 578, 735
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 3 cut(s) 552, 872, 1000
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 885, 1030
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 215, 704
BseMI GCAATG 3 cut(s) 552, 872, 1000
BseMII CTCAG 3 cut(s) 288, 390, 645
BseNI ACTGG 4 cut(s) 250, 364, 578, 735
BseRI GAGGAG 2 cut(s) 506, 598
BseXI GCAGC 4 cut(s) 79, 82, 491, 917
Bsh1236I CGCG 1 cut(s) 500
BshFI GGCC 3 cut(s) 241, 779, 806
BsiSI CCGG 3 cut(s) 128, 698, 983
BslFI GGGAC 3 cut(s) 236, 1034, 1046
BslI CCNNNNNNNGG 2 cut(s) 215, 704
BsmAI GTCTC 2 cut(s) 580, 755
BsmFI GGGAC 3 cut(s) 236, 1034, 1046
BsnI GGCC 3 cut(s) 241, 779, 806
Bso31I GGTCTC 1 cut(s) 580
Bsp143I GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
BspACI CCGC 5 cut(s) 482, 485, 500, 776, 781
BspANI GGCC 3 cut(s) 241, 779, 806
BspCNI CTCAG 3 cut(s) 287, 389, 644
BspFNI CGCG 1 cut(s) 500
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 162, 330, 988
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 998
BspPI GGATC 6 cut(s) 155, 168, 323, 336, 389, 1048
BspTNI GGTCTC 1 cut(s) 580
BsrDI GCAATG 3 cut(s) 552, 872, 1000
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 4 cut(s) 250, 364, 578, 735
BssAI RCCGGY 1 cut(s) 697
BssMI GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
BssNAI GTATAC 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 699, 781
BstDEI CTNAG 3 cut(s) 274, 376, 631
BstF5I GGATG 2 cut(s) 885, 1030
BstFNI CGCG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 6 cut(s) 163, 331, 397, 439, 619, 1056
BstMAI GTCTC 2 cut(s) 580, 755
BstMBI GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
BstMWI GCNNNNNNNGC 2 cut(s) 543, 773
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 163, 982
BstSFI CTRYAG 3 cut(s) 189, 477, 507
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 4 cut(s) 79, 82, 491, 917
BstV2I GAAGAC 2 cut(s) 354, 1049
BstX2I RGATCY 3 cut(s) 160, 328, 1053
BstYI RGATCY 3 cut(s) 160, 328, 1053
BstZ17I GTATAC 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 376
BsuRI GGCC 3 cut(s) 241, 779, 806
BtsCI GGATG 2 cut(s) 885, 1030
BtsIMutI CAGTG 3 cut(s) 131, 585, 728
BveI ACCTGC 1 cut(s) 998
Cac8I GCNNGC 2 cut(s) 699, 781
CciI TCATGA 1 cut(s) 621
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 778
CseI GACGC 1 cut(s) 949
Csp6I GTAC 1 cut(s) 969
CviAII CATG 2 cut(s) 89, 622
CviQI GTAC 1 cut(s) 969
DdeI CTNAG 3 cut(s) 274, 376, 631
DpnI GATC 6 cut(s) 162, 330, 396, 438, 618, 1055
DpnII GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 580
Eco32I GATATC 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 163
EcoRV GATATC 1 cut(s) 862
FaeI CATG 2 cut(s) 92, 625
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 3 cut(s) 236, 1034, 1046
FatI CATG 2 cut(s) 88, 621
FauI CCCGC 2 cut(s) 478, 788
FauNDI CATATG 1 cut(s) 1048
FblI GTMKAC 2 cut(s) 611, 852
Fnu4HI GCNGC 7 cut(s) 93, 96, 480, 483, 501, 777, 931
FokI GGATG 2 cut(s) 872, 1017
Fsp4HI GCNGC 7 cut(s) 93, 96, 480, 483, 501, 777, 931
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 499
GluI GCNGC 7 cut(s) 93, 96, 480, 483, 501, 777, 931
HaeIII GGCC 3 cut(s) 241, 779, 806
HapII CCGG 3 cut(s) 128, 698, 983
HgaI GACGC 1 cut(s) 949
HhaI GCGC 1 cut(s) 500
Hin1II CATG 2 cut(s) 92, 625
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 5 cut(s) 124, 149, 290, 663, 998
HpaII CCGG 3 cut(s) 128, 698, 983
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 3 cut(s) 612, 853, 969
Hpy188I TCNGA 6 cut(s) 277, 339, 436, 668, 760, 1100
Hpy188III TCNNGA 2 cut(s) 387, 622
Hpy8I GTNNAC 3 cut(s) 612, 853, 969
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 3 cut(s) 39, 243, 829
HpyCH4V TGCA 5 cut(s) 201, 479, 537, 557, 993
HpyF10VI GCNNNNNNNGC 2 cut(s) 543, 773
HpyF3I CTNAG 3 cut(s) 274, 376, 631
Hsp92II CATG 2 cut(s) 92, 625
HspAI GCGC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 697
KroNI GCCGGC 1 cut(s) 699
Kzo9I GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
LmnI GCTCC 2 cut(s) 668, 761
Lsp1109I GCAGC 4 cut(s) 79, 82, 491, 917
LweI GCATC 1 cut(s) 805
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 717
MalI GATC 6 cut(s) 162, 330, 396, 438, 618, 1055
MboI GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
MboII GAAGA 8 cut(s) 17, 33, 352, 359, 687, 778, 1054, 1087
MflI RGATCY 3 cut(s) 160, 328, 1053
MluCI AATT 5 cut(s) 50, 411, 678, 1083, 1091
MlyI GAGTC 1 cut(s) 657
MmeI TCCRAC 1 cut(s) 277
MroNI GCCGGC 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 3 cut(s) 128, 698, 983
MspR9I CCNGG 2 cut(s) 165, 984
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 543, 773
NaeI GCCGGC 1 cut(s) 699
NciI CCSGG 1 cut(s) 984
NdeI CATATG 1 cut(s) 1048
NdeII GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
NgoMIV GCCGGC 1 cut(s) 697
NlaIII CATG 2 cut(s) 92, 625
NlaIV GGNNCC 3 cut(s) 162, 330, 988
NmeAIII GCCGAG 1 cut(s) 782
NmuCI GTSAC 1 cut(s) 717
PagI TCATGA 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 957
PdiI GCCGGC 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 4 cut(s) 124, 149, 290, 998
PflMI CCANNNNNTGG 1 cut(s) 215
PfoI TCCNGGA 2 cut(s) 163, 982
PkrI GCNGC 7 cut(s) 94, 97, 481, 484, 502, 778, 932
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 162, 330, 988
PspPI GGNCC 1 cut(s) 778
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 3 cut(s) 160, 328, 1053
RsaI GTAC 1 cut(s) 970
RsaNI GTAC 1 cut(s) 969
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 7 cut(s) 93, 96, 480, 483, 501, 777, 931
Sau3AI GATC 6 cut(s) 160, 328, 394, 436, 616, 1053
Sau96I GGNCC 1 cut(s) 778
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 2 cut(s) 165, 984
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 3 cut(s) 189, 477, 507
Sse9I AATT 5 cut(s) 50, 411, 678, 1083, 1091
SsiI CCGC 5 cut(s) 482, 485, 500, 776, 781
SspI AATATT 2 cut(s) 181, 310
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 163, 982
TaqI TCGA 3 cut(s) 951, 1004, 1074
TasI AATT 5 cut(s) 50, 411, 678, 1083, 1091
TatI WGTACW 1 cut(s) 968
TauI GCSGC 3 cut(s) 485, 503, 779
TfiI GAWTC 4 cut(s) 124, 149, 290, 998
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 3 cut(s) 138, 585, 735
TseFI GTSAC 1 cut(s) 717
TseI GCWGC 4 cut(s) 92, 95, 479, 930
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 3 cut(s) 17, 21, 990
TspRI CASTG 3 cut(s) 138, 585, 735
Van91I CCANNNNNTGG 1 cut(s) 215
XapI RAATTY 3 cut(s) 50, 1083, 1091
XmiI GTMKAC 2 cut(s) 611, 852
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.