Rmu_sc0039572.1_g000001

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039572.1
OG0000393
Physical Location & Seq
Forward (+)
71 .. 592
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039572.1_g000001.1.cds

Sequence Viewer

Length: 411 bp
atgtgggagaagttacaggaactttatgcactggaagcaagagtgattgaagtagcaagtatgccgccaattgggtgtgtgccagcacagagaacactaggtggtgccatagagagcgcctgcgatgaggctgagaaccaagtagcaatcctctttaactcgaagctctccgcccttataaactccctcaataagagacttccagaagcacaactcatttacgttgacatatataaccctttgttgtccattatccaggagcttgctcaaaatggaactgttgagttcgggtctctgtgtaacaaagacacccagggtacttgtaacgatgcgtccaagtacatattctgggatggccttcatcctatagaaatagcttacaggatcctcacctatgcaatattaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

4.69

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 2 cut(s) 65, 171
AclWI GGATC 2 cut(s) 379, 392
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 2 cut(s) 319, 341
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 2 cut(s) 255, 312
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 3 cut(s) 166, 262, 377
AluI AGCT 3 cut(s) 166, 262, 377
Alw26I GTCTC 2 cut(s) 190, 297
AlwI GGATC 2 cut(s) 379, 392
AoxI GGCC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 382
BamHI GGATCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 104
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 257, 314
BcoDI GTCTC 2 cut(s) 190, 297
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 257, 314
BmiI GGNNCC 2 cut(s) 106, 386
BmrFI CCNGG 2 cut(s) 257, 314
BmsI GCATC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 312, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 257, 314
BseDI CCNNGG 2 cut(s) 312, 313
BseGI GGATG 2 cut(s) 358, 361
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 36
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 190, 297
BsnI GGCC 1 cut(s) 357
Bso31I GGTCTC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 2 cut(s) 65, 171
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 106, 386
BspPI GGATC 2 cut(s) 379, 392
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 312, 313
BssMI GATC 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 257, 314
Bst4CI ACNGT 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 84, 121, 264
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 358, 361
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 2 cut(s) 190, 297
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 257, 314
BstSCI CCNGG 2 cut(s) 255, 312
BstSFI CTRYAG 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuRI GGCC 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 358, 361
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 84, 121, 264
CfoI GCGC 1 cut(s) 119
CseI GACGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 318, 340
CviJI RGCY 5 cut(s) 131, 166, 262, 357, 377
CviKI_1 RGCY 5 cut(s) 131, 166, 262, 357, 377
CviQI GTAC 2 cut(s) 318, 340
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraIII CACNNNGTG 1 cut(s) 101
EciI GGCGGA 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 255, 312
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 2 cut(s) 348, 365
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 357
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 29, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 222
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 259
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 12, 299, 323
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 384
MluCI AATT 1 cut(s) 69
MnlI CCTC 4 cut(s) 121, 161, 197, 398
MseI TTAA 2 cut(s) 156, 404
MspR9I CCNGG 2 cut(s) 257, 314
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 2 cut(s) 257, 314
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 384
NlaIV GGNNCC 2 cut(s) 106, 386
PasI CCCWGGG 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 255, 312
PspGI CCWGG 2 cut(s) 255, 312
PspN4I GGNNCC 2 cut(s) 106, 386
PsuI RGATCY 1 cut(s) 384
RsaI GTAC 2 cut(s) 319, 341
RsaNI GTAC 2 cut(s) 318, 340
SaqAI TTAA 2 cut(s) 156, 404
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 384
ScrFI CCNGG 2 cut(s) 257, 314
SetI ASST 6 cut(s) 103, 168, 225, 264, 379, 395
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 65, 171
SspI AATATT 1 cut(s) 402
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 255, 312
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 156, 404
Tru9I TTAA 2 cut(s) 156, 404
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 36
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.