Rh2CG127800

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000393
Physical Location & Seq
Forward (+)
11390480 .. 11420506
30027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG127800.1

Sequence Viewer

Length: 942 bp
ATGGCTCTTCTCTCACAAAAAGCTCGTCCTTCATCTTCATCTGTCAAAGCGTTTGCAATGATCTTATGTATATTCCTCTCCCATAACGTTGCTGCTGTAACACCTCCCATAAATGAAACAACTCCGGCAGTCTTTACTTTCGGAGATTCAACATTAGATACCGGCGATAACGAATACATCATTTTTATACTCAAAAGTAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAAAGCCTACAGGAAGATTTAGCAATGGAAGAGTCCCCTCAGACATCATTGGTGAAGGATTTGGATTAAAGAAGATTTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTCGTGGTGTATGTTTTGCCTCAGCAGGTTCAGGATATGACCCTCTTACTGCCAGATCACAGTCTGTCTTGTCGTTATTAGATCAATTAAACTTGTTCATAGAACACAAAAGCAAGATAAACGCAGCAATTGGGAATGAAAGAACAGCCACTCTACTGTCAAAAAGCTTATGCGTTCTTTCGATAGGAAGCAATGACCTTTCACTTAATTATTTTTCTACACCACTGAGGAGCGCTCACTATGATATTCCAACTTATACAGACTTCCTGCTTGAATTAGCTGCAAACTTCTTTCAGTTAATGTGGGAGAAATTACAGGAACTTTATGCACTGGGAGCAAGAGTGATTGGAGTAGCAAGTATGCCACCAATTGGGTGTGTGCCAGCACATAGAACACTCAGTGGAGGCATAGAGAGAGTCTGCGATGAGATTGAGAACCAAGCAGCAATCCTCTTCAACTCGAAGCTCTCCGCCCTTATAGACTCCCTCAATAAGAGACTTCCAGAAGCACAACTCATTTACGTTGACATATATAACCCTTTGTTGTCCATTATCCAAGACCCTGCTCAATATGCCATGAAGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

313

Amino Acids

34.13

Weight (kDa)

5.84

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 300 3.7e-22 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 2 cut(s) 212, 722
AciI CCGC 1 cut(s) 822
AclI AACGTT 1 cut(s) 87
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 752
AfeI AGCGCT 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 212, 722
AgsI TTSAA 4 cut(s) 150, 344, 626, 808
AluBI AGCT 5 cut(s) 23, 340, 519, 632, 817
AluI AGCT 5 cut(s) 23, 340, 519, 632, 817
Alw26I GTCTC 2 cut(s) 213, 841
AlwI GGATC 2 cut(s) 320, 333
Aor51HI AGCGCT 1 cut(s) 586
ApeKI GCWGC 5 cut(s) 92, 337, 476, 632, 794
ApoI RAATTY 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AspLEI GCGC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 296
BamHI GGATCC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 5 cut(s) 79, 349, 488, 619, 806
BcoDI GTCTC 2 cut(s) 213, 841
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 932
BisI GCNGC 5 cut(s) 93, 338, 477, 633, 795
BlsI GCNGC 5 cut(s) 94, 339, 478, 634, 796
BmiI GGNNCC 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 692
BmuI ACTGGG 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 571, 603
Bpu10I CCTNAGC 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 722
Bse118I RCCGGY 2 cut(s) 161, 313
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 3 cut(s) 63, 262, 550
BseLI CCNNNNNNNGG 2 cut(s) 212, 722
BseMI GCAATG 3 cut(s) 63, 262, 550
BseMII CTCAG 4 cut(s) 285, 387, 569, 763
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 5 cut(s) 79, 349, 488, 619, 806
BsiSI CCGG 3 cut(s) 125, 162, 314
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 212, 722
BsmAI GTCTC 2 cut(s) 213, 841
BsmFI GGGAC 1 cut(s) 251
Bsp143I GATC 4 cut(s) 60, 325, 407, 433
BspACI CCGC 1 cut(s) 822
BspCNI CTCAG 4 cut(s) 284, 386, 570, 762
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 320, 333
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 3 cut(s) 63, 262, 550
BsrFI RCCGGY 2 cut(s) 161, 313
BsrI ACTGG 1 cut(s) 687
BssAI RCCGGY 2 cut(s) 161, 313
BssMI GATC 4 cut(s) 60, 325, 407, 433
Bst4CI ACNGT 2 cut(s) 414, 510
Bst6I CTCTTC 3 cut(s) 12, 256, 809
BstC8I GCNNGC 2 cut(s) 315, 735
BstDEI CTNAG 4 cut(s) 271, 373, 578, 749
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 4 cut(s) 63, 328, 410, 436
BstMAI GTCTC 2 cut(s) 213, 841
BstMBI GATC 4 cut(s) 60, 325, 407, 433
BstMWI GCNNNNNNNGC 3 cut(s) 686, 923, 932
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 5 cut(s) 79, 349, 488, 619, 806
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 789
BtsIMutI CAGTG 3 cut(s) 575, 680, 757
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 315, 735
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 2 cut(s) 161, 313
CviAII CATG 1 cut(s) 928
DdeI CTNAG 4 cut(s) 271, 373, 578, 749
DpnI GATC 4 cut(s) 62, 327, 409, 435
DpnII GATC 4 cut(s) 60, 325, 407, 433
DraIII CACNNNGTG 1 cut(s) 752
Eam1104I CTCTTC 3 cut(s) 12, 256, 809
EarI CTCTTC 3 cut(s) 12, 256, 809
EciI GGCGGA 1 cut(s) 811
Eco47III AGCGCT 1 cut(s) 586
FaeI CATG 1 cut(s) 931
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 927
Fnu4HI GCNGC 5 cut(s) 93, 338, 477, 633, 795
Fsp4HI GCNGC 5 cut(s) 93, 338, 477, 633, 795
GlaI GCGC 1 cut(s) 586
GluI GCNGC 5 cut(s) 93, 338, 477, 633, 795
HaeII RGCGCY 1 cut(s) 588
HapII CCGG 3 cut(s) 125, 162, 314
HhaI GCGC 1 cut(s) 587
Hin1II CATG 1 cut(s) 931
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 4 cut(s) 146, 264, 768, 833
HpaII CCGG 3 cut(s) 125, 162, 314
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 3 cut(s) 143, 274, 330
Hpy188III TCNNGA 5 cut(s) 323, 344, 384, 854, 939
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 3 cut(s) 39, 281, 925
HpyCH4III ACNGT 2 cut(s) 414, 510
HpyCH4IV ACGT 2 cut(s) 87, 873
HpyCH4V TGCA 4 cut(s) 56, 337, 635, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 686, 923, 932
HpyF3I CTNAG 4 cut(s) 271, 373, 578, 749
HpySE526I ACGT 2 cut(s) 87, 873
Hsp92II CATG 1 cut(s) 931
HspAI GCGC 1 cut(s) 585
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 60, 325, 407, 433
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 582, 686
Lsp1109I GCAGC 5 cut(s) 79, 349, 488, 619, 806
MaeII ACGT 2 cut(s) 87, 873
MaeIII GTNAC 1 cut(s) 97
MalI GATC 4 cut(s) 62, 327, 409, 435
MboI GATC 4 cut(s) 60, 325, 407, 433
MboII GAAGA 5 cut(s) 27, 258, 273, 316, 796
MfeI CAATTG 2 cut(s) 480, 720
MflI RGATCY 1 cut(s) 325
MluCI AATT 8 cut(s) 199, 331, 437, 480, 559, 626, 662, 720
MlyI GAGTC 3 cut(s) 273, 777, 827
MmeI TCCRAC 1 cut(s) 626
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 4 cut(s) 299, 440, 558, 650
MspI CCGG 3 cut(s) 125, 162, 314
MunI CAATTG 2 cut(s) 480, 720
MwoI GCNNNNNNNGC 3 cut(s) 686, 923, 932
NaeI GCCGGC 1 cut(s) 315
NdeII GATC 4 cut(s) 60, 325, 407, 433
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 1 cut(s) 931
NlaIV GGNNCC 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 2 cut(s) 212, 722
PkrI GCNGC 5 cut(s) 94, 339, 478, 634, 796
PleI GAGTC 3 cut(s) 272, 776, 827
PpsI GAGTC 3 cut(s) 272, 776, 827
Psp1406I AACGTT 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 299, 440, 558, 650
SatI GCNGC 5 cut(s) 93, 338, 477, 633, 795
Sau3AI GATC 4 cut(s) 60, 325, 407, 433
SchI GAGTC 3 cut(s) 273, 777, 827
SfcI CTRYAG 1 cut(s) 240
Sse9I AATT 8 cut(s) 199, 331, 437, 480, 559, 626, 662, 720
SsiI CCGC 1 cut(s) 822
TaaI ACNGT 2 cut(s) 414, 510
TaiI ACGT 2 cut(s) 90, 876
TaqI TCGA 2 cut(s) 533, 812
TasI AATT 8 cut(s) 199, 331, 437, 480, 559, 626, 662, 720
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 4 cut(s) 299, 440, 558, 650
Tru9I TTAA 4 cut(s) 299, 440, 558, 650
TscAI CASTG 3 cut(s) 582, 687, 757
TseI GCWGC 5 cut(s) 92, 337, 476, 632, 794
TspDTI ATGAA 5 cut(s) 21, 27, 129, 439, 504
TspRI CASTG 3 cut(s) 582, 687, 757
Van91I CCANNNNNTGG 2 cut(s) 212, 722
XapI RAATTY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.