FvH4_1g11342

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000393
Physical Location & Seq
Reverse (-)
6187061 .. 6188673
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11342.t1

Sequence Viewer

Length: 939 bp
ATGATTGAGCAGAAGCTGCGAAATGAAACATTTCCAGCGGTGTTTGCTTTCGGAGACTCAATATTGGATACTGGCAATAATGACTACATCATTTCTATAACCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAATGCCTACAGGAAGTTTAGCGATGGAAGAGTCCCCTCAGACTTCGTTGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGTGCAGGATATGACCCTTTCACTTCCAAATTACTGTCTGCCATTCCATTATCAGATCAATTAGACTTCTTCAAACAATACAAAAGCAAGATGATTGCAGCAGTTGGGGAGGAAAGAGCAGCCACTATAATATCAAAAGGCGGATACATTGTTGCTGTGGGAAGCGATGACATCGCAAATAATTATTTTACAACACCACTGAGGAGCCCTCACTATGACATTTCAGCTTATACAGATCTCCTGCTCGAATCAGCAATAAATTTTGTTCAGGAACTTTATGCACTGGGAGCAAGAATCATTGGAGTACTCAACTTGCCACCACTTGGGTGCTTGCCATCACAGAGAACACTGCATGGAGGCATAGAGAGGGCATGCTACGAGGCCGAGAACCAAGCAGCAATGCTCTTCAACTCCAAGCTCTCCACCCAAATAGACTTCCTCAATAAGAGACTTCCAGAAGCACAACTCTTTTACGCTGATATATATACCCCTTTGCTTTCCATAATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGATATATTGAGGTTGGCCCTTTGTGTAACAAAGCCTCCCCTGGTACTTGTGACAATGTGTCCAAGTACATATTCTGGGATAGCTTTCATCCTACAGAAAAGGCATACAGGATCCTCACTTCTAAAGTTACAGAACAAATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

313

Amino Acids

34.23

Weight (kDa)

4.83

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 14 - 305 3.6e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 937
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AccB7I CCANNNNNTGG 2 cut(s) 122, 554
AciI CCGC 2 cut(s) 38, 372
AclWI GGATC 2 cut(s) 898, 911
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 3 cut(s) 537, 838, 860
AfiI CCNNNNNNNGG 2 cut(s) 122, 554
AgsI TTSAA 4 cut(s) 197, 304, 640, 764
AhdI GACNNNNNGTC 1 cut(s) 850
AjnI CCWGG 1 cut(s) 832
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 848, 880
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 4 cut(s) 16, 458, 649, 876
AluI AGCT 4 cut(s) 16, 458, 649, 876
Alw26I GTCTC 3 cut(s) 48, 123, 673
AlwI GGATC 2 cut(s) 898, 911
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 612, 808
ApeKI GCWGC 4 cut(s) 16, 329, 350, 626
ApoI RAATTY 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 809
BamHI GGATCC 1 cut(s) 903
BanII GRGCYC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 3, 341, 362, 638
BccI CCATC 2 cut(s) 160, 574
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 2 cut(s) 61, 368
BcoDI GTCTC 3 cut(s) 48, 123, 673
BfmI CTRYAG 2 cut(s) 150, 885
BfuAI ACCTGC 1 cut(s) 221
BfuI GTATCC 2 cut(s) 61, 368
BglII AGATCT 1 cut(s) 466
BisI GCNGC 4 cut(s) 17, 330, 351, 627
BlsI GCNGC 4 cut(s) 18, 331, 352, 628
BmcAI AGTACT 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 834
BmeRI GACNNNNNGTC 1 cut(s) 850
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 2 cut(s) 437, 905
BmrFI CCNGG 1 cut(s) 834
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 770
BmuI ACTGGG 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 424, 456
Bpu10I CCTNAGC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 554
Bse1I ACTGG 3 cut(s) 76, 214, 519
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 785, 880
BseLI CCNNNNNNNGG 2 cut(s) 122, 554
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 194, 240, 422
BseNI ACTGG 3 cut(s) 76, 214, 519
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 4 cut(s) 3, 341, 362, 638
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 614, 810
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 122, 554
BsmAI GTCTC 3 cut(s) 48, 123, 673
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 2 cut(s) 614, 810
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 3 cut(s) 286, 466, 903
BspACI CCGC 2 cut(s) 38, 372
BspANI GGCC 2 cut(s) 614, 810
BspCNI CTCAG 3 cut(s) 193, 239, 423
BspLI GGNNCC 2 cut(s) 437, 905
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 898, 911
BspQI GCTCTTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 3 cut(s) 76, 214, 519
BssECI CCNNGG 1 cut(s) 832
BssMI GATC 3 cut(s) 286, 466, 903
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 165, 641
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 563, 604
BstDEI CTNAG 3 cut(s) 180, 226, 431
BstF5I GGATG 2 cut(s) 785, 880
BstKTI GATC 3 cut(s) 289, 469, 906
BstMAI GTCTC 3 cut(s) 48, 123, 673
BstMBI GATC 3 cut(s) 286, 466, 903
BstMWI GCNNNNNNNGC 3 cut(s) 16, 44, 518
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 2 cut(s) 150, 885
BstV1I GCAGC 4 cut(s) 3, 341, 362, 638
BstX2I RGATCY 2 cut(s) 466, 903
BstYI RGATCY 2 cut(s) 466, 903
BsuI GTATCC 2 cut(s) 61, 368
BsuRI GGCC 2 cut(s) 614, 810
BtgZI GCGATG 3 cut(s) 179, 388, 411
BtsCI GGATG 2 cut(s) 785, 880
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 428, 512, 578
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 563, 604
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 809
Csp6I GTAC 3 cut(s) 536, 837, 859
CviAII CATG 2 cut(s) 584, 603
CviJI RGCY 9 cut(s) 16, 353, 438, 458, 614, 649, 810, 827, 876
CviKI_1 RGCY 9 cut(s) 16, 353, 438, 458, 614, 649, 810, 827, 876
CviQI GTAC 3 cut(s) 536, 837, 859
DdeI CTNAG 3 cut(s) 180, 226, 431
DpnI GATC 3 cut(s) 288, 468, 905
DpnII GATC 3 cut(s) 286, 466, 903
DriI GACNNNNNGTC 1 cut(s) 850
Eam1104I CTCTTC 2 cut(s) 165, 641
Eam1105I GACNNNNNGTC 1 cut(s) 850
EarI CTCTTC 2 cut(s) 165, 641
EciI GGCGGA 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 440
FaeI CATG 2 cut(s) 587, 606
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 583, 602
Fnu4HI GCNGC 4 cut(s) 17, 330, 351, 627
FokI GGATG 2 cut(s) 792, 867
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 17, 330, 351, 627
GluI GCNGC 4 cut(s) 17, 330, 351, 627
HaeIII GGCC 2 cut(s) 614, 810
Hin1II CATG 2 cut(s) 587, 606
HinfI GANTC 4 cut(s) 56, 173, 479, 525
Hpy188I TCNGA 3 cut(s) 53, 183, 286
Hpy188III TCNNGA 3 cut(s) 197, 500, 686
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 236, 329, 512, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 44, 518
HpyF3I CTNAG 3 cut(s) 180, 226, 431
Hsp92II CATG 2 cut(s) 587, 606
Kzo9I GATC 3 cut(s) 286, 466, 903
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 2 cut(s) 435, 518
Lsp1109I GCAGC 4 cut(s) 3, 341, 362, 638
LweI GCATC 1 cut(s) 770
MaeIII GTNAC 3 cut(s) 818, 842, 919
MalI GATC 3 cut(s) 288, 468, 905
MboI GATC 3 cut(s) 286, 466, 903
MboII GAAGA 3 cut(s) 182, 292, 628
MflI RGATCY 2 cut(s) 466, 903
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 5 cut(s) 109, 260, 290, 412, 490
MlyI GAGTC 2 cut(s) 50, 182
MroXI GAANNNNTTC 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 556
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 3 cut(s) 16, 44, 518
NdeII GATC 3 cut(s) 286, 466, 903
NlaIII CATG 2 cut(s) 587, 606
NlaIV GGNNCC 2 cut(s) 437, 905
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 842
NspI RCATGY 1 cut(s) 606
OliI CACNNNNGTG 1 cut(s) 556
PaeI GCATGC 1 cut(s) 606
PaqCI CACCTGC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 641
PctI GAATGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 479, 525
PflMI CCANNNNNTGG 2 cut(s) 122, 554
PkrI GCNGC 4 cut(s) 18, 331, 352, 628
PleI GAGTC 2 cut(s) 50, 181
PpsI GAGTC 2 cut(s) 50, 181
PsiI TTATAA 1 cut(s) 937
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 437, 905
PspPI GGNCC 1 cut(s) 809
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 466, 903
RsaI GTAC 3 cut(s) 537, 838, 860
RsaNI GTAC 3 cut(s) 536, 837, 859
RseI CAYNNNNRTG 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 641
SatI GCNGC 4 cut(s) 17, 330, 351, 627
Sau3AI GATC 3 cut(s) 286, 466, 903
Sau96I GGNCC 1 cut(s) 809
ScaI AGTACT 1 cut(s) 537
SchI GAGTC 2 cut(s) 50, 182
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 440
SetI ASST 8 cut(s) 18, 121, 204, 235, 460, 651, 807, 878
SfaNI GCATC 1 cut(s) 770
SfcI CTRYAG 2 cut(s) 150, 885
SmiMI CAYNNNNRTG 1 cut(s) 556
SphI GCATGC 1 cut(s) 606
Sse9I AATT 5 cut(s) 109, 260, 290, 412, 490
SsiI CCGC 2 cut(s) 38, 372
SspI AATATT 2 cut(s) 63, 933
StyD4I CCNGG 1 cut(s) 832
TaaI ACNGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 477
TasI AATT 5 cut(s) 109, 260, 290, 412, 490
TatI WGTACW 2 cut(s) 535, 858
TfiI GAWTC 2 cut(s) 479, 525
TscAI CASTG 3 cut(s) 435, 519, 585
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 4 cut(s) 16, 329, 350, 626
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 2 cut(s) 39, 869
TspRI CASTG 3 cut(s) 435, 519, 585
Van91I CCANNNNNTGG 2 cut(s) 122, 554
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.